TCONS_00034952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034952
Unique NameTCONS_00034952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034952 ID=TCONS_00034952|Name=TCONS_00034952|organism=Clytia hemisphaerica|type=transcript|length=606bp
CTTGGCTTAATCTTATCCTACTCAGTGATATGCTTaatttgagcccaaaa
tgagctttaAGAACACAGTTGTCAAGTTTCAAAATTCCGAATGTGGGACA
AGATGTGAGCTAGCAACGTAAAATTGAGCTGCAGATTTCCAATAGGCGTT
CTCTCAATCGAGGTTTTCTCTGAGATTTTTTTATTATCTACttctattca
ttttttttctcattaatCCATCATGAGTCTGCGTGGGTGCATGGGTCAAA
ATAAGTTTTGcaacaagtttttgaaaaactaataagaaaatctcaagaaa
atctcaagaaaatctcaagaaaatccCAATTGGGCTCCATTCAAATTTTG
GGAGTACTATTTTGCTTTATTGTGCAAAAAGTCATGATAATCTGTCTAAT
ACAActcaaaaaaaggaaaaccaTTTTACATAGGTGTTCAGCTGTTCCTG
CAATTTTAAGGAGTTCAgggtttaaaaaataaaatctttgaaaattgtga
CCTTTCATGGAAAAATGATCACTTTAGCTTTCTACAGAAAGGTGTATCGA
TAGTAaaattatcaatgcctatctaGCTAGAGAGACAAATCGAGGGCAGC
GACACC
Run BLAST on NCBI

transcript from alignment at sc0001233:38600..39205

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034952 ID=TCONS_00034952|Name=TCONS_00034952|organism=Clytia hemisphaerica|type=transcript|length=606bp|location=Sequence derived from alignment at sc0001233:38600..39205 (Clytia hemisphaerica)
GGTGTCGCTGCCCTCGATTTGTCTCTCTAGCtagataggcattgataatt
tTACTATCGATACACCTTTCTGTAGAAAGCTAAAGTGATCATTTTTCCAT
GAAAGGtcacaattttcaaagattttattttttaaacccTGAACTCCTTA
AAATTGCAGGAACAGCTGAACACCTATGTAAAAtggttttcctttttttg
agTTGTATTAGACAGATTATCATGACTTTTTGCACAATAAAGCAAAATAG
TACTCCCAAAATTTGAATGGAGCCCAATTGggattttcttgagattttct
tgagattttcttgagattttcttattagtttttcaaaaacttgttgCAAA
ACTTATTTTGACCCATGCACCCACGCAGACTCATGATGGattaatgagaa
aaaaaatgaatagaaGTAGATAATAAAAAAATCTCAGAGAAAACCTCGAT
TGAGAGAACGCCTATTGGAAATCTGCAGCTCAATTTTACGTTGCTAGCTC
ACATCTTGTCCCACATTCGGAATTTTGAAACTTGACAACTGTGTTCTtaa
agctcattttgggctcaaattAAGCATATCACTGAGTAGGATAAGATTAA
GCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020345XLOC_020345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034952-exon-sc0001233-1491911889:38600..39205TCONS_00034952-exon-sc0001233-1491911889:38600..39205Clytia hemisphaericaexon
TCONS_00034952-exon-sc0001233-1510915933:38600..39205TCONS_00034952-exon-sc0001233-1510915933:38600..39205Clytia hemisphaericaexon
TCONS_00034952-exon-sc0001233-1575043694:38600..39205TCONS_00034952-exon-sc0001233-1575043694:38600..39205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001233supercontigsc0001233:38600..39205 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0871446	0	0	1.20513	0.285693	0.114892	0.537804	0.225917	0.0932784	0.0905383	0	0.356601	0.678946	0.253721	0.217825	0.737942	0.412564	0	0.298221	0.432014	0.885029	0.102464	0.0931544	0.191894	0.685042	0.122537	0.130774	0.297563	0.60634
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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