TCONS_00034965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034965
Unique NameTCONS_00034965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034965 ID=TCONS_00034965|Name=TCONS_00034965|organism=Clytia hemisphaerica|type=transcript|length=1518bp
GCGTTGTAACGATATGGCCTCacttataaaattttcttccttaCAAAAGA
CTATAAATGATTAATTTCTACGTGAGGCCATTCATAAGGTTTCTAAGTGC
TTTCGGTATATTTCATGTCATTAGAATTTTTGAttactcaattatttttc
aatgaatgCAAGATAATGGGGGATTATAAATAAGACAAGCTGATAATTGG
AAGCAGAGAATTGAGAACATTAACAGAGAAAAGACAAATCGTACACAACG
GAAGAAACTTGACGAAAAAACTTTGGAAAGAATGTTGCTGTATTTACTTC
TACTTGCCTTTATAGGCACTTCAACACAATTGAATATCAAGGATACTGTG
CACCGATGGGCACCACTTATCAGACTCGCCAAAAACGAACCATGGAAGCC
TTCATCCGTTGAATTCTTCTTAAAACATACTAAAATCACCCATGGATCTG
GACCTACAAACCTAACACCATCCAATCTGCCATCCTGTGACAGTGGCTGC
TTTCTAACTACGAAGGATAAAATGAAAAGCGCATCTACAAGCAGTCTAGC
TGTTTTCAAAGGACAATCTGTTAGTAAGGTTCCAGTTTACGCTTTTGTGG
ATCGTGATGAGCCTGAGGAGATATCAATTCAATATTACACCTTCTATCCT
TATAACCGTGGTAAAACAATCTGTATTGGTGTAGCTGGAAGTGGAAAGTG
CAAACTGAAAATTCTTGGCAAATGTATTGTAAGGATCCCAAAATGCAGCG
GCTTTACCAAATCGTTTGGACATCACGTTGGAGATTGGGAAGGGATCAAA
GTTGTCCTCAAGTCATCTGACGGTTCACCAAAGTATATCCAATTCAAAGC
TCATGGTAAGGAATATACATACAACTACAAATCAAACACCAAGAAATTCA
CCGATAAAAATGGCGAATCAATCCGATTCTATGGCTCACACCCAATTGTT
TATTCCGCTTTCGGATCACACGGTTGCCGAATTAAACCCGGTAGTCACAC
TTATAAAACCATTGCTGGAAACAACAAATTGATTGACGTTACAAGTGATG
GTACTAAATGGAAAACATGGCGAAAAATCAAGATAATTTTCAAGAAAGAG
TTAGGTCAATATACAGGCGATGAAAAATGGGTCAATTTTCTTGGTCGTTG
GGGAAATAAGAGAAGAGAATGCGGCTTTTGGGACTTGGTCGCTGGTATTT
GTGTTCTTAATAGTGGACCAAAAGGACCAAATAAATCTTTGTAGATTTTG
AcgtatttatttttgtttatgtttggtCTAAATTGGGTCTTTTGTGTggt
atttatttcaaaattataagaaaaagttGATGTAACaattgttcaaaatt
ttcaaatgtcttATTATTTTAGCAAAAGCTTACGCTCGAGAAAACAAGTT
TTCTTTCGTACTTAAaactagactagcaaactagtctgttaatccTGTCA
GAAAGACCCGCCACTAACCTAACTCCTAACTTCCCGCatcccgtgacatc
ttttaagCCCGACTGGCG
Run BLAST on NCBI

protein sequence of TCONS_00034965-protein

>TCONS_00034965-protein ID=TCONS_00034965-protein|Name=TCONS_00034965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MLLYLLLLAFIGTSTQLNIKDTVHRWAPLIRLAKNEPWKPSSVEFFLKHT
KITHGSGPTNLTPSNLPSCDSGCFLTTKDKMKSASTSSLAVFKGQSVSKV
PVYAFVDRDEPEEISIQYYTFYPYNRGKTICIGVAGSGKCKLKILGKCIV
RIPKCSGFTKSFGHHVGDWEGIKVVLKSSDGSPKYIQFKAHGKEYTYNYK
SNTKKFTDKNGESIRFYGSHPIVYSAFGSHGCRIKPGSHTYKTIAGNNKL
IDVTSDGTKWKTWRKIKIIFKKELGQYTGDEKWVNFLGRWGNKRRECGFW
DLVAGICVLNSGPKGPNKSL
Run BLAST on NCBI

transcript from alignment at sc0001236:38559..40968-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034965 ID=TCONS_00034965|Name=TCONS_00034965|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0001236:38559..40968- (Clytia hemisphaerica)
