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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034898 ID=TCONS_00034898|Name=TCONS_00034898|organism=Clytia hemisphaerica|type=transcript|length=992bp
GTCGTTCCATAATCGTCCAAAACCTTGATTTTCACAGTTGATGTAGAGCA
ACAGCAGAAGACAGCCAACCATATTTTAACTGTCTTTCGTTTGTGATGTG
GTGTGTAGCATTGGAACGGTCCAGATAGGTCGACTTGGGTGTAGAAGAAT
GCTGGAGCTATGGTGATATTGCATCTGGAGNGGTTCAGAAGGTATTGAGA
GAATTTATACCTTTCAGATGTTTCTTTGAATGATAAGATGTGATAACTTT
GAACGATAGTATGTTCCTTGTTGATTTCAACCATCTGTTTGTTGGAGATC
GTAACTTCAGATGCTGATTGAATGGGAAATGATGACTGTGATTGCCTCAT
CCACTGTCCATTGATCCACTGTCCATTGATCCAATTAGATGATTGGTCGA
TATCCTGGAATGTGGCTTCTCTTCAGGTGCCAAGGTCTGCAAGGTTTTGA
TCTGTTGGAACGTAGTACCAATCTTTCTTGTCCGAGAAACGAAGGATTTC
TAAGACGCGACTTCGAACccactttttcaaaggtttgTCGTCATTGCTTA
TCCAGTACATTGCAATTTGGCTATCGGTCAGCTTGATAGATGAATCATGA
AGACTTTTCAATGATCGTTTAACGATTTCGCTTGTGTGAGTGTTTACAAG
AGCAGCAAATAATTCTGCCCGAGGTAGAGTGTAATCTTTTGGTACGACTT
TAGTTCTGGCGAAAATGAGTTGTCATGAAAATTCCCCATGAGGTCGAGGA
AAACGAGCGTAAATTGCAGTGCAGATGAGTGATTGAGATGCATCCCCAAA
ATCTACGTTATTGACTTTTAATGAAGTTGCATCTGAGGGAATAACAGCAC
GTTTGAATTTGATATTTGGAATCTCTTGCATCATCTCGTAATGATCTAGC
CAGATTGGGCGAAGTTCGTCTGGAATCTTATCATCCCAGTCGAGTTGTCG
AGTTGAAAGTTCGTGGAGATCGAGCTTGAGAGTAGCAACAAT Run BLAST on NCBI protein sequence of TCONS_00034898-protein >TCONS_00034898-protein ID=TCONS_00034898-protein|Name=TCONS_00034898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MRQSQSSFPIQSASEVTISNKQMVEINKEHTIVQSYHILSFKETSERYKF
SQYLLNXSRCNITIAPAFFYTQVDLSGPFQCYTPHHKRKTVKIWLAVFCC
CSTSTVKIKVLDDYGT Run BLAST on NCBI transcript from alignment at sc0001230:26172..27163 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034898 ID=TCONS_00034898|Name=TCONS_00034898|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0001230:26172..27163 (Clytia hemisphaerica)
ATTGTTGCTACTCTCAAGCTCGATCTCCACGAACTTTCAACTCGACAACT
CGACTGGGATGATAAGATTCCAGACGAACTTCGCCCAATCTGGCTAGATC
ATTACGAGATGATGCAAGAGATTCCAAATATCAAATTCAAACGTGCTGTT
ATTCCCTCAGATGCAACTTCATTAAAAGTCAATAACGTAGATTTTGGGGA
TGCATCTCAATCACTCATCTGCACTGCAATTTACGCTCGTTTTCCTCGAC
CTCATGGGGAATTTTCATGACAACTCATTTTCGCCAGAACTAAAGTCGTA
CCAAAAGATTACACTCTACCTCGGGCAGAATTATTTGCTGCTCTTGTAAA
CACTCACACAAGCGAAATCGTTAAACGATCATTGAAAAGTCTTCATGATT
CATCTATCAAGCTGACCGATAGCCAAATTGCAATGTACTGGATAAGCAAT
GACGAcaaacctttgaaaaagtggGTTCGAAGTCGCGTCTTAGAAATCCT
TCGTTTCTCGGACAAGAAAGATTGGTACTACGTTCCAACAGATCAAAACC
TTGCAGACCTTGGCACCTGAAGAGAAGCCACATTCCAGGATATCGACCAA
TCATCTAATTGGATCAATGGACAGTGGATCAATGGACAGTGGATGAGGCA
ATCACAGTCATCATTTCCCATTCAATCAGCATCTGAAGTTACGATCTCCA
ACAAACAGATGGTTGAAATCAACAAGGAACATACTATCGTTCAAAGTTAT
CACATCTTATCATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAATA
CCTTCTGAACCNCTCCAGATGCAATATCACCATAGCTCCAGCATTCTTCT
ACACCCAAGTCGACCTATCTGGACCGTTCCAATGCTACACACCACATCAC
AAACGAAAGACAGTTAAAATATGGTTGGCTGTCTTCTGCTGTTGCTCTAC
ATCAACTGTGAAAATCAAGGTTTTGGACGATTATGGAACGAC Coding sequence (CDS) from alignment at sc0001230:26172..27163 >TCONS_00034898 ID=TCONS_00034898|Name=TCONS_00034898|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0001230:26172..27163 (Clytia hemisphaerica)
ATGAGGCAATCACAGTCATCATTTCCCATTCAATCAGCATCTGAAGTTAC
GATCTCCAACAAACAGATGGTTGAAATCAACAAGGAACATACTATCGTTC
AAAGTTATCACATCTTATCATTCAAAGAAACATCTGAAAGGTATAAATTC
TCTCAATACCTTCTGAACCNCTCCAGATGCAATATCACCATAGCTCCAGC
ATTCTTCTACACCCAAGTCGACCTATCTGGACCGTTCCAATGCTACACAC
CACATCACAAACGAAAGACAGTTAAAATATGGTTGGCTGTCTTCTGCTGT
TGCTCTACATCAACTGTGAAAATCAAGGTTTTGGACGATTATGGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034898-exon-sc0001230-1491911889:26172..27163 | TCONS_00034898-exon-sc0001230-1491911889:26172..27163 | Clytia hemisphaerica | exon |
| TCONS_00034898-exon-sc0001230-1510915933:26172..27163 | TCONS_00034898-exon-sc0001230-1510915933:26172..27163 | Clytia hemisphaerica | exon |
| TCONS_00034898-exon-sc0001230-1575043694:26172..27163 | TCONS_00034898-exon-sc0001230-1575043694:26172..27163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001230 | supercontig | sc0001230:26172..27163 . |
Blast
The following BLAST results are available for this feature:
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