TCONS_00034921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034921
Unique NameTCONS_00034921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034921 ID=TCONS_00034921|Name=TCONS_00034921|organism=Clytia hemisphaerica|type=transcript|length=1416bp
ACTTTATCCCTACAGAAAATATCATCGCAAGTATCGAATGTGAATGGGGA
ATGTCCCTTCCGTCAATTCCTTTATTTGTATGTATCTCTTATTACCTCTC
TCTTCGATGTTAGTTACTTTGTTTTTGCTAAGGAAAACTAAGGACCAGCA
ATCGTCTTTAAAGGGAAAAAACCTGAAAGCCATTCGGAATCCATTGAAAG
CCATTCCTGTCTAGTGATCGAGGTACCTTTTATccgcacacatcccctct
gataagtttttatataattttgatatcaaaactaattttgggatgcatgc
agcctagcTACGTGACGACATTACATATACAAGGACATATTTTGAGGAAC
TGAATAAATTTTTAGATGAAGACCAAATATGGCGAAATTTCATGTCATGG
CAAATACATTGCTAGCTTGCAAGGGTATATTGAGATGAACCAAGAAAAAC
TATAAATGCTTGTTGGCAAAGATTTCGAGATTCATTTACAAAAACACCAG
TCAACACCGTTGGATATCTTTATATTAACCAAAAGGAACTACAACACACA
AAACGATATTGTCTGACTTTAGGAGATTTGGAATCCCTTGTTTCCTTTAT
TTAAGACATTTTTCCACGCATCTTTCATCGACCAACGAAACACGAGGATC
GTCAATCGAGATATCCATTCTTATATTCCTTCGACATTCGCAGATTATTT
TGGGCGTCTGAATTAAACAACATTCGAAGATGCCTAAGACAAAATCCCTC
ACAAATTGCTACGGCGTAGCAATGATAAGCCGAAGTAACAACTCCTTAAA
TACATTTAAAGACTTATCGGAgaagaaatacaaaaatatatgTCACACAT
CCGTGAAAAGCTCAAGTATGCCAAATCTGAACTCTTTATCTTCCTATAAT
CGGAATAGCACAAGCTTTATCAATAACGTTAAAAGAAGCTTAAGTGCACC
AAACTTGAATTCAAACCAGAACACTTCATCTTCAAGTTATTTTAACAGAT
CTAGTAATTTTAGAAAATCGACATGAAGTTATGTAATTCCAGTGTTATTA
TTAGATCTTGTTTCATCTAACGTAACGTCTTGGATGAACGAAACTGTGGC
TGTATTTACACTAGTGTAAAGGTCCCCAACGAGTGCCAAATTTCTCTCGA
CGAATatcattttttttgctcttgACATTCATGAAATAGTTTTTGTTATA
AGGGATACGAGTCAGACAAGAAAAACNGCTCTTCACATTCATGGAATAGT
TTTTGTTATAAGGGATACGAGTCAGACAAGAAAAACGCGGCTGCTTCGCA
AATTTTTGACAAGACCCTTTTTATTCAACCTTCGTCAAAAGATCAACCTA
GAAAGCAAGATTATGACCTTACGTTTGTTAGCTTTCATCCGATATTTTGG
CCGCCTTTATTCAAGA
Run BLAST on NCBI

transcript from alignment at sc0001231:74011..75764+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034921 ID=TCONS_00034921|Name=TCONS_00034921|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0001231:74011..75764+ (Clytia hemisphaerica)
ACTTTATCCCTACAGAAAATATCATCGCAAGTATCGAATGTGAATGGGGA
ATGTCCCTTCCGTCAATTCCTTTATTTGTATGTATCTCTTATTACCTCTC
TCTTCGATGTTAGTTACTTTGTTTTTGCTAAGGAAAACTAAGGACCAGCA
ATCGTCTTTAAAGGGAAAAAACCTGAAAGCCATTCGGAATCCATTGAAAG
CCATTCCTGTCTAGTGATCGAGGTACCTTTTATccgcacacatcccctct
gataagtttttatataattttgatatcaaaactaattttgggatgcatgc
agcctagcTACGTGACGACATTACATATACAAGGACATATTTTGAGGAAC
TGAATAAATTTTTAGATGAAGACCAAATATGGCGAAATTTCATGTCATGG
CAAATACATTGCTAGCTTGCAAGGGTATATTGAGATGAACCAAGAAAAAC
TATAAATGCTTGTTGGCAAAGATTTCGAGATTCATTTACAAAAACACCAG
TCAACACCGTTGGATATCTTTATATTAGTAAGGTGGGTTTTATACAATAT
GGTTTCCTTTTTATAGGAAATTGTCATTTTCcaatattgattttatttta
