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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034912 ID=TCONS_00034912|Name=TCONS_00034912|organism=Clytia hemisphaerica|type=transcript|length=1487bp
TCCGTGTGTGTAGCAACGGACGTCGCCAAACAATATCccagtttagaacc
ggctgataCAGCGGAAGAGCAAGATTACCGGTGTTTTATTGACGAGGACG
GTTTAACgcgttgttatgattttttagagCAGAAATTAGTAGACATTGAG
TTAAGACATGCCCAAGAGgtgcaaaggcttcaaaagaaATTGGATTTGGA
ACGTCAGGCTAGATTGTATTTACAACAACAAATTTTCCGTGATGGTGGAG
TCAATTTGGAAACGCTACAGGATGATATGCTATCTTTACCAGACTCCGTC
AACGGCGAACGCTCTTCATTATCTTCGATCAGTAATGAAGAGGGCTGGGA
ACAAGTAcaattcgatgacgtcactcCTGTTCGTTGGATACCGGACCACA
TGACACAGAATTGTTCGAGTTGTGGctttcattttaatttaatgtacCGC
AAACATCATTGTCGGTGAGTGAGAAAATGTGGTGGTGTGTTTTGTGATCC
ATGCTCCAATCATACGATCAGTGTACCAGAGGAACAACTTTACACTCCTG
TGCGTGTCTGTGCTAAATGTTACGAGTCACTGTCTCACCAGCCAACTTAA
GGTCCCTTAAAATGAATGGATAAATGTGCTAGTCATCATTCAGTGAATGG
ATATaaagtccaatgaaaaggaCGCGCCTGTCTGATCCTGGTGTTACTGA
AAGGACAATCCGCGAATTTTTCgaatcaaagaaaaagatgaaagaGACGA
TTAAAAAACAAAAGGTTGGCACGAATCGAATAATTCTTCCAGAGATTGAT
AACATACTGATTCAAGATGTCTTCAATACATTAGCGTCAAGTTGATAAAA
GGTCTGCTGTTTTCGGTGAGATTCGAAANCGATAATATACTGATTCAAGA
TGTCTTCAATACATTAGCGTCAAGTTGATAAAAGGTCTGCTGTTTTCGGT
GAGATTCGAAATgatgtttcaataaaaaatgattTAACGTTATAAAAGAT
CGGAAGGTTTATTGTTAGATAACGTATGTTCACGGGAGGTGCTGGACTTG
TTTACGCAGGAGTTTGAAAGCAGCACATCTAACCTAGAAATTGTGTGTTA
AACTGGTTTAAAAGCAATTTTTGTGgttaaaaaagaagcgatgcTGAAAA
AGGTGTTATAAAGAAATGACATATACAAGTTGGAAAAGCTCAGTTCGTTT
CTATCAAATTTGGTTGTTCAATTCTGAAACTGAaacaatgaaatatattt
tggaGGTAGGTGTCAATACTGTagataagaaaaaaattagtttaaaaaat
ttcaaatttcttgtAGTAATATGTAACAAGTTTATGGACCAGAACCAATC
ATTAATTCCTTTCTTCGGGGTCaatattttttgagatttaaagTAGAAAC
CAAATGGATATCCGATGTTCACTCCTACGGCCAGAATAATCCATTTTTTA
AGTATACATACCATGAACGATGCGatgatttttattt Run BLAST on NCBI transcript from alignment at sc0001231:22393..24846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034912 ID=TCONS_00034912|Name=TCONS_00034912|organism=Clytia hemisphaerica|type=transcript|length=2454bp|location=Sequence derived from alignment at sc0001231:22393..24846+ (Clytia hemisphaerica)
TCCGTGTGTGTAGCAACGGACGTCGCCAAACAATATCccagtttagaacc
ggctgataCAGCGGAAGAGCAAGATTACCGGTGTTTTATTGACGAGGACG
GTTTAACgcgttgttatgattttttagagCAGAAATTAGTAGACATTGAG
TTAAGACATGCCCAAGAGgtgcaaaggcttcaaaagaaATTGGATTTGGA
ACGTCAGGCTAGATTGTATTTACAACAACAAATTTTCCGTGATGGTGGAG
TCAATTTGGAAACGCTACAGGATGATATGGTAACTTCCCTTTACTAAATT
TTTCTCTATGACATTTAACCCTCGGATTAAACAGAAATTCCTGCCCAATC
TTCCTAGCTGATACTTCTGGCTTTTTCCGTTGGTGTCTGCTAACTGGAGG
GTCAACCATGTCTGTCATACACTGaaatttgataaaagatattgtaccat
ttcattttttgtttaataACTAGAGAGAGGAATGATAGAACGGAGCAACT
TAAAGCAAACCCAGAAGGGTTCACTAAAATtgttcgaaaaatttgaaatt
tcattagAAGTGATAAGAAGGAATATCGGAGTAGTGTAAGGGCGGATAAA
GCACCCTCTTCAGTGAATTCGCAATCGAAACAATAATAGACTCTTTTCTT
CATCTTCCATAGCTATCTTTACCAGACTCCGTCAACGGCGAACGCTCTTC
ATTATCTTCGATCAGTAATGAAGAGGGCTGGGAACAAGTAcaattcgatg
acgtcactcCTGTTCGTTGGATACCGGACCACATGACACAGAATTGTTCG
AGTTGTGGctttcattttaatttaatgtacCGCAAACATCATTGTCGGTG
AGTGAGGTTTGTAATTTCGCTGTTCTCTGAGAAATCGTTCGTAACTTACT
GACAACaatctaaaagtttttaatttaatGTACCGGAAACATCATTGTCG
GTGAGTGAGGTTTGTAGTTTCGCTGTTCTCTGGGNGCAAATCGTTCGTAA
CTTACGGCCAACAATCTAAAAGTTTACTCAACAATCTAATATACCATATT
CGCAATAAATTGGATAATGCTGCGGTACAACCACtgtgaaacaaaacaaa
acaaagcttgCGCATAATTCTCAAAAAACTTTAGAGTGTTTTAAGCGGCC
ATCTCGTAGGTCTCTAAAATTTCAATCGAGGAAGGTATCACAGAAGTAGA
CTAAAGATCCAGGGGTAGCTAAATTTTAGACAAAAAACAGTGATcgactt
ttcaaaaatgacctcctAAACATTGATAAACTCAGCCAATGACGTGAATG
CAATAAGAAACTGCTTTAGgggaaaaaaaactaaaaatgaccTGACTAGA
