TCONS_00034956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034956
Unique NameTCONS_00034956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034956 ID=TCONS_00034956|Name=TCONS_00034956|organism=Clytia hemisphaerica|type=transcript|length=339bp
GGTAACTATGAAACAACAGACATATGCTAGCATTACAGAGTTAAAGAAAC
AAGAGGTAACGATCAAGAACTTcatcaaagaagagaaagaatAAGTACGA
TGGCTGAACCTGACAAAGTGCAATATCATTGTTCACAACATTGGTGAACT
CAAAGATGAAACCCTTGAAGAACAGCGAACAAGTGATAAAGATTACGTCG
AAGAATTTGTGAGCAACCAAATGGGACTAAAGGTACACATCGTCAGCGCA
GAAAGAATAGGAGCTCGAAAGAACGAGATGTTCAGGACGAAACGTTGGCG
ACCCTTAAAAGTTGTGTTAAGGAATGAAGAAGAGAAACN
Run BLAST on NCBI

transcript from alignment at sc0001235:64263..64601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034956 ID=TCONS_00034956|Name=TCONS_00034956|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at sc0001235:64263..64601 (Clytia hemisphaerica)
NGTTTCTCTTCTTCATTCCTTAACACAACTTTTAAGGGTCGCCAACGTTT
CGTCCTGAACATCTCGTTCTTTCGAGCTCCTATTCTTTCTGCGCTGACGA
TGTGTACCTTTAGTCCCATTTGGTTGCTCACAAATTCTTCGACGTAATCT
TTATCACTTGTTCGCTGTTCTTCAAGGGTTTCATCTTTGAGTTCACCAAT
GTTGTGAACAATGATATTGCACTTTGTCAGGTTCAGCCATCGTACTTatt
ctttctcttctttgatgAAGTTCTTGATCGTTACCTCTTGTTTCTTTAAC
TCTGTAATGCTAGCATATGTCTGTTGTTTCATAGTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020349XLOC_020349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034956-exon-sc0001235-1491911889:64263..64601TCONS_00034956-exon-sc0001235-1491911889:64263..64601Clytia hemisphaericaexon
TCONS_00034956-exon-sc0001235-1510915933:64263..64601TCONS_00034956-exon-sc0001235-1510915933:64263..64601Clytia hemisphaericaexon
TCONS_00034956-exon-sc0001235-1575043694:64263..64601TCONS_00034956-exon-sc0001235-1575043694:64263..64601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001235supercontigsc0001235:64263..64601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.45613	2.66124	2.47196	2.25266	0.368026	0.872456	0.35086	1.31389	0.919882	1.13942	0.552976	2.08352	0.783108	1.57615	0.154964	0.332599	0.204868	0.629948	0	0.607143	1.31929	2.48736	0.40674	1.13791	3.22305	1.3075	0.74841	1.99681	0.605803	0.308609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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