TCONS_00034882 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034882
Unique Name	TCONS_00034882
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001229:32431..36646-

transcript sequence

>TCONS_00034882 ID=TCONS_00034882|Name=TCONS_00034882|organism=Clytia hemisphaerica|type=transcript|length=957bp
GTTGTTGTCTTACTTCCAAgctccaaaagttcaaaagAACACAATCTTGG
CTTCAAGTACATTTGACGAGACAAGTTATATATCAAAAACGAAATTATCT
GAATCAGAGGATCCATACCATAGACACAAATTCAACCAACAAATCAGTGA
TGAGTTGGATAGCGATAGGCCAATCCCTGATACGCGCCCGCCACAATGTT
TAGAGGAGAGTTATGACAAGCGGTTGTCCAGCACTTCGATTATCATCACT
TTTCATAATGAAGCGAGGTCAGCTTTGCTACGGACTATTAAAAGCGTACT
GGATAGAACACCGCCTCACCTACTAACGGAGATTATCCTGGTTGATGATT
TTAGTGCCAATGAAAAAGATGGTGCTTCGTTGAAAGACCTACCCAAAATT
GTTTTGATGAGGAACGGCAAACGAGAAGGGTTAATTCGTTCACGTTTGAA
AGGTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACT
GTGAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAG
GATCCACTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACGGATAC
GTTGGAATATAAAGCCTCTTCAAATTACTTGAAAGGAgGATTTGACTGGA
ACATGCATTTTATTTGGGAGCCattatttgaaaaagaaatgaaagaacAA
AAAGCTGATCCAACTCACCCAATCAGTACACCAGTAATTGCAGGTGGTCT
ATTTGCTGTTCAGAAACAATGGTTCAATCAACTTGGACAATACGATTCTT
TGCTAGAAATATGGGGTGCGGAAAACTTCGaaatttcattcaaaaccTGG
ATGTGTGGTGGAAGTATGAAAATCATTCCTTGCTCACGAGTTGGTCATAT
CTTTCGTAAATCTCACCCTTATGAGTTTCCTCTTGGCAATGGACACACGT
ACCTTAT

