TCONS_00034924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034924
Unique NameTCONS_00034924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034924 ID=TCONS_00034924|Name=TCONS_00034924|organism=Clytia hemisphaerica|type=transcript|length=604bp
gttaatgaatggtgtattaaaaaatacatgatttctctttcgcaccaagt
aggcttttaaatcgaaatatgaaaaaaatccgtatcaaacacacgcgaat
gtctggaacgaaaaataccaaattagtggcaaaacgaaaCTTGTTTGGTT
TctgtaataaaaaagaaattcgctattgtgaactttgaacatgcttttAA
GATCAAGGTACTAATGGAATCACACAGGTTATCACTTTAATTTCATAACA
ACACACGGTATGGCATGAACATaccttgaaacatttttcatgtcATGTTT
GGGCATTGATGTTTGGGCCAAGTTTAGGCCACAAAATTTTGGACTTTCGT
CTAAGAAAAACTGGCCTGGCATGTAAAttgggaaattacttccgataatg
gattacacacttttcctgtatccttcaAAGGCCAAATGCGGTTTTGCTGG
GGCGTAGTAATCCTCCACAAGGCAGTGCTGGCAAAATCACAACAGAGGAG
CTACAAACTTTATTGTGGAAAGACAAATATCCGGATACAATAAACTTTAA
GACTGGGAACTGTCAAAATGTGTGTGCTGtgataaagtttttgcaagaAG
TCAG
Run BLAST on NCBI

transcript from alignment at sc0001231:3076..3679

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034924 ID=TCONS_00034924|Name=TCONS_00034924|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0001231:3076..3679 (Clytia hemisphaerica)
CTGACTtcttgcaaaaactttatcaCAGCACACACATTTTGACAGTTCCC
AGTCTTAAAGTTTATTGTATCCGGATATTTGTCTTTCCACAATAAAGTTT
GTAGCTCCTCTGTTGTGATTTTGCCAGCACTGCCTTGTGGAGGATTACTA
CGCCCCAGCAAAACCGCATTTGGCCTTtgaaggatacaggaaaagtgtgt
aatccattatcggaagtaatttcccaaTTTACATGCCAGGCCAGTTTTTC
TTAGACGAAAGTCCAAAATTTTGTGGCCTAAACTTGGCCCAAACATCAAT
GCCCAAACATgacatgaaaaatgtttcaaggtATGTTCATGCCATACCGT
GTGTTGTTATGAAATTAAAGTGATAACCTGTGTGATTCCATTAGTACCTT
GATCTTaaaagcatgttcaaagttcacaatagcgaatttcttttttatta
cagAAACCAAACAAGtttcgttttgccactaatttggtatttttcgttcc
agacattcgcgtgtgtttgatacggatttttttcatatttcgatttaaaa
gcctacttggtgcgaaagagaaatcatgtattttttaatacaccattcat
taac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020324XLOC_020324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034924-exon-sc0001231-1491911889:3076..3679TCONS_00034924-exon-sc0001231-1491911889:3076..3679Clytia hemisphaericaexon
TCONS_00034924-exon-sc0001231-1510915933:3076..3679TCONS_00034924-exon-sc0001231-1510915933:3076..3679Clytia hemisphaericaexon
TCONS_00034924-exon-sc0001231-1575043694:3076..3679TCONS_00034924-exon-sc0001231-1575043694:3076..3679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001231supercontigsc0001231:3076..3679 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.808354	0.813977	1.72252	1.52901	0.496775	0.288637	0.352284	0.325386	0.302748	0.281252	1.23351	0.542394	0.239462	0.434244	0.20884	0.335435	0.140101	0.417095	0.286433	0.201043	0.442115	0.259856	0	0.093626	0.0964326	0.258983	0.493912	0.922409	0.300983	0.30587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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