GCGTTGTAACGATATGGCCTCACTTATAAAATTTTCTTCCTTACAAAAGA
CTATAAATGATTAATTTCTACGTGAGGCCATTCATAAGGTTTCTAAGTGC
TTTCGGTATATTTCATGTCATTAGAATTTTTGATTACTCAATTATTTTTC
AATGAATGCAAGATAATGGGGGATTATAAATAAGACAAGCTGATAATTGG
AAGCAGAGAATTGAGAACATTAACAGAGAAAAGACAAATCGTACACAACG
GAAGAAACTTGACGAAAAAACTTTGGAAAGAATGTTGCTGTATTTACTTC
TACTTGCCTTTATAGGCACTTCAACACAATTGAGTAAGTAACCAGAAATT
CATAGTCTGAATGTAAATATTTTTTAAGTGTCACAGCATCTGTGGGCTTT
CAATTTTCCTAGTTAAGAAATTACAGACCTCCGGGACAGAAATGTTCAAT
GTCATTCATTAAACCTTGACATCCCTTGTTCGTTGATCAAACTATTTATA
AGAATATAGGCTTCGATGGCCAAAATATCAAGAACACTCTAAGACCATTT
CAAAGCTTCACGGACTCTAAAACACCCGATTTCGCCCCGAGGGGGCGTAC
GGGGTTTGCGATTTGTGAAATACCGAATAATTTTGCTAAAATTTCCGTGA
TTCCGTAAAAAATACTTGCAATTCCGATAAAATGTGGTGAAAGTTGAGAA
CAGCTTCAAAAATTTTAGATGCTATTATAAAAAACGTGGTTTACCTTGTT
TTTTTTGTCTAGATATCAAGGATACTGTGCACCGATGGGCACCACTTATC
AGACTCGCCAAAAACGAACCATGGAAGCCTTCATCCGTTGAATTCTTCTT
AAAACATACTAAAATCACCCATGGATCTGGACCTACAAACCTAACACCAT
CCAATCTGCCATCCTGTGACAGTGGCTGCTTTCTAACTACGAAGGATAAA
ATGAAAAGCGCATCTACAAGCAGTCTAGCTGTTTTCAAAGGACAATCTGT
TAGTAAGGTTCCAGTTTACGCTTTTGTGGATCGTGATGAGCCTGAGGAGA
TATCAATTCAATATTACACCTTCTATCCTTATAACCGTGGTAAAACAATC
TGTATTGGTGTAGCTGGAAGTGGAAAGTGCAAACTGAAGTAAGTACTATT
GTATAAGAATTGCAATTTGATTGCAATAAGAAAGTTCACCTGAAAAATTG
CAAGTTGCAAGAAAATATTTATAGGGTGTCACGGAAGGGTAGCAAGCGCA
CTCGATTCGCAAATTACAGGCAAAGAAGTACTGGAACCTGCCATGAACCC
CTCAACGGTTACCGTGATTGAGAAAAAACGTCGAGTGAAGCTGTGATTGA
CTGAGACATACAATAAGATACTCTGGTTGTGTGGACCCACTCTGAAAGAA
ATATGTTCACATGAGCAATATTCAGCCAATCAGAGCTTTACTTTACCCGA
CGTTTTTTTTTTTAATGAATCTTGGTATCTATCGGGTTCGGTTTGAAAAC
GGTAGTACTCTTTCGTCCCATGTACCACTTTTCTTATGGATGTTGACATT
TGACATATTTTTCATGATTTCTCTTAAAAATCAATTATTTTTTCATTATA
GAATTCTTGGCAAATGTATTGTAAGGATCCCAAAATGCAGCGGCTTTACC
AAATCGTTTGGACATCACGTTGGAGATTGGGAAGGGATCAAAGTTGTCCT
CAAGTCATCTGACGGTTCACCAAAGTATATCCAATTCAAAGCTCATGGTA
AGGAATATACATACAACTACAAATCAAACACCAAGAAATTCACCGATAAA
AATGGCGAATCAATCCGATTCTATGGCTCACACCCAATTGTTTATTCCGC
TTTCGGATCACACGGTTGCCGAATTAAACCCGGTAGTCACACTTATAAAA
CCATTGCTGGAAACAACAAATTGATTGACGTTACAAGTGATGGTACTAAA
TGGAAAACATGGCGAAAAATCAAGATAATTTTCAAGAAAGAGTTAGGTCA
ATATACAGGCGATGAAAAATGGGTCAATTTTCTTGGTCGTTGGGGAAATA
AGAGAAGAGAATGCGGCTTTTGGGACTTGGTCGCTGGTATTTGTGTTCTT
AATAGTGGACCAAAAGGACCAAATAAATCTTTGTAGATTTTGACGTATTT
ATTTTTGTTTATGTTTGGTCTAAATTGGGTCTTTTGTGTGGTATTTATTT
CAAAATTATAAGAAAAAGTTGATGTAACAATTGTTCAAAATTTTCAAATG
TCTTATTATTTTAGCAAAAGCTTACGCTCGAGAAAACAAGTTTTCTTTCG
TACTTAAAACTAGACTAGCAAACTAGTCTGTTAATCCTGTCAGAAAGACC
CGCCACTAACCTAACTCCTAACTTCCCGCATCCCGTGACATCTTTTAAGC