Run BLAST on NCBI

transcript from alignment at sc0001229:32431..36646-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034882 ID=TCONS_00034882|Name=TCONS_00034882|organism=Clytia hemisphaerica|type=transcript|length=4216bp|location=Sequence derived from alignment at sc0001229:32431..36646- (Clytia hemisphaerica)
GTTGTTGTCTTACTTCCAAGCTCCAAAAGTTCAAAAGGTATACAGTTTCA
TTCAAAGATTAGTTTTAAGAATAAAGAAAAAAATGTTTAAATTGCAAAAT
CCTTTTATTCCAGACTTTTGCTACTGTTTTCAGCATATGTATTTTCAGGG
GTCCAAAACAGGAGATTTTACACGAGCTTTTGCCCAAAACGATATTCCTA
TAATCTTTTAGAACACAATCTTGGCTTCAAGTACATTTGACGAGACAAGT
TATATATCAAAAACGAAATTATCTGAATCAGAGGATCCATACCATAGACA
CAAATTCAACCAACAAATCAGTGATGAGTTGGATAGCGATAGGCCAATCC
CTGATACGCGCCCGCCACAGTAAAGTTAACAATTTATTTTTTTCTAAATC
GGAAATTATTTATTCAAAAAATATGAAATGCTTGGGGGAAGGAATGTGTG
TTTTTGGCTACAGAACGGAAGTCTGCTTTTGAAACTGGAAACTTGAGACC
TTGCATTATTTATAACTCTTACATTTTCAAAGATTAAATGACAGATTACC
AACTTTCTGCCTGTCCTTAGTACTTGGTTTCTTTACTATACTAACTTAAC
TTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACTTGTGTT
CGTTCGTCCGTTCGTCCGTCCGTTCGTCTGTTACCAACTTTTCTCAGGAT
TGAATCATAGGAATCTTTTGATTTTTAGTACAAAGGTGCAAAATGGTGGT
GGCCAAAATGTGACGGAGCCCGATTTTCGAAAAATAATGTTTTTGGGCAA
ATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTATTATTATATTGGATCA
TTGTTTTTTTCAGATTATTTTGCATGAAAGTAGGTAAAAGATGGCTCAAG
CAGATTTTTGTTAAAAAAGAATTTTTCAACTCAAAAAAACGCATCTTTGT
CTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCTAAATTA
CTAAATTTTTTGATGAGATAGATGATTTTTTTGCTCACGAAGTCTTGAAT
ATGAAAGAATATTTCAAGAGTATGAAATTTTGGTTTCTAAACGTTTTTTT
ATAAGAAACAAACGACTAATTTTAATAGATCGTCACTACTTGTGTTCTGA
ATGATTGTTTAACGGTCATGCTCACGTAGATATCAATTATATCAGATTAT
ATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATG
TTTTGTATCTAGATGTTTAGAGGAGAGTTATGACAAGCGGTTGTCCAGCA
CTTCGATTATCATCACTTTTCATAATGAAGCGAGGTCAGCTTTGCTACGG
ACTATTAAAAGGTAAATCAAAATACAGTTGTACAGGCAATATGAATACAT
GTGTTTTGATTACAGCTGCCTTTTTCTCTATTTTTATCCTTACACATTGC
TCAAATTTTGCAGTTTCGTGCTAAGGATCGTTTCTCATCATGATCTTCTT
ACCTTTTGATATTTTTAGATTTGTTGTTCTTATACGGCGCGGCCTCCGTA
ATGTTAATGAACGTAATATCTTTCCTTGATTATCATACATTATTATATCT
TATACTTTCAGCGTACTGGATAGAACACCGCCTCACCTACTAACGGAGAT
TATCCTGGTTGATGATTTTAGTGCCAATGGTAAGTGAATACATAAAATTG
TGTTCGGAACAGCCAACTAAAAAACTTGGGGGTGTAATTGATGTTTCCAT
CTAGCTTATTTTTCAATTTTTAACCGTTTCTTCCATAGAAAAAGATGGTG
CTTCGTTGAAAGACCTACCCAAAATTGTTTTGATGAGGAACGGCAAACGA
GAAGGTGTGTATTCATTTCTTTTCATGGGAACCCATTCTCCCAGTGAAGT
TTATTGAAAATTAACGGAGGACGGTGGTTGAAGTAGGAGCGCGCTTTTCT
TGTAGCCTAAAGAATGTAGGTTCAAGCCCAACGTGTATCGACTATCTTAG
CGAGGATCAAAATGACTATTTTAGATATGCGTTTTACTTGGTTTTACTGA
ATTCTTATTGGAAGAGGCATTTTTAGTGTTGATGCTAGTTCAGACAACGT
TCAATCAAAAACTCACAAAAATGCGCGAATTGGTTGAATCCTTCAACTCA
TTTCTAACTTTCCCCTTTCTTCTTTTTAGGGTTAATTCGTTCACGTTTGA
AAGGTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCAC
TGTGAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACA
GGTTCAAAGATTATCGCCGTAAACCCCAAATCTTGTCAATATGTAACTTT
CGATTTCTATCGAATACAGTTTGTAGCAAAGCAAAAAAAAAAGACATTAT
GAAAAAAAATTAAAATATTGTGTTACCCTGGGATGTAGAATCCAATCTAT
TTTTGTTAATTCTACATATTTCTAAAATTATAGGATCCACTTGCGATAGC
TTCACCGGTGATTGACATCATCAAAACGGATACGTTGGAATATAAAGCCT
CTTCAAATTACTTGAAAGGAGGTATTTTTTTGTAAACACTTCGGAGAAAT
CTTTCCTTGAGATGAACATCTCGAGCATGATAGGGTGAATGTCTTCATTG
CTTCATAATACAGTAACCCTAACCTCTAATTAGCCATCTTAGAAGTTGAC
TACATAGTAAAAAACATAGAAATGCAGTAATAAATTTACTGATTAATTTA
CTGACTCTCTGCTAATCAAGATTTTCAAGATTCGCTTTTTCTTACTGTTT
ATTTACTGTTCTTTTTTCAGTATGAATTTCTGCATTCACCTTTCAACTAA
TGATTTAACATCAACTCACTGCTCAAAAAACACTTACAACTAATTCGCAA
TCCTAATCGATACAAGGTGAGTTTTGTAAGCCAAAGTCAATGTTGGCCAT
CACTTTAAAACATGTTTTTAAAACTTGGTTTAAGAAGTTAGTTTGGTTGC
AGTTTTTTTTTTAATTATGACTCATTCGGCATTACATCCAGTGTTAGTTA
TGTTTTATTAAATACTACATAGTAATGGAAATTAATTGTATAATCAAAAG
TTTGCTTTAGGTTTGCTGTTTTGAGCAATCTTTGTCTATCTCTGTCAGTT
TTTTGTTTTTACTGACTAGCTACGAGATCCTTATTCTACGTGTCTTGCTG
TTTGGAAACCATTTCACTGGTTTCATTCATCCCTTGATTTTTTCCCAAAA
AAAATCAATATATTATAAAACGTTTTTGATGGATTAAACACAACGATTTC
TCCATTTGCACAACTGCCACTTGCACAAAAAGATTCTAAATATGTACTAT
AATGATTTCATAGGATTTGACTGGAACATGCATTTTATTTGGGAGCCATT
ATTTGAAAAAGAAATGAAAGAACAAAAAGCTGATCCAACTCACCCAATCA
GGTAACAACTTGGGAAAAGAAATTCACTGCTTTAGGGATATGCGAAGCCT
TCAAATGTTCTCAACAAGTTCTTAATATATTGGTAATCGAAGCCTTTTTG
TTCTTTTACACTTTGTTCTAAAAAAAACAATGTTTAGCTGGCGTTGTTGT
CTTAAAGATATATAGTTATGTTAATATTTTGTTAAGATGAAATAAACTTG
TCCCAGTCTTGGGAATAATACATGTATGAACCCTTAAACGTTTAAAGGTA
GCTGATTTCTAAAACCTTTTTGAACTATCTTTTGTGAAGTTTTTAAAATC
TTTCCCATAGTACACCAGTAATTGCAGGTGGTCTATTTGCTGTTCAGAAA
CAATGGTTCAATCAACTTGGACAATACGATTCTTTGCTAGAAATATGGGG
TGCGGAAAACTTCGGTAAGATAATCTTTCATAACATTTTTTGACTTGGAC
TTCAATCAAGAATTACTTCAGGACATAATCTGTGGCTCTTTGGATTCAGA
AATTCTCAAAACCTTAAAGTCAACTGACGCATGACCTCGCTAAAGTCAGA
AATAAAGAAACTTAAAAATTGATGAATTTAGAAAGTATTTCTTTATTTGC
TTCCCCTTATATAACTAAGATAACTTTTCTTTTTCTCAGAAATTTCATTC
AAAACCTGGATGTGTGGTGGAAGTATGAAAATCATTCCTTGCTCACGAGT
TGGTCATATCTTTCGTAAATCTCACCCTTATGAGTTTCCTCTTGGCAATG
GACACACGTACCTTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020293	XLOC_020293	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001229	supercontig	sc0001229:32431..36646 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36789	0	0	0.986948	0	0	3.39775	2.19629	3.53118	2.45867	2.54078	2.49441	6.04311	4.7171	6.89641	4.86745	3.33325	5.49175	5.95974	6.09342	2.93877	2.53975	0	2.43024	4.57757	6.08858	0	0	7.28044	7.96766