atcTTTTAATTTCGACTTTAACGATTAAGCTTATATTATATCTAAGTCTG
AACTGCTTCTAGTTAACGTACAGTTTACTAGCATTACAGGTAGACGTTCT
GTCTATCGTGCAGACTTATTCTATAAACTCCCTTTACAACTGGTCTGATT
TCAATAcagtaaaaacatttttggtggtCAAGTACTTACATTGAACTAAA
GCGACAAAATCCGCCATCTGTGAACGATTATGACAGATTTGTTTCAGGAT
GTTTCTCTTTTATAGACCAAAAGGAACTACAACACACAAAACGATATTGT
CTGACTTTAGGAGATTTGGAATCCCTTGTTTCCTTTATTTAAGACATTTT
TCCACGCATCTTTCATCGACCAACGAAACACGAGGATCGTCAATCGAGAT
ATCCATTCTTATATTCCTTCGACATTCGCAGATTATTTTGGGCGTCTGAA
TTAAACAACATTCGAAGATGCCTAAGACAAAATCCCTCACAAATTGCTAC
GGCGTAGCAATGATAAGCCGAAGTAACAACTCCTTAAATACATTTAAAGA
CTTATCGGAgaagaaatacaaaaatatatgTCACACATCCGTGAAAAGCT
CAAGTATGCCAAATCTGAACTCTTTATCTTCCTATAATCGGAATAGCACA
AGCTTTATCAATAACGTTAAAAGAAGCTTAAGTGCACCAAACTTGAATTC
AAACCAGAACACTTCATCTTCAAGTTATTTTAACAGATCTAGTAATTTTA
GAAAATCGACATGAAGTTATGTAATTCCAGTGTTATTATTAGATCTTGTT
TCATCTAACGTAACGTCTTGGATGAACGAAACTGTGGCTGTATTTACACT
AGTGTAAAGGTCCCCAACGAGTGCCAAATTTCTCTCGACGAATatcattt
tttttgctcttgACATTCATGAAATAGTTTTTGTTATAAGGGATACGAGT
CAGACAAGAAAAACNGCTCTTCACATTCATGGAATAGTTTTTGTTATAAG
GGATACGAGTCAGACAAGAAAAACGCGGCTGCTTCGCAAATTTTTGACAA
GACCCTTTTTATTCAACCTTCGTCAAAAGATCAACCTAGAAAGCAAGATT
ATGACCTTACGTTTGTTAGCTTTCATCCGATATTTTGGCCGCCTTTATTC
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020322XLOC_020322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034921-exon-sc0001231-1491911889:74011..74537TCONS_00034921-exon-sc0001231-1491911889:74011..74537Clytia hemisphaericaexon
TCONS_00034921-exon-sc0001231-1510915933:74011..74537TCONS_00034921-exon-sc0001231-1510915933:74011..74537Clytia hemisphaericaexon
TCONS_00034921-exon-sc0001231-1575043694:74011..74537TCONS_00034921-exon-sc0001231-1575043694:74011..74537Clytia hemisphaericaexon
TCONS_00034921-exon-sc0001231-1491911889:74876..75764TCONS_00034921-exon-sc0001231-1491911889:74876..75764Clytia hemisphaericaexon
TCONS_00034921-exon-sc0001231-1510915933:74876..75764TCONS_00034921-exon-sc0001231-1510915933:74876..75764Clytia hemisphaericaexon
TCONS_00034921-exon-sc0001231-1575043694:74876..75764TCONS_00034921-exon-sc0001231-1575043694:74876..75764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001231supercontigsc0001231:74011..75764 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0585253	0.0855312	0.033166	0.0323708	0	0.0311594	0.975232	1.83226	0.296601	2.74005	0.236443	0.194693	1.26635	1.37861	0.848888	0.678751	0.175755	0.0901902	0.21738	1.43301	0.19829	0.124114	0.134267	0.152829	0.879639	1.28971	0.60247	0.941731	0.389835	0.296678
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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