CCGACTGGCG

Coding sequence (CDS) from alignment at sc0001236:38559..40968-

>TCONS_00034965 ID=TCONS_00034965|Name=TCONS_00034965|organism=Clytia hemisphaerica|type=CDS|length=2889bp|location=Sequence derived from alignment at sc0001236:38559..40968- (Clytia hemisphaerica)
AATTCTTGGCAAATGTATTGTAAGGATCCCAAAATGCAGCGGCTTTACCA
AATCGTTTGGACATCACGTTGGAGATTGGGAAGGGATCAAAGTTGTCCTC
AAGTCATCTGACGGTTCACCAAAGTATATCCAATTCAAAGCTCATGGTAA
GGAATATACATACAACTACAAATCAAACACCAAGAAATTCACCGATAAAA
ATGGCGAATCAATCCGATTCTATGGCTCACACCCAATTGTTTATTCCGCT
TTCGGATCACACGGTTGCCGAATTAAACCCGGTAGTCACACTTATAAAAC
CATTGCTGGAAACAACAAATTGATTGACGTTACAAGTGATGGTACTAAAT
GGAAAACATGGCGAAAAATCAAGATAATTTTCAAGAAAGAGTTAGGTCAA
TATACAGGCGATGAAAAATGGGTCAATTTTCTTGGTCGTTGGGGAAATAA
GAGAAGAGAATGCGGCTTTTGGGACTTGGTCGCTGGTATTTGTGTTCTTA
ATAGTGGACCAAAAGGACCAAATAAATCTTTGTAGATATCAAGGATACTG
TGCACCGATGGGCACCACTTATCAGACTCGCCAAAAACGAACCATGGAAG
CCTTCATCCGTTGAATTCTTCTTAAAACATACTAAAATCACCCATGGATC
TGGACCTACAAACCTAACACCATCCAATCTGCCATCCTGTGACAGTGGCT
GCTTTCTAACTACGAAGGATAAAATGAAAAGCGCATCTACAAGCAGTCTA
GCTGTTTTCAAAGGACAATCTGTTAGTAAGGTTCCAGTTTACGCTTTTGT
GGATCGTGATGAGCCTGAGGAGATATCAATTCAATATTACACCTTCTATC
CTTATAACCGTGGTAAAACAATCTGTATTGGTGTAGCTGGAAGTGGAAAG
TGCAAACTGAAATGTTGCTGTATTTACTTCTACTTGCCTTTATAGGCACT
TCAACACAATTGAAATTCTTGGCAAATGTATTGTAAGGATCCCAAAATGC
AGCGGCTTTACCAAATCGTTTGGACATCACGTTGGAGATTGGGAAGGGAT
CAAAGTTGTCCTCAAGTCATCTGACGGTTCACCAAAGTATATCCAATTCA
AAGCTCATGGTAAGGAATATACATACAACTACAAATCAAACACCAAGAAA
TTCACCGATAAAAATGGCGAATCAATCCGATTCTATGGCTCACACCCAAT
TGTTTATTCCGCTTTCGGATCACACGGTTGCCGAATTAAACCCGGTAGTC
ACACTTATAAAACCATTGCTGGAAACAACAAATTGATTGACGTTACAAGT
GATGGTACTAAATGGAAAACATGGCGAAAAATCAAGATAATTTTCAAGAA
AGAGTTAGGTCAATATACAGGCGATGAAAAATGGGTCAATTTTCTTGGTC
GTTGGGGAAATAAGAGAAGAGAATGCGGCTTTTGGGACTTGGTCGCTGGT
ATTTGTGTTCTTAATAGTGGACCAAAAGGACCAAATAAATCTTTGTAGAT
ATCAAGGATACTGTGCACCGATGGGCACCACTTATCAGACTCGCCAAAAA
CGAACCATGGAAGCCTTCATCCGTTGAATTCTTCTTAAAACATACTAAAA
TCACCCATGGATCTGGACCTACAAACCTAACACCATCCAATCTGCCATCC
TGTGACAGTGGCTGCTTTCTAACTACGAAGGATAAAATGAAAAGCGCATC
TACAAGCAGTCTAGCTGTTTTCAAAGGACAATCTGTTAGTAAGGTTCCAG
TTTACGCTTTTGTGGATCGTGATGAGCCTGAGGAGATATCAATTCAATAT
TACACCTTCTATCCTTATAACCGTGGTAAAACAATCTGTATTGGTGTAGC
TGGAAGTGGAAAGTGCAAACTGAAATGTTGCTGTATTTACTTCTACTTGC
CTTTATAGGCACTTCAACACAATTGAAATTCTTGGCAAATGTATTGTAAG
GATCCCAAAATGCAGCGGCTTTACCAAATCGTTTGGACATCACGTTGGAG
ATTGGGAAGGGATCAAAGTTGTCCTCAAGTCATCTGACGGTTCACCAAAG
TATATCCAATTCAAAGCTCATGGTAAGGAATATACATACAACTACAAATC
AAACACCAAGAAATTCACCGATAAAAATGGCGAATCAATCCGATTCTATG
GCTCACACCCAATTGTTTATTCCGCTTTCGGATCACACGGTTGCCGAATT
