TCONS_00034881 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034881
Unique Name	TCONS_00034881
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1050

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001229:32431..36643-
coding sequence from alignment at sc0001229:32431..36643-

transcript sequence

>TCONS_00034881 ID=TCONS_00034881|Name=TCONS_00034881|organism=Clytia hemisphaerica|type=transcript|length=1050bp
GTTGTCTTACTTCCAAgctccaaaagttcaaaagAACACAATCTTGGCTT
CAAGTACATTTGACGAGACAAGTTATATATCAAAAACGAAATTATCTGAA
TCAGAGGATCCATACCATAGACACAAATTCAACCAACAAATCAGTGATGA
GTTGGATAGCGATAGGCCAATCCCTGATACGCGCCCGCCACAATGTTTAG
AGGAGAGTTATGACAAGCGGTTGTCCAGCACTTCGATTATCATCACTTTT
CATAATGAAGCGAGGTCAGCTTTGCTACGGACTATTAAAAGCGTACTGGA
TAGAACACCGCCTCACCTACTAACGGAGATTATCCTGGTTGATGATTTTA
GTGCCAATGAAAAAGATGGTGCTTCGTTGAAAGACCTACCCAAAATTGTT
TTGATGAGGAACGGCAAACGAGAAGGGTTAATTCGTTCACGTTTGAAAGG
TGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACTGTG
AAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAGGAT
CCACTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACGGATACGTT
GGAATATAAAGCCTCTTCAAATTACTTGAAAGGAgTATGAATTTCTGCAT
TCACCTTTCAACTAATGATTTAACATCAACTCACTGCTCAAAAAACACTT
ACAACTAATTCGCAATCCTAATCGATACAAGGATTTGACTGGAACATGCA
TTTTATTTGGGAGCCattatttgaaaaagaaatgaaagaacAAAAAGCTG
ATCCAACTCACCCAATCAGTACACCAGTAATTGCAGGTGGTCTATTTGCT
GTTCAGAAACAATGGTTCAATCAACTTGGACAATACGATTCTTTGCTAGA
AATATGGGGTGCGGAAAACTTCGaaatttcattcaaaaccTGGATGTGTG
GTGGAAGTATGAAAATCATTCCTTGCTCACGAGTTGGTCATATCTTTCGT
AAATCTCACCCTTATGAGTTTCCTCTTGGCAATGGACACACGTACCTTAT

Run BLAST on NCBI

protein sequence of TCONS_00034881-protein

>TCONS_00034881-protein ID=TCONS_00034881-protein|Name=TCONS_00034881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
LSYFQAPKVQKNTILASSTFDETSYISKTKLSESEDPYHRHKFNQQISDE
LDSDRPIPDTRPPQCLEESYDKRLSSTSIIITFHNEARSALLRTIKSVLD
RTPPHLLTEIILVDDFSANEKDGASLKDLPKIVLMRNGKREGLIRSRLKG
VSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTL
EYKASSNYLKGV

