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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034884 ID=TCONS_00034884|Name=TCONS_00034884|organism=Clytia hemisphaerica|type=transcript|length=1533bp
ttgaaattttgaatttaatttactttcttttgtttttaaaatgtagatat
agatttagaaaaacttatAAACATCCCTTACCAGACACAATGGAATATCA
AAGATTACAACACATTCAACTCGATCAACATTTGAACCCAATCGCCAGAG
CCATTTTACAAGGAGTTAACGATGAAAACAGTCCATTTTCAAAACTCAAT
GGTATTCCCCATGTTCTACAAATGATTTGGCGATATATAATTACAACCAT
GAAGCAGCATATTAAATTTGAACCATCGTGGATAGATTATTTAGAAGATC
CAGTTGATCCAAGTATTGGTGTTTGTGGCTACATAGAATGTGAACCTATT
TCTATATCTTTTCCTGAATCTACTGATATCAATATAAATATGATGCCCTT
TATTATGGAACAAGAATTTGAAAAGACTAAGTTACCAGAATATtcgagaa
aatattttgaaatgtttttgagcCCTCTTATATCAGAGTATGAGGAAATG
GGAAaagaaattggtaaaatttgttacCTAACTATACATGAGAGTTAGGT
TGAAGAAGGAAAATCACAGAGGAGACCAGGGCTACACACAGAATCACCTG
GTATAATTTACGTTAAAAATGGAATGAAAAGTGAGAAAATTAGAGAGCTG
TGTATTGAAAAGGGTTCCGGTAGGGGTGATACAGAAATTCCATGGGTTGT
TTGTTGGGGTGGACAATACGGTATGCATGGTGAAGTTTTTACTCCTTCTG
GGGGAATCTACATGGCATCTAATGTACCTAATTCATGTGAAGTTTGGGAT
TGTCAAATTGTAGCTAATGATAAAGGAGAAGAAATTATTGGGAAGTTTGG
AAATATTGAGCACTTGAGGGGCCTTCTGTCCGGCTCGAAGATTATGAAGT
CTGATGAATTGTATTGGATAACCGATCGTACACCTCACGAATCTCTGCCA
TTGAAGAAAGGAACATACAGACAGTTTTTTAGGCTTGTAACACAGAGAGT
TTCAGTTTGGTATGAAGATCATTCAACCAGAAATCCTAATGGTGTTGTCC
CTGATCCTAAGATAACAAGAATTCTGAGAGgatcaaaatttgatgaaggt
TCTGTAGCCATTGTTGGCTAAAATAACTTTGGTTTCAGGGATAAATAGTG
ATAAATAGAAAGGTAGAAGTCATTTGAAAGAATTAAGAAACTCATCTATG
ATTCAAAACTATAAATTTAAGTGATAtgaaccgtacatcctgtgcccaag
ttcaggagttgtcataaagccattatggtaacaaccgggagggcacattg
ctatacattgtaagTGATATGTTATAAAGTTAACTTAAGTTATATCAAAT
GATCAGCTCAATCTTCTATACTCGATGGTATTCACTTTCATAATTCGTCG
tccacatgactaaaggttcaatctcaaaataagtgtcttgtaaaattgga
aatcttgcaatTCTGTTCTGACTTTGAGATTAGcctttttgtcatatgaa
aacATTAACTATTCCTTTACATGAAAAAAGGGC Run BLAST on NCBI protein sequence of TCONS_00034884-protein >TCONS_00034884-protein ID=TCONS_00034884-protein|Name=TCONS_00034884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
EILNLIYFLLFLKCRYRFRKTYKHPLPDTMEYQRLQHIQLDQHLNPIARA
ILQGVNDENSPFSKLNGIPHVLQMIWRYIITTMKQHIKFEPSWIDYLEDP
VDPSIGVCGYIECEPISISFPESTDININMMPFIMEQEFEKTKLPEYSRK
YFEMFLSPLISEYEEMGKEIGKICYLTIHES Run BLAST on NCBI transcript from alignment at sc0001229:10872..12404 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034884 ID=TCONS_00034884|Name=TCONS_00034884|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0001229:10872..12404 (Clytia hemisphaerica)
GCCCTTTTTTCATGTAAAGGAATAGTTAATgttttcatatgacaaaaagg
CTAATCTCAAAGTCAGAACAGAattgcaagatttccaattttacaagaca
cttattttgagattgaacctttagtcatgtggaCGACGAATTATGAAAGT
GAATACCATCGAGTATAGAAGATTGAGCTGATCATTTGATATAACTTAAG
TTAACTTTATAACATATCActtacaatgtatagcaatgtgccctcccggt