Blast

[Close]

BLAST of TCONS_00034882 vs. Swiss-Prot (Human)
Match: GLT16 (Polypeptide N-acetylgalactosaminyltransferase 16 OS=Homo sapiens GN=GALNT16 PE=1 SV=2)

HSP 1 Score: 380.948 bits (977), Expect = 4.559e-128
Identity = 174/303 (57.43%), Postives = 223/303 (73.60%), Query Frame = 2

Query:   53 SSTFDETSYISKTKLSESEDPYHRHKFNQQISDELDSDRPIPDTRPPQCLEESYDKRLSSTSIIITFHNEARSALLRTIKSVLDRTPPHLLTEIILVDDFSANEKDGASLKDLPKIVLMRNGKREGLIRSRLKGVSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTLEYKASSNYLKGGFDWNMHFIWE--PLFEKEMKEQKADPTHPISTPVIAGGLFAVQKQWFNQLGQYDSLLEIWGAENFEISFKTWMCGGSMKIIPCSRVGHIFRKSHPYEFPLGNGHTYL 955
            S  FDE +Y+S  +L   EDPY +H FNQ  SD+L  DRPI DTR   C   SY   L +TS+IITFHNEARS LLRT+KSVL+RTP +L+ EIILVDDFS++ +D   L  +PK+  +RN +REGLIRSR++G  VA +++LTFLDSHCEVN  W+ P+L +V++D   + SP+ID+I  D   Y A+S  L+GGFDW++HF WE  PL   E K  + DPT PI TPVIAGG+F + K WFN LG+YD+ ++IWG ENFE+SF+ WMCGGS++I+PCSRVGH+FRK HPY FP GN  TY+
Sbjct:   65 SKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPSVSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDPEDCLLLTRIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQRVKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPL---EQKMTRTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGHVFRKRHPYNFPEGNALTYI 364

The following BLAST results are available for this feature:

BLAST of TCONS_00034882 vs. Swiss-Prot (Human)

BLAST of TCONS_00034882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLT16	4.559e-128	57.43	Polypeptide N-acetylgalactosaminyltransferase 16 O...	[more]

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TCONS_00034882 (transcript) - C. hemisphaerica