Run BLAST on NCBI

transcript from alignment at sc0001229:32431..36643-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034881 ID=TCONS_00034881|Name=TCONS_00034881|organism=Clytia hemisphaerica|type=transcript|length=4213bp|location=Sequence derived from alignment at sc0001229:32431..36643- (Clytia hemisphaerica)
GTTGTCTTACTTCCAAGCTCCAAAAGTTCAAAAGGTATACAGTTTCATTC
AAAGATTAGTTTTAAGAATAAAGAAAAAAATGTTTAAATTGCAAAATCCT
TTTATTCCAGACTTTTGCTACTGTTTTCAGCATATGTATTTTCAGGGGTC
CAAAACAGGAGATTTTACACGAGCTTTTGCCCAAAACGATATTCCTATAA
TCTTTTAGAACACAATCTTGGCTTCAAGTACATTTGACGAGACAAGTTAT
ATATCAAAAACGAAATTATCTGAATCAGAGGATCCATACCATAGACACAA
ATTCAACCAACAAATCAGTGATGAGTTGGATAGCGATAGGCCAATCCCTG
ATACGCGCCCGCCACAGTAAAGTTAACAATTTATTTTTTTCTAAATCGGA
AATTATTTATTCAAAAAATATGAAATGCTTGGGGGAAGGAATGTGTGTTT
TTGGCTACAGAACGGAAGTCTGCTTTTGAAACTGGAAACTTGAGACCTTG
CATTATTTATAACTCTTACATTTTCAAAGATTAAATGACAGATTACCAAC
TTTCTGCCTGTCCTTAGTACTTGGTTTCTTTACTATACTAACTTAACTTT
TTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACTTGTGTTCGT
TCGTCCGTTCGTCCGTCCGTTCGTCTGTTACCAACTTTTCTCAGGATTGA
ATCATAGGAATCTTTTGATTTTTAGTACAAAGGTGCAAAATGGTGGTGGC
CAAAATGTGACGGAGCCCGATTTTCGAAAAATAATGTTTTTGGGCAAATT
TGGGCCAAAAAACGGCTAAAAAACGGGTTTATTATTATATTGGATCATTG
TTTTTTTCAGATTATTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAG
ATTTTTGTTAAAAAAGAATTTTTCAACTCAAAAAAACGCATCTTTGTCTA
TAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCTAAATTACTA
AATTTTTTGATGAGATAGATGATTTTTTTGCTCACGAAGTCTTGAATATG
AAAGAATATTTCAAGAGTATGAAATTTTGGTTTCTAAACGTTTTTTTATA
AGAAACAAACGACTAATTTTAATAGATCGTCACTACTTGTGTTCTGAATG
ATTGTTTAACGGTCATGCTCACGTAGATATCAATTATATCAGATTATATG
TGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATGTTT
TGTATCTAGATGTTTAGAGGAGAGTTATGACAAGCGGTTGTCCAGCACTT
CGATTATCATCACTTTTCATAATGAAGCGAGGTCAGCTTTGCTACGGACT
ATTAAAAGGTAAATCAAAATACAGTTGTACAGGCAATATGAATACATGTG
TTTTGATTACAGCTGCCTTTTTCTCTATTTTTATCCTTACACATTGCTCA
AATTTTGCAGTTTCGTGCTAAGGATCGTTTCTCATCATGATCTTCTTACC
TTTTGATATTTTTAGATTTGTTGTTCTTATACGGCGCGGCCTCCGTAATG
TTAATGAACGTAATATCTTTCCTTGATTATCATACATTATTATATCTTAT
ACTTTCAGCGTACTGGATAGAACACCGCCTCACCTACTAACGGAGATTAT
CCTGGTTGATGATTTTAGTGCCAATGGTAAGTGAATACATAAAATTGTGT
TCGGAACAGCCAACTAAAAAACTTGGGGGTGTAATTGATGTTTCCATCTA
GCTTATTTTTCAATTTTTAACCGTTTCTTCCATAGAAAAAGATGGTGCTT
CGTTGAAAGACCTACCCAAAATTGTTTTGATGAGGAACGGCAAACGAGAA
GGTGTGTATTCATTTCTTTTCATGGGAACCCATTCTCCCAGTGAAGTTTA
TTGAAAATTAACGGAGGACGGTGGTTGAAGTAGGAGCGCGCTTTTCTTGT
