TCONS_00034885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034885
Unique NameTCONS_00034885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034885 ID=TCONS_00034885|Name=TCONS_00034885|organism=Clytia hemisphaerica|type=transcript|length=913bp
CCTAAAAGCTTGTGAACTAGGCAAAGAGATATATGCTGGAATTTGAGGCC
TTTTTAATCTATTAATTTAGTTACAGACTATTGTTAACTTTAAGTTTCAA
TTCATACGTTATTAACTCTCATAGAATATTGTATTATGTATGACGATCTT
CTGTTATAAACAGTATTTTCGTAGCGTAAGATGCGTCTTTTCTTGCACTA
TTATTTTTCGCattttttcaactgtttttcTATCGTTTGTACAAATagtc
aatttcattttccaaatGGATAGCTTTTTTTTCAACTTCCATTTACCATG
GCTTTTTGTGTTGGCCGTGTTTCCAGTAGTTTCCAAGATTAGAGACACGA
CCTTTTATGGACGTAAGATGACGTATCAGCAATGTTGCGAGGCCAACTGA
TATCTTTAATATTGCCTAAGCATTCAATGTCCGCATTTTCATTTCATTCG
ATATCAAATTTAATCGTCACTGTATCATTATACTGAATATTCGATAATCT
TCCTTGATTGATGAAGAAAATGGCTCCAACACTACCACTTATGATGCATT
CTCCATGGGGTTTTTCGTAAAGCTTGAGAAACATTTGATCATAGGAACTT
TTAATAATATCCCAGTCCACCAATATACCATTTAAACAAAAGtctcattt
tgattgttttgaattGCATTGGCCATTGGGTCGTGTCATCAAAAGGTCCC
TTACTTATCCACAATGACACAGTAACGTGAGTCTTCTTCTCGGAATTTTG
ACGGCTGAAATTCAAGTGCAGCAATGCTTTGTATgtaccaaaaacaaaga
aagacgGTGATTCTGTAACGGTGTTGAATTCTTTGAATTCCTGAAATTTC
TGCTGTAGGTTGGGTATAGTCCATACGAAAGTGCTTTGAAGGATTTTCTC
ACAACTTCTCAGC
Run BLAST on NCBI

protein sequence of TCONS_00034885-protein

>TCONS_00034885-protein ID=TCONS_00034885-protein|Name=TCONS_00034885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
LRSCEKILQSTFVWTIPNLQQKFQEFKEFNTVTESPSFFVFGTYKALLHL
NFSRQNSEKKTHVTVSLWISKGPFDDTTQWPMQFKTIKMRLLFKWYIGGL
GYY
Run BLAST on NCBI

transcript from alignment at sc0001229:27968..28880

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034885 ID=TCONS_00034885|Name=TCONS_00034885|organism=Clytia hemisphaerica|type=transcript|length=913bp|location=Sequence derived from alignment at sc0001229:27968..28880 (Clytia hemisphaerica)
GCTGAGAAGTTGTGAGAAAATCCTTCAAAGCACTTTCGTATGGACTATAC
CCAACCTACAGCAGAAATTTCAGGAATTCAAAGAATTCAACACCGTTACA
GAATCACcgtctttctttgtttttggtacATACAAAGCATTGCTGCACTT
GAATTTCAGCCGTCAAAATTCCGAGAAGAAGACTCACGTTACTGTGTCAT
TGTGGATAAGTAAGGGACCTTTTGATGACACGACCCAATGGCCAATGCaa
ttcaaaacaatcaaaatgagaCTTTTGTTTAAATGGTATATTGGTGGACT
GGGATATTATTAAAAGTTCCTATGATCAAATGTTTCTCAAGCTTTACGAA
AAACCCCATGGAGAATGCATCATAAGTGGTAGTGTTGGAGCCATTTTCTT
CATCAATCAAGGAAGATTATCGAATATTCAGTATAATGATACAGTGACGA
TTAAATTTGATATCGAATGAAATGAAAATGCGGACATTGAATGCTTAGGC
AATATTAAAGATATCAGTTGGCCTCGCAACATTGCTGATACGTCATCTTA
CGTCCATAAAAGGTCGTGTCTCTAATCTTGGAAACTACTGGAAACACGGC
CAACACAAAAAGCCATGGTAAATGGAAGTTGAAAAAAAAGCTATCCattt
ggaaaatgaaattgactATTTGTACAAACGATAgaaaaacagttgaaaaa
atGCGAAAAATAATAGTGCAAGAAAAGACGCATCTTACGCTACGAAAATA
CTGTTTATAACAGAAGATCGTCATACATAATACAATATTCTATGAGAGTT
AATAACGTATGAATTGAAACTTAAAGTTAACAATAGTCTGTAACTAAATT
AATAGATTAAAAAGGCCTCAAATTCCAGCATATATCTCTTTGCCTAGTTC
ACAAGCTTTTAGG

Coding sequence (CDS) from alignment at sc0001229:27968..28880

>TCONS_00034885 ID=TCONS_00034885|Name=TCONS_00034885|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001229:27968..28880 (Clytia hemisphaerica)
CTGAGAAGTTGTGAGAAAATCCTTCAAAGCACTTTCGTATGGACTATACC
CAACCTACAGCAGAAATTTCAGGAATTCAAAGAATTCAACACCGTTACAG
AATCACcgtctttctttgtttttggtacATACAAAGCATTGCTGCACTTG
AATTTCAGCCGTCAAAATTCCGAGAAGAAGACTCACGTTACTGTGTCATT
GTGGATAAGTAAGGGACCTTTTGATGACACGACCCAATGGCCAATGCaat
tcaaaacaatcaaaatgagaCTTTTGTTTAAATGGTATATTGGTGGACTG
GGATATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020296XLOC_020296Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034885-proteinTCONS_00034885-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034885-exon-sc0001229-1491911889:27968..28880TCONS_00034885-exon-sc0001229-1491911889:27968..28880Clytia hemisphaericaexon
TCONS_00034885-exon-sc0001229-1510915933:27968..28880TCONS_00034885-exon-sc0001229-1510915933:27968..28880Clytia hemisphaericaexon
TCONS_00034885-exon-sc0001229-1575043694:27968..28880TCONS_00034885-exon-sc0001229-1575043694:27968..28880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001229supercontigsc0001229:27968..28880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334356	0.294856	1.36017	1.98943	0	0.0537028	0.19437	0.0606557	0.0424665	0.105203	0.357395	0.0671249	0.184035	0.239287	0.228925	0.14815	0.576513	1.18735	0.160711	0.112115	0.419477	0.285192	0.288907	0.240092	0.108213	0.144866	0.554082	0.294985	0.132512	0.088333
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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