TCONS_00034888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034888
Unique NameTCONS_00034888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034888 ID=TCONS_00034888|Name=TCONS_00034888|organism=Clytia hemisphaerica|type=transcript|length=268bp
NNGGATGTAGTAATTTGTTGATGACTTTCCATGTTTCGGCTGAGGATTTG
TTAGCTAGGAGGTTCttaagaaatttctttttcgctCCTCGGATGGTCGA
TTCGAGGTTGCTCTTCACGTTTCTTAGTTGGTCAAGTTGTTCATTGTTGC
GGTTATTTTTCGAATTTAGCCGTAGTTCATTTTTCTGCCGTTGTAAATCT
CGGACATCAAGATCTTTCATCCATGGGGACGAAGGACGGGTCAGTTTGAT
CTTACGTACAGGTGCGTN
Run BLAST on NCBI

transcript from alignment at sc0001229:42183..42450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034888 ID=TCONS_00034888|Name=TCONS_00034888|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0001229:42183..42450 (Clytia hemisphaerica)
NACGCACCTGTACGTAAGATCAAACTGACCCGTCCTTCGTCCCCATGGAT
GAAAGATCTTGATGTCCGAGATTTACAACGGCAGAAAAATGAACTACGGC
TAAATTCGAAAAATAACCGCAACAATGAACAACTTGACCAACTAAGAAAC
GTGAAGAGCAACCTCGAATCGACCATCCGAGGagcgaaaaagaaatttct
taaGAACCTCCTAGCTAACAAATCCTCAGCCGAAACATGGAAAGTCATCA
ACAAATTACTACATCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020299XLOC_020299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034888-exon-sc0001229-1491911889:42183..42450TCONS_00034888-exon-sc0001229-1491911889:42183..42450Clytia hemisphaericaexon
TCONS_00034888-exon-sc0001229-1510915933:42183..42450TCONS_00034888-exon-sc0001229-1510915933:42183..42450Clytia hemisphaericaexon
TCONS_00034888-exon-sc0001229-1575043694:42183..42450TCONS_00034888-exon-sc0001229-1575043694:42183..42450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001229supercontigsc0001229:42183..42450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583184	0.0534528	0	0	15.4103	13.2266	7.46389	16.1638	3.74039	6.97801	4.61355	1.55359	9.24854	12.1818	1.67279	2.99798	0	0.691883	5.68204	15.1432	2.98565	1.23127	0	2.15045	4.38297	9.99149	44.8881	46.2853	2.90224	7.83346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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