AGCCTAAAGAATGTAGGTTCAAGCCCAACGTGTATCGACTATCTTAGCGA
GGATCAAAATGACTATTTTAGATATGCGTTTTACTTGGTTTTACTGAATT
CTTATTGGAAGAGGCATTTTTAGTGTTGATGCTAGTTCAGACAACGTTCA
ATCAAAAACTCACAAAAATGCGCGAATTGGTTGAATCCTTCAACTCATTT
CTAACTTTCCCCTTTCTTCTTTTTAGGGTTAATTCGTTCACGTTTGAAAG
GTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACTGT
GAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAGGT
TCAAAGATTATCGCCGTAAACCCCAAATCTTGTCAATATGTAACTTTCGA
TTTCTATCGAATACAGTTTGTAGCAAAGCAAAAAAAAAAGACATTATGAA
AAAAAATTAAAATATTGTGTTACCCTGGGATGTAGAATCCAATCTATTTT
TGTTAATTCTACATATTTCTAAAATTATAGGATCCACTTGCGATAGCTTC
ACCGGTGATTGACATCATCAAAACGGATACGTTGGAATATAAAGCCTCTT
CAAATTACTTGAAAGGAGGTATTTTTTTGTAAACACTTCGGAGAAATCTT
TCCTTGAGATGAACATCTCGAGCATGATAGGGTGAATGTCTTCATTGCTT
CATAATACAGTAACCCTAACCTCTAATTAGCCATCTTAGAAGTTGACTAC
ATAGTAAAAAACATAGAAATGCAGTAATAAATTTACTGATTAATTTACTG
ACTCTCTGCTAATCAAGATTTTCAAGATTCGCTTTTTCTTACTGTTTATT
TACTGTTCTTTTTTCAGTATGAATTTCTGCATTCACCTTTCAACTAATGA
TTTAACATCAACTCACTGCTCAAAAAACACTTACAACTAATTCGCAATCC
TAATCGATACAAGGTGAGTTTTGTAAGCCAAAGTCAATGTTGGCCATCAC
TTTAAAACATGTTTTTAAAACTTGGTTTAAGAAGTTAGTTTGGTTGCAGT
TTTTTTTTTAATTATGACTCATTCGGCATTACATCCAGTGTTAGTTATGT
TTTATTAAATACTACATAGTAATGGAAATTAATTGTATAATCAAAAGTTT
GCTTTAGGTTTGCTGTTTTGAGCAATCTTTGTCTATCTCTGTCAGTTTTT
TGTTTTTACTGACTAGCTACGAGATCCTTATTCTACGTGTCTTGCTGTTT
GGAAACCATTTCACTGGTTTCATTCATCCCTTGATTTTTTCCCAAAAAAA
ATCAATATATTATAAAACGTTTTTGATGGATTAAACACAACGATTTCTCC
ATTTGCACAACTGCCACTTGCACAAAAAGATTCTAAATATGTACTATAAT
GATTTCATAGGATTTGACTGGAACATGCATTTTATTTGGGAGCCATTATT
TGAAAAAGAAATGAAAGAACAAAAAGCTGATCCAACTCACCCAATCAGGT
AACAACTTGGGAAAAGAAATTCACTGCTTTAGGGATATGCGAAGCCTTCA
AATGTTCTCAACAAGTTCTTAATATATTGGTAATCGAAGCCTTTTTGTTC
TTTTACACTTTGTTCTAAAAAAAACAATGTTTAGCTGGCGTTGTTGTCTT
AAAGATATATAGTTATGTTAATATTTTGTTAAGATGAAATAAACTTGTCC
CAGTCTTGGGAATAATACATGTATGAACCCTTAAACGTTTAAAGGTAGCT
GATTTCTAAAACCTTTTTGAACTATCTTTTGTGAAGTTTTTAAAATCTTT
CCCATAGTACACCAGTAATTGCAGGTGGTCTATTTGCTGTTCAGAAACAA
TGGTTCAATCAACTTGGACAATACGATTCTTTGCTAGAAATATGGGGTGC
GGAAAACTTCGGTAAGATAATCTTTCATAACATTTTTTGACTTGGACTTC
AATCAAGAATTACTTCAGGACATAATCTGTGGCTCTTTGGATTCAGAAAT
TCTCAAAACCTTAAAGTCAACTGACGCATGACCTCGCTAAAGTCAGAAAT
AAAGAAACTTAAAAATTGATGAATTTAGAAAGTATTTCTTTATTTGCTTC
CCCTTATATAACTAAGATAACTTTTCTTTTTCTCAGAAATTTCATTCAAA
ACCTGGATGTGTGGTGGAAGTATGAAAATCATTCCTTGCTCACGAGTTGG
TCATATCTTTCGTAAATCTCACCCTTATGAGTTTCCTCTTGGCAATGGAC
ACACGTACCTTAT

