TCONS_00034960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034960
Unique NameTCONS_00034960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034960 ID=TCONS_00034960|Name=TCONS_00034960|organism=Clytia hemisphaerica|type=transcript|length=687bp
GTTAGTTTATCATGGATTAATTTCTGGGTCACGCACCGAAGTACACCCGC
GCGGGTCGCGCTCGGCATCACGACGGTTTTAACAATTGTTACTATGACGA
ATTCAGTTCGTTCCCAGGCCCCTTCGTCCGGGTTGTTTCGCTGTATTGAT
GTATACATGTTATGTTGTAATTTATTTGTCTTTGCGGCCCTTGGAGAGGC
GGCTCTGGTCGGCATGACAGCGCCGAGTGAGAAACATGCaaatgagaaag
aaaaggaCGAAAAAGAAAAAGCCAAAGAGAAAACTAACAAGGATAAGAAA
AAAGCACAAAAGGTGAACGATAACCCACTCAGTTTTGACAATCCAGTTTT
CAAAAGGACGGAAAGTGTGGTCAACAATGGAAATGGTATCCATAGCAACC
ATCAAAATGGTGACATGACAACTAAAACAAAACTACGGACCCGATCGATA
TTCAGGAATTCAAAAAACGCTCCTGAGAAAGAAGCAAAACCTAAGAAAAC
GTTCAATCCATTATTGACAAATATCAAGAAAGTTGGACCAGTGTATTTCT
ATACCCAGGATGTACATATTGTGGATAAAATTAGTCGTGTGTTGTTTcca
gttttgtttattttattcaatgtattgtttttctttgttatcCATATGGT
GAATGAAGACACGACGATTTGATAAGTTAAGTCATTG
Run BLAST on NCBI

transcript from alignment at sc0001236:22682..23571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034960 ID=TCONS_00034960|Name=TCONS_00034960|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at sc0001236:22682..23571+ (Clytia hemisphaerica)
GTTAGTTTATCATGGATTAATTTCTGGGTCACGCACCGAAGTACACCCGC
GCGGGTCGCGCTCGGCATCACGACGGTTTTAACAATTGTTACTATGACGA
ATTCAGTTCGTTCCCAGGCCCCTTCGTCCGGGTTGTTTCGCTGTATTGAT
GTATACATGTTATGTTGTAATTTATTTGTCTTTGCGGCCCTTGGAGAGGC
GGCTCTGGTCGGCATGACAGCGCCGAGTGAGAAACATGCaaatgagaaag
aaaaggaCGAAAAAGAAAAAGCCAAAGAGAAAACTAACAAGGATAAGAAA
AAAGCACAAAAGGTAACCAGATCTTGTATAGAAtcttcaaaatcttttga
taTATTCTGTAGCAATCGCTGGAAAGTTTTTAGCTTTTTATTATAAATTA
ACCAAAGTGTGATCTTGTACCATTTACAAAATGCATACAGTGTATAGTGA
CCCTTTCACCCCTTAATCAAGTCTCAAAGTATTATCTAACTTtacaatga
aatatattttcacAGGTGAACGATAACCCACTCAGTTTTGACAATCCAGT
TTTCAAAAGGACGGAAAGTGTGGTCAACAATGGAAATGGTATCCATAGCA
ACCATCAAAATGGTGACATGACAACTAAAACAAAACTACGGACCCGATCG
ATATTCAGGAATTCAAAAAACGCTCCTGAGAAAGAAGCAAAACCTAAGAA
AACGTTCAATCCATTATTGACAAATATCAAGAAAGTTGGACCAGTGTATT
TCTATACCCAGGATGTACATATTGTGGATAAAATTAGTCGTGTGTTGTTT
ccagttttgtttattttattcaatgtattgtttttctttgttatcCATAT
GGTGAATGAAGACACGACGATTTGATAAGTTAAGTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020352XLOC_020352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034960-exon-sc0001236-1491911889:22682..22993TCONS_00034960-exon-sc0001236-1491911889:22682..22993Clytia hemisphaericaexon
TCONS_00034960-exon-sc0001236-1510915933:22682..22993TCONS_00034960-exon-sc0001236-1510915933:22682..22993Clytia hemisphaericaexon
TCONS_00034960-exon-sc0001236-1575043694:22682..22993TCONS_00034960-exon-sc0001236-1575043694:22682..22993Clytia hemisphaericaexon
TCONS_00034960-exon-sc0001236-1491911889:23197..23571TCONS_00034960-exon-sc0001236-1491911889:23197..23571Clytia hemisphaericaexon
TCONS_00034960-exon-sc0001236-1510915933:23197..23571TCONS_00034960-exon-sc0001236-1510915933:23197..23571Clytia hemisphaericaexon
TCONS_00034960-exon-sc0001236-1575043694:23197..23571TCONS_00034960-exon-sc0001236-1575043694:23197..23571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:22682..23571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0974416	0.29258	0.50077	0	0.441826	0.706849	0	0.570865	0.570546	0.720892	0.480385	0.553718	0.377217	0.445073	2.07817	2.83407	0.450026	0.774102	0	0.249237	0.848376	1.16753	0.302622	0	1.09806	0.636745
Blast
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BLAST of TCONS_00034960 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.543e-16
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 VSLSWINFWVTHRSTPARVALGITTVLTIVTMTNSVRSQAPSSGLFRCIDVYMLCCNLFVFAALGEAALVGMTA 222
            V LSW++FW+   + PARVALGITTVLT+ T ++  R+  P     + ID++M  C LFVFAAL E A V   +
Sbjct:  269 VILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVS 342
The following BLAST results are available for this feature:
BLAST of TCONS_00034960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA25.543e-1648.65Glycine receptor subunit alpha-2 OS=Homo sapiens G... [more]
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