TCONS_00034894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034894
Unique NameTCONS_00034894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034894 ID=TCONS_00034894|Name=TCONS_00034894|organism=Clytia hemisphaerica|type=transcript|length=684bp
CTGGAGCAGAAAAGTTTCCTCCAAAAAGGAGACGTCTAATTCGGAGGAAA
TCTTTATTAGTCCATCTGATTGTATCCAAGCATTCAATACGAAAACATAC
GATGGAAACCCTCTTGAAAGAAAAAGTTGACATCGTTTTGTCAGTACACA
CCCTGATGGAAAAGTGGCTAAATGCAAGTATTGGAAGAAGACAACGTTAA
AAATCAAGGAATTGACCCTTAAGACCTTCGATGCTTAAGTCATTGGTAAA
GAAAAATACATTGGACAGCACTTAACCAACAGCAAATGCCCAAGCGAAAT
TCCAAAAGGACAATCATACGGCTCTTGTACCATGAAAGATGCACCAAAAA
GTGCCCTAGTTTGGAATGACCCACATCATCCAGCAATCGATTGGCATTCA
CTAGGAAAACACGAAGTAAAGCAAATGGATAGTCATGTTCTAATTCCTTC
TCTCAAAGTTGGTGGAAGCATCCAAAATGAACATGGCGAAAGCAAAACTA
CTCTTTTGCTTGATAACGGTCTATTACTAAAGGACCCAGTGATGAAAGGA
AACAAATTCGAAGCCATTAAAGACATGGTGACTGCATATTCCAAACGAAT
GGTATCCGACACTCTTGGACCTATCCTACAAGCTCACATTGTGCGTACCC
TTACTAACCAGAAATTGGACATTATTCAAGAATG
Run BLAST on NCBI

protein sequence of TCONS_00034894-protein

>TCONS_00034894-protein ID=TCONS_00034894-protein|Name=TCONS_00034894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKDAPKSALVWNDPHHPAIDWHSLGKHEVKQMDSHVLIPSLKVGGSIQNE
HGESKTTLLLDNGLLLKDPVMKGNKFEAIKDMVTAYSKRMVSDTLGPILQ
AHIVRTLTNQKLDIIQE
Run BLAST on NCBI

transcript from alignment at sc0001230:979..1662

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034894 ID=TCONS_00034894|Name=TCONS_00034894|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0001230:979..1662 (Clytia hemisphaerica)
CATTCTTGAATAATGTCCAATTTCTGGTTAGTAAGGGTACGCACAATGTG
AGCTTGTAGGATAGGTCCAAGAGTGTCGGATACCATTCGTTTGGAATATG
CAGTCACCATGTCTTTAATGGCTTCGAATTTGTTTCCTTTCATCACTGGG
TCCTTTAGTAATAGACCGTTATCAAGCAAAAGAGTAGTTTTGCTTTCGCC
ATGTTCATTTTGGATGCTTCCACCAACTTTGAGAGAAGGAATTAGAACAT
GACTATCCATTTGCTTTACTTCGTGTTTTCCTAGTGAATGCCAATCGATT
GCTGGATGATGTGGGTCATTCCAAACTAGGGCACTTTTTGGTGCATCTTT
CATGGTACAAGAGCCGTATGATTGTCCTTTTGGAATTTCGCTTGGGCATT
TGCTGTTGGTTAAGTGCTGTCCAATGTATTTTTCTTTACCAATGACTTAA
GCATCGAAGGTCTTAAGGGTCAATTCCTTGATTTTTAACGTTGTCTTCTT
CCAATACTTGCATTTAGCCACTTTTCCATCAGGGTGTGTACTGACAAAAC
GATGTCAACTTTTTCTTTCAAGAGGGTTTCCATCGTATGTTTTCGTATTG
AATGCTTGGATACAATCAGATGGACTAATAAAGATTTCCTCCGAATTAGA
CGTCTCCTTTTTGGAGGAAACTTTTCTGCTCCAG

Coding sequence (CDS) from alignment at sc0001230:979..1662

>TCONS_00034894 ID=TCONS_00034894|Name=TCONS_00034894|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0001230:979..1662 (Clytia hemisphaerica)
TTCTTGAATAATGTCCAATTTCTGGTTAGTAAGGGTACGCACAATGTGAG
CTTGTAGGATAGGTCCAAGAGTGTCGGATACCATTCGTTTGGAATATGCA
GTCACCATGTCTTTAATGGCTTCGAATTTGTTTCCTTTCATCACTGGGTC
CTTTAGTAATAGACCGTTATCAAGCAAAAGAGTAGTTTTGCTTTCGCCAT
GTTCATTTTGGATGCTTCCACCAACTTTGAGAGAAGGAATTAGAACATGA
CTATCCATTTGCTTTACTTCGTGTTTTCCTAGTGAATGCCAATCGATTGC
TGGATGATGTGGGTCATTCCAAACTAGGGCACTTTTTGGTGCATCTTTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020305XLOC_020305Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034894-proteinTCONS_00034894-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034894-exon-sc0001230-1491911889:979..1662TCONS_00034894-exon-sc0001230-1491911889:979..1662Clytia hemisphaericaexon
TCONS_00034894-exon-sc0001230-1510915933:979..1662TCONS_00034894-exon-sc0001230-1510915933:979..1662Clytia hemisphaericaexon
TCONS_00034894-exon-sc0001230-1575043694:979..1662TCONS_00034894-exon-sc0001230-1575043694:979..1662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:979..1662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0728345	0	0.248209	0	0.114668	0	0	0.177955	0	0.477165	0	0.862073	0.965258	0.10945	0.082251	0	0.114939	1.61552	1.62039	0.0959896	0.128628	0	0	0.325094	0.27699	0	0	0.100712	0.22967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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