Coding sequence (CDS) from alignment at sc0001229:32431..36643-

>TCONS_00034881 ID=TCONS_00034881|Name=TCONS_00034881|organism=Clytia hemisphaerica|type=CDS|length=5112bp|location=Sequence derived from alignment at sc0001229:32431..36643- (Clytia hemisphaerica)
TATGAGATCCACTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACG
GATACGTTGGAATATAAAGCCTCTTCAAATTACTTGAAAGGAGGGTTAAT
TCGTTCACGTTTGAAAGGTGTGAGCGTCGCCAAGTCATCCATCTTAACAT
TCCTTGATAGCCACTGTGAAGTGAACGTCGGTTGGATTGAACCATTGCTA
GCACAAGTTGAACAGAAAAAGATGGTGCTTCGTTGAAAGACCTACCCAAA
ATTGTTTTGATGAGGAACGGCAAACGAGAAGCGTACTGGATAGAACACCG
CCTCACCTACTAACGGAGATTATCCTGGTTGATGATTTTAGTGCCAATGA
TGTTTAGAGGAGAGTTATGACAAGCGGTTGTCCAGCACTTCGATTATCAT
CACTTTTCATAATGAAGCGAGGTCAGCTTTGCTACGGACTATTAAAAGAA
CACAATCTTGGCTTCAAGTACATTTGACGAGACAAGTTATATATCAAAAA
CGAAATTATCTGAATCAGAGGATCCATACCATAGACACAAATTCAACCAA
CAAATCAGTGATGAGTTGGATAGCGATAGGCCAATCCCTGATACGCGCCC
GCCACATTGTCTTACTTCCAAGCTCCAAAAGTTCAAAAGTATGAGATCCA
CTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACGGATACGTTGGA
ATATAAAGCCTCTTCAAATTACTTGAAAGGAGGGTTAATTCGTTCACGTT
TGAAAGGTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGC
CACTGTGAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGA
ACAGAAAAAGATGGTGCTTCGTTGAAAGACCTACCCAAAATTGTTTTGAT
GAGGAACGGCAAACGAGAAGCGTACTGGATAGAACACCGCCTCACCTACT
AACGGAGATTATCCTGGTTGATGATTTTAGTGCCAATGATGTTTAGAGGA
GAGTTATGACAAGCGGTTGTCCAGCACTTCGATTATCATCACTTTTCATA
ATGAAGCGAGGTCAGCTTTGCTACGGACTATTAAAAGAACACAATCTTGG
CTTCAAGTACATTTGACGAGACAAGTTATATATCAAAAACGAAATTATCT
GAATCAGAGGATCCATACCATAGACACAAATTCAACCAACAAATCAGTGA
TGAGTTGGATAGCGATAGGCCAATCCCTGATACGCGCCCGCCACATTGTC
TTACTTCCAAGCTCCAAAAGTTCAAAAGTATGAGATCCACTTGCGATAGC
TTCACCGGTGATTGACATCATCAAAACGGATACGTTGGAATATAAAGCCT
CTTCAAATTACTTGAAAGGAGGGTTAATTCGTTCACGTTTGAAAGGTGTG
AGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACTGTGAAGT
GAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAGAAAAAGA
TGGTGCTTCGTTGAAAGACCTACCCAAAATTGTTTTGATGAGGAACGGCA
AACGAGAAGCGTACTGGATAGAACACCGCCTCACCTACTAACGGAGATTA
TCCTGGTTGATGATTTTAGTGCCAATGATGTTTAGAGGAGAGTTATGACA
AGCGGTTGTCCAGCACTTCGATTATCATCACTTTTCATAATGAAGCGAGG
TCAGCTTTGCTACGGACTATTAAAAGAACACAATCTTGGCTTCAAGTACA
TTTGACGAGACAAGTTATATATCAAAAACGAAATTATCTGAATCAGAGGA
TCCATACCATAGACACAAATTCAACCAACAAATCAGTGATGAGTTGGATA
GCGATAGGCCAATCCCTGATACGCGCCCGCCACATTGTCTTACTTCCAAG
CTCCAAAAGTTCAAAAGTATGAGATCCACTTGCGATAGCTTCACCGGTGA
TTGACATCATCAAAACGGATACGTTGGAATATAAAGCCTCTTCAAATTAC
TTGAAAGGAGGGTTAATTCGTTCACGTTTGAAAGGTGTGAGCGTCGCCAA
GTCATCCATCTTAACATTCCTTGATAGCCACTGTGAAGTGAACGTCGGTT