tgttaccataatggctttatgacaactcctgaacttgggcacaggatgta
cggttcaTATCACTTAAATTTATAGTTTTGAATCATAGATGAGTTTCTTA
ATTCTTTCAAATGACTTCTACCTTTCTATTTATCACTATTTATCCCTGAA
ACCAAAGTTATTTTAGCCAACAATGGCTACAGAaccttcatcaaattttg
atcCTCTCAGAATTCTTGTTATCTTAGGATCAGGGACAACACCATTAGGA
TTTCTGGTTGAATGATCTTCATACCAAACTGAAACTCTCTGTGTTACAAG
CCTAAAAAACTGTCTGTATGTTCCTTTCTTCAATGGCAGAGATTCGTGAG
GTGTACGATCGGTTATCCAATACAATTCATCAGACTTCATAATCTTCGAG
CCGGACAGAAGGCCCCTCAAGTGCTCAATATTTCCAAACTTCCCAATAAT
TTCTTCTCCTTTATCATTAGCTACAATTTGACAATCCCAAACTTCACATG
AATTAGGTACATTAGATGCCATGTAGATTCCCCCAGAAGGAGTAAAAACT
TCACCATGCATACCGTATTGTCCACCCCAACAAACAACCCATGGAATTTC
TGTATCACCCCTACCGGAACCCTTTTCAATACACAGCTCTCTAATTTTCT
CACTTTTCATTCCATTTTTAACGTAAATTATACCAGGTGATTCTGTGTGT
AGCCCTGGTCTCCTCTGTGATTTTCCTTCTTCAACCTAACTCTCATGTAT
AGTTAGgtaacaaattttaccaatttcttTTCCCATTTCCTCATACTCTG
ATATAAGAGGgctcaaaaacatttcaaaatattttctcgaATATTCTGGT
AACTTAGTCTTTTCAAATTCTTGTTCCATAATAAAGGGCATCATATTTAT
ATTGATATCAGTAGATTCAGGAAAAGATATAGAAATAGGTTCACATTCTA
TGTAGCCACAAACACCAATACTTGGATCAACTGGATCTTCTAAATAATCT
ATCCACGATGGTTCAAATTTAATATGCTGCTTCATGGTTGTAATTATATA
TCGCCAAATCATTTGTAGAACATGGGGAATACCATTGAGTTTTGAAAATG
GACTGTTTTCATCGTTAACTCCTTGTAAAATGGCTCTGGCGATTGGGTTC
AAATGTTGATCGAGTTGAATGTGTTGTAATCTTTGATATTCCATTGTGTC
TGGTAAGGGATGTTTataagtttttctaaatctatatctacattttaaaa
acaaaagaaagtaaattaaattcaaaatttcaa Coding sequence (CDS) from alignment at sc0001229:10872..12404 >TCONS_00034884 ID=TCONS_00034884|Name=TCONS_00034884|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0001229:10872..12404 (Clytia hemisphaerica)
CTAACTCTCATGTATAGTTAGgtaacaaattttaccaatttcttTTCCCA
TTTCCTCATACTCTGATATAAGAGGgctcaaaaacatttcaaaatatttt
ctcgaATATTCTGGTAACTTAGTCTTTTCAAATTCTTGTTCCATAATAAA
GGGCATCATATTTATATTGATATCAGTAGATTCAGGAAAAGATATAGAAA
TAGGTTCACATTCTATGTAGCCACAAACACCAATACTTGGATCAACTGGA
TCTTCTAAATAATCTATCCACGATGGTTCAAATTTAATATGCTGCTTCAT
GGTTGTAATTATATATCGCCAAATCATTTGTAGAACATGGGGAATACCAT
TGAGTTTTGAAAATGGACTGTTTTCATCGTTAACTCCTTGTAAAATGGCT
CTGGCGATTGGGTTCAAATGTTGATCGAGTTGAATGTGTTGTAATCTTTG
ATATTCCATTGTGTCTGGTAAGGGATGTTTataagtttttctaaatctat
atctacattttaaaaacaaaagaaagtaaattaaattcaaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034884-exon-sc0001229-1491911889:10872..12404 | TCONS_00034884-exon-sc0001229-1491911889:10872..12404 | Clytia hemisphaerica | exon |
| TCONS_00034884-exon-sc0001229-1510915933:10872..12404 | TCONS_00034884-exon-sc0001229-1510915933:10872..12404 | Clytia hemisphaerica | exon |
| TCONS_00034884-exon-sc0001229-1575043694:10872..12404 | TCONS_00034884-exon-sc0001229-1575043694:10872..12404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:10872..12404 . |
Blast
The following BLAST results are available for this feature:
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