AAACCCGGTAGTCACACTTATAAAACCATTGCTGGAAACAACAAATTGAT
TGACGTTACAAGTGATGGTACTAAATGGAAAACATGGCGAAAAATCAAGA
TAATTTTCAAGAAAGAGTTAGGTCAATATACAGGCGATGAAAAATGGGTC
AATTTTCTTGGTCGTTGGGGAAATAAGAGAAGAGAATGCGGCTTTTGGGA
CTTGGTCGCTGGTATTTGTGTTCTTAATAGTGGACCAAAAGGACCAAATA
AATCTTTGTAGATATCAAGGATACTGTGCACCGATGGGCACCACTTATCA
GACTCGCCAAAAACGAACCATGGAAGCCTTCATCCGTTGAATTCTTCTTA
AAACATACTAAAATCACCCATGGATCTGGACCTACAAACCTAACACCATC
CAATCTGCCATCCTGTGACAGTGGCTGCTTTCTAACTACGAAGGATAAAA
TGAAAAGCGCATCTACAAGCAGTCTAGCTGTTTTCAAAGGACAATCTGTT
AGTAAGGTTCCAGTTTACGCTTTTGTGGATCGTGATGAGCCTGAGGAGAT
ATCAATTCAATATTACACCTTCTATCCTTATAACCGTGGTAAAACAATCT
GTATTGGTGTAGCTGGAAGTGGAAAGTGCAAACTGAAATGTTGCTGTATT
TACTTCTACTTGCCTTTATAGGCACTTCAACACAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020356XLOC_020356Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034965-proteinTCONS_00034965-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034965-exon-sc0001236-1575043694:40636..40968TCONS_00034965-exon-sc0001236-1575043694:40636..40968Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1575043694:39831..40206TCONS_00034965-exon-sc0001236-1575043694:39831..40206Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1575043694:38559..39367TCONS_00034965-exon-sc0001236-1575043694:38559..39367Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1510915933:40636..40968TCONS_00034965-exon-sc0001236-1510915933:40636..40968Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1510915933:39831..40206TCONS_00034965-exon-sc0001236-1510915933:39831..40206Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1510915933:38559..39367TCONS_00034965-exon-sc0001236-1510915933:38559..39367Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1491911889:40636..40968TCONS_00034965-exon-sc0001236-1491911889:40636..40968Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1491911889:39831..40206TCONS_00034965-exon-sc0001236-1491911889:39831..40206Clytia hemisphaericaexon
TCONS_00034965-exon-sc0001236-1491911889:38559..39367TCONS_00034965-exon-sc0001236-1491911889:38559..39367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:38559..40968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
183.785	211.701	100.839	74.1862	7.30996	4.96773	73.3489	72.9744	143.59	139.356	78.4226	122.671	28.3178	18.6259	35.8278	31.7598	257.642	137.115	18.6984	48.268	6.99664	7.55399	25.1713	19.2681	2.21154	3.35018	1.37505	2.89532	33.1505	24.5498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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