GGATTGAACCATTGCTAGCACAAGTTGAACAGAAAAAGATGGTGCTTCGT
TGAAAGACCTACCCAAAATTGTTTTGATGAGGAACGGCAAACGAGAAGCG
TACTGGATAGAACACCGCCTCACCTACTAACGGAGATTATCCTGGTTGAT
GATTTTAGTGCCAATGATGTTTAGAGGAGAGTTATGACAAGCGGTTGTCC
AGCACTTCGATTATCATCACTTTTCATAATGAAGCGAGGTCAGCTTTGCT
ACGGACTATTAAAAGAACACAATCTTGGCTTCAAGTACATTTGACGAGAC
AAGTTATATATCAAAAACGAAATTATCTGAATCAGAGGATCCATACCATA
GACACAAATTCAACCAACAAATCAGTGATGAGTTGGATAGCGATAGGCCA
ATCCCTGATACGCGCCCGCCACATTGTCTTACTTCCAAGCTCCAAAAGTT
CAAAAGTATGAGATCCACTTGCGATAGCTTCACCGGTGATTGACATCATC
AAAACGGATACGTTGGAATATAAAGCCTCTTCAAATTACTTGAAAGGAGG
GTTAATTCGTTCACGTTTGAAAGGTGTGAGCGTCGCCAAGTCATCCATCT
TAACATTCCTTGATAGCCACTGTGAAGTGAACGTCGGTTGGATTGAACCA
TTGCTAGCACAAGTTGAACAGAAAAAGATGGTGCTTCGTTGAAAGACCTA
CCCAAAATTGTTTTGATGAGGAACGGCAAACGAGAAGCGTACTGGATAGA
ACACCGCCTCACCTACTAACGGAGATTATCCTGGTTGATGATTTTAGTGC
CAATGATGTTTAGAGGAGAGTTATGACAAGCGGTTGTCCAGCACTTCGAT
TATCATCACTTTTCATAATGAAGCGAGGTCAGCTTTGCTACGGACTATTA
AAAGAACACAATCTTGGCTTCAAGTACATTTGACGAGACAAGTTATATAT
CAAAAACGAAATTATCTGAATCAGAGGATCCATACCATAGACACAAATTC
AACCAACAAATCAGTGATGAGTTGGATAGCGATAGGCCAATCCCTGATAC
GCGCCCGCCACATTGTCTTACTTCCAAGCTCCAAAAGTTCAAAAGTATGA
GATCCACTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACGGATAC
GTTGGAATATAAAGCCTCTTCAAATTACTTGAAAGGAGGGTTAATTCGTT
CACGTTTGAAAGGTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTT
GATAGCCACTGTGAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACA
AGTTGAACAGAAAAAGATGGTGCTTCGTTGAAAGACCTACCCAAAATTGT
TTTGATGAGGAACGGCAAACGAGAAGCGTACTGGATAGAACACCGCCTCA
CCTACTAACGGAGATTATCCTGGTTGATGATTTTAGTGCCAATGATGTTT
AGAGGAGAGTTATGACAAGCGGTTGTCCAGCACTTCGATTATCATCACTT
TTCATAATGAAGCGAGGTCAGCTTTGCTACGGACTATTAAAAGAACACAA
TCTTGGCTTCAAGTACATTTGACGAGACAAGTTATATATCAAAAACGAAA
TTATCTGAATCAGAGGATCCATACCATAGACACAAATTCAACCAACAAAT
CAGTGATGAGTTGGATAGCGATAGGCCAATCCCTGATACGCGCCCGCCAC
ATTGTCTTACTTCCAAGCTCCAAAAGTTCAAAAGTATGAGATCCACTTGC
GATAGCTTCACCGGTGATTGACATCATCAAAACGGATACGTTGGAATATA
AAGCCTCTTCAAATTACTTGAAAGGAGGGTTAATTCGTTCACGTTTGAAA
GGTGTGAGCGTCGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACTG
TGAAGTGAACGTCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAGA
AAAAGATGGTGCTTCGTTGAAAGACCTACCCAAAATTGTTTTGATGAGGA
ACGGCAAACGAGAAGCGTACTGGATAGAACACCGCCTCACCTACTAACGG
AGATTATCCTGGTTGATGATTTTAGTGCCAATGATGTTTAGAGGAGAGTT
ATGACAAGCGGTTGTCCAGCACTTCGATTATCATCACTTTTCATAATGAA
GCGAGGTCAGCTTTGCTACGGACTATTAAAAGAACACAATCTTGGCTTCA
AGTACATTTGACGAGACAAGTTATATATCAAAAACGAAATTATCTGAATC
AGAGGATCCATACCATAGACACAAATTCAACCAACAAATCAGTGATGAGT
TGGATAGCGATAGGCCAATCCCTGATACGCGCCCGCCACATTGTCTTACT
TCCAAGCTCCAAAAGTTCAAAAