TCONS_00034896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034896
Unique NameTCONS_00034896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034896 ID=TCONS_00034896|Name=TCONS_00034896|organism=Clytia hemisphaerica|type=transcript|length=358bp
ACTCCCTCATACAGAAGCACGTCTACTTGCCAGAACTCTATTCAATGAGC
TCATATGCTGCCATGGCGTTCCACGTCAAATGTTGACCGATCGAGGAAAG
AATTTTATGTCGAATCTAATGGCTGAACTTTGTGTAATGACAGGTTTGGA
AAAGCTGAACACCTCGTCTTACCACCCGCAAACAAATGGCATGGTTGAAA
GAATGAATGGCACCATTGTTCGCCGCTTAGCAATGCACTGTGAAGAAAGA
CAAAGAGATTGGGATGTCCACCTACCAGGTGTACTTTTATCGATTCGAAC
AACAGTGGCAAgttcaacaaaagaaacaccTTTCTTTTTGGTGTATGGAA
GACAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00034896-protein

>TCONS_00034896-protein ID=TCONS_00034896-protein|Name=TCONS_00034896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
LPHTEARLLARTLFNELICCHGVPRQMLTDRGKNFMSNLMAELCVMTGLE
KLNTSSYHPQTNGMVERMNGTIVRRLAMHCEERQRDWDVHLPGVLLSIRT
TVASSTKETPFFLVYGRQA
Run BLAST on NCBI

transcript from alignment at sc0001230:18980..19337

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034896 ID=TCONS_00034896|Name=TCONS_00034896|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0001230:18980..19337 (Clytia hemisphaerica)
TGCTTGTCTTCCATACACCAAAAAGAAAggtgtttcttttgttgaacTTG
CCACTGTTGTTCGAATCGATAAAAGTACACCTGGTAGGTGGACATCCCAA
TCTCTTTGTCTTTCTTCACAGTGCATTGCTAAGCGGCGAACAATGGTGCC
ATTCATTCTTTCAACCATGCCATTTGTTTGCGGGTGGTAAGACGAGGTGT
TCAGCTTTTCCAAACCTGTCATTACACAAAGTTCAGCCATTAGATTCGAC
ATAAAATTCTTTCCTCGATCGGTCAACATTTGACGTGGAACGCCATGGCA
GCATATGAGCTCATTGAATAGAGTTCTGGCAAGTAGACGTGCTTCTGTAT
GAGGGAGT

Coding sequence (CDS) from alignment at sc0001230:18980..19337

>TCONS_00034896 ID=TCONS_00034896|Name=TCONS_00034896|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001230:18980..19337 (Clytia hemisphaerica)
TGCTTGTCTTCCATACACCAAAAAGAAAggtgtttcttttgttgaacTTG
CCACTGTTGTTCGAATCGATAAAAGTACACCTGGTAGGTGGACATCCCAA
TCTCTTTGTCTTTCTTCACAGTGCATTGCTAAGCGGCGAACAATGGTGCC
ATTCATTCTTTCAACCATGCCATTTGTTTGCGGGTGGTAAGACGAGGTGT
TCAGCTTTTCCAAACCTGTCATTACACAAAGTTCAGCCATTAGATTCGAC
ATAAAATTCTTTCCTCGATCGGTCAACATTTGACGTGGAACGCCATGGCA
GCATATGAGCTCATTGAATAGAGTTCTGGCAAGTAGACGTGCTTCTGTAT
GAGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020307XLOC_020307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034896-exon-sc0001230-1491911889:18980..19337TCONS_00034896-exon-sc0001230-1491911889:18980..19337Clytia hemisphaericaexon
TCONS_00034896-exon-sc0001230-1510915933:18980..19337TCONS_00034896-exon-sc0001230-1510915933:18980..19337Clytia hemisphaericaexon
TCONS_00034896-exon-sc0001230-1575043694:18980..19337TCONS_00034896-exon-sc0001230-1575043694:18980..19337Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034896-proteinTCONS_00034896-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:18980..19337 .
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.405613	0.29019	0	0	0	0.264863	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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