TCONS_00034897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034897
Unique NameTCONS_00034897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034897 ID=TCONS_00034897|Name=TCONS_00034897|organism=Clytia hemisphaerica|type=transcript|length=908bp
GTCCGGTAAGGTCGAAGATTTCTGCGACTTTAGAAGCACAGTGACGTCTT
GTCAATCGTTCTGGGATGATATTGATGGTTTCAGTTGATTTCTTCCCTCT
acgtttctttgaaaaattcaattcgGATATATTGATTGAGAGCTCCTCGG
TTTTGGGGTGCCATATCATGCCTCCGACGCCAATTGTGACACCATCATCT
GTTAGCTGTTCTGGTGGATCAGATCCGGAAAACGTGATTCCTTTTAGCTT
GAAATTACCATGACTCAGGACGAATTCAATTTCATCAGCTCTTTGGTGTG
CATCTAGAATAGTTGATGCACCTGTTATACAATCATCAACATAGACGTCG
TGTTGAAGGATTTCGTCAACTTTGATCTTTGAAGGATGTCGAGATCGAAC
GAAGGGCGTATTCGGCTTGATTGCCACTTGGACGAATGCCATAGATCAAA
GTCTTTATGATCTTTTCTTTTGGAGCTTTGGTTGAGTCAAGTGATTCTTC
CCAGAGGTAACGTTGGTAACACCAATGGGATTCGTGGAGTCTAATGGTGT
TGTACACTTTTCTAATGTCAGTATGAAAGCCGATGGGATGGATTGTCCAA
CGGATGAGTATTTCCTGGAGTTTATTGAGACTATTGTAACCTTTAGCCAG
TAAATCGTTGATGCTAAAGCCAGTTGATGTTGGGTGTGATCCATCGAAAA
CGATTCTACAAGGAGTTGTGACAGATGAAGCCTTCCATACGACTCTCCAA
GGTATGAAGTTATGGATCGATGTGTCCTTGAGCATTGATTGTTGTTGAGC
ATTAAGATTTTCAATGTAGTCCACAAAACCAAGATCTTGAAGTTTTGCTT
CAGATGAAATGATTTCGACTTTATCTGATGGAGAGTTGTTGAGTTTTCGA
AGCTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00034897-protein

>TCONS_00034897-protein ID=TCONS_00034897-protein|Name=TCONS_00034897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
QQLRKLNNSPSDKVEIISSEAKLQDLGFVDYIENLNAQQQSMLKDTSIHN
FIPWRVVWKASSVTTPCRIVFDGSHPTSTGFSINDLLAKGYNSLNKLQEI
LIRWTIHPIGFHTDIRKVYNTIRLHESHWCYQRYLWEESLDSTKAPKEKI
IKTLIYGIRPSGNQAEYALRSISTSFKDQS
Run BLAST on NCBI

transcript from alignment at sc0001230:25125..26032

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034897 ID=TCONS_00034897|Name=TCONS_00034897|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0001230:25125..26032 (Clytia hemisphaerica)
CAACAGCTTCGAAAACTCAACAACTCTCCATCAGATAAAGTCGAAATCAT
TTCATCTGAAGCAAAACTTCAAGATCTTGGTTTTGTGGACTACATTGAAA
ATCTTAATGCTCAACAACAATCAATGCTCAAGGACACATCGATCCATAAC
TTCATACCTTGGAGAGTCGTATGGAAGGCTTCATCTGTCACAACTCCTTG
TAGAATCGTTTTCGATGGATCACACCCAACATCAACTGGCTTTAGCATCA
ACGATTTACTGGCTAAAGGTTACAATAGTCTCAATAAACTCCAGGAAATA
CTCATCCGTTGGACAATCCATCCCATCGGCTTTCATACTGACATTAGAAA
AGTGTACAACACCATTAGACTCCACGAATCCCATTGGTGTTACCAACGTT
ACCTCTGGGAAGAATCACTTGACTCAACCAAAGCTCCAAAAGAAAAGATC
ATAAAGACTTTGATCTATGGCATTCGTCCAAGTGGCAATCAAGCCGAATA
CGCCCTTCGTTCGATCTCGACATCCTTCAAAGATCAAAGTTGACGAAATC
CTTCAACACGACGTCTATGTTGATGATTGTATAACAGGTGCATCAACTAT
TCTAGATGCACACCAAAGAGCTGATGAAATTGAATTCGTCCTGAGTCATG
GTAATTTCAAGCTAAAAGGAATCACGTTTTCCGGATCTGATCCACCAGAA
CAGCTAACAGATGATGGTGTCACAATTGGCGTCGGAGGCATGATATGGCA
CCCCAAAACCGAGGAGCTCTCAATCAATATATCcgaattgaatttttcaa
agaaacgtAGAGGGAAGAAATCAACTGAAACCATCAATATCATCCCAGAA
CGATTGACAAGACGTCACTGTGCTTCTAAAGTCGCAGAAATCTTCGACCT
TACCGGAC

Coding sequence (CDS) from alignment at sc0001230:25125..26032

>TCONS_00034897 ID=TCONS_00034897|Name=TCONS_00034897|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0001230:25125..26032 (Clytia hemisphaerica)
CAACAGCTTCGAAAACTCAACAACTCTCCATCAGATAAAGTCGAAATCAT
TTCATCTGAAGCAAAACTTCAAGATCTTGGTTTTGTGGACTACATTGAAA
ATCTTAATGCTCAACAACAATCAATGCTCAAGGACACATCGATCCATAAC
TTCATACCTTGGAGAGTCGTATGGAAGGCTTCATCTGTCACAACTCCTTG
TAGAATCGTTTTCGATGGATCACACCCAACATCAACTGGCTTTAGCATCA
ACGATTTACTGGCTAAAGGTTACAATAGTCTCAATAAACTCCAGGAAATA
CTCATCCGTTGGACAATCCATCCCATCGGCTTTCATACTGACATTAGAAA
AGTGTACAACACCATTAGACTCCACGAATCCCATTGGTGTTACCAACGTT
ACCTCTGGGAAGAATCACTTGACTCAACCAAAGCTCCAAAAGAAAAGATC
ATAAAGACTTTGATCTATGGCATTCGTCCAAGTGGCAATCAAGCCGAATA
CGCCCTTCGTTCGATCTCGACATCCTTCAAAGATCAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020308XLOC_020308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034897-exon-sc0001230-1491911889:25125..26032TCONS_00034897-exon-sc0001230-1491911889:25125..26032Clytia hemisphaericaexon
TCONS_00034897-exon-sc0001230-1510915933:25125..26032TCONS_00034897-exon-sc0001230-1510915933:25125..26032Clytia hemisphaericaexon
TCONS_00034897-exon-sc0001230-1575043694:25125..26032TCONS_00034897-exon-sc0001230-1575043694:25125..26032Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034897-proteinTCONS_00034897-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:25125..26032 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.970347	0.809497	0.20224	0.449783	0.570987	0.270435	0.41889	0.549806	0.384932	0.345217	0.462795	0.338025	0.593181	0.315499	0.358004	0.0977142	0.495321	0.681259	0.323722	0.564586	1.24282	1.40452	0.375015	0.921162	3.69822	2.64863	1.00667	1.11411	3.13738	3.73852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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