CCACGGGTTTGTCGCTAAAATGGAGctaatttaaaattaatttaaaattc
tGCAAGAGAAATAGTGAAATAATTACATTTACCATTTTAGAAAATGTGGT
GGTGTGTTTTGTGATCCATGCTCCAATCATACGATCAGTGTACCAGAGGA
ACAACTTTACACTCCTGTGCGTGTCTGTGCTAAATGTTACGAGTCACTGT
CTCACCAGCCAACTTAAGGTCCCTTAAAATGAATGGATAAATGTGCTAGT
CATCATTCAGTGAATGGATATaaagtccaatgaaaaggaCGCGCCTGTCT
GATCCTGGTGTTACTGAAAGGACAATCCGCGAATTTTTCgaatcaaagaa
aaagatgaaagaGACGATTAAAAAACAAAAGGTTGGCACGAATCGAATAA
TTCTTCCAGAGATTGATAACATACTGATTCAAGATGTCTTCAATACATTA
GCGTCAAGTTGATAAAAGGTCTGCTGTTTTCGGTGAGATTCGAAANCGAT
AATATACTGATTCAAGATGTCTTCAATACATTAGCGTCAAGTTGATAAAA
GGTCTGCTGTTTTCGGTGAGATTCGAAATgatgtttcaataaaaaatgat
tTAACGTTATAAAAGATCGGAAGGTTTATTGTTAGATAACGTATGTTCAC
GGGAGGTGCTGGACTTGTTTACGCAGGAGTTTGAAAGCAGCACATCTAAC
CTAGAAATTGTGTGTTAAACTGGTTTAAAAGCAATTTTTGTGgttaaaaa
agaagcgatgcTGAAAAAGGTGTTATAAAGAAATGACATATACAAGTTGG
AAAAGCTCAGTTCGTTTCTATCAAATTTGGTTGTTCAATTCTGAAACTGA
aacaatgaaatatattttggaGGTAGGTGTCAATACTGTagataagaaaa
aaattagtttaaaaaatttcaaatttcttgtAGTAATATGTAACAAGTTT
ATGGACCAGAACCAATCATTAATTCCTTTCTTCGGGGTCaatattttttg
agatttaaagTAGAAACCAAATGGATATCCGATGTTCACTCCTACGGCCA
GAATAATCCATTTTTTAAGTATACATACCATGAACGATGCGatgattttt
attt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034912-exon-sc0001231-1491911889:22393..22671 | TCONS_00034912-exon-sc0001231-1491911889:22393..22671 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1510915933:22393..22671 | TCONS_00034912-exon-sc0001231-1510915933:22393..22671 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1575043694:22393..22671 | TCONS_00034912-exon-sc0001231-1575043694:22393..22671 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1491911889:23055..23248 | TCONS_00034912-exon-sc0001231-1491911889:23055..23248 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1510915933:23055..23248 | TCONS_00034912-exon-sc0001231-1510915933:23055..23248 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1575043694:23055..23248 | TCONS_00034912-exon-sc0001231-1575043694:23055..23248 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1491911889:23833..24846 | TCONS_00034912-exon-sc0001231-1491911889:23833..24846 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1510915933:23833..24846 | TCONS_00034912-exon-sc0001231-1510915933:23833..24846 | Clytia hemisphaerica | exon |
| TCONS_00034912-exon-sc0001231-1575043694:23833..24846 | TCONS_00034912-exon-sc0001231-1575043694:23833..24846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001231 | supercontig | sc0001231:22393..24846 + |
Blast
BLAST of TCONS_00034912 vs. Swiss-Prot (Human)
Match: MTMR3 (Myotubularin-related protein 3 OS=Homo sapiens GN=MTMR3 PE=1 SV=3) HSP 1 Score: 122.094 bits (305), Expect = 3.126e-29 Identity = 72/185 (38.92%), Postives = 104/185 (56.22%), Query Frame = 1
Query: 52 ADTAEEQDYRCFIDEDGLTRCYDFLEQKLVDIELRHAQEVQRLQKKLDLERQARL---YLQQQIFRDGGVNLETLQDDMLSLPDS-VNGERSSLS----SISNEEGWEQVQFDDVTPVRWIPDHMTQNCSSCGFHFNLMYRKHHCR*VRKCGGVFCDPCSNHTISVPEEQLYTPVRVCAKCYESL 582
A ++ +Q R +D+DG++ D ++Q+L IE H QEV+ L+K++ E ++RL YL + +G D++ S+PDS N +++ LS I +E WEQV D RW+PDH+ +C +C F L RKHHC R CG VFC C N + VP +QL+ P RVC CY SL
Sbjct: 1003 ATSSPDQPSRSHLDDDGMSVYTDTIQQRLRQIESGHQQEVETLKKQVQ-ELKSRLESQYLTSSLHFNGDFG-----DEVTSIPDSESNLDQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYACDSAFWLASRKHHC---RNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSL 1178
The following BLAST results are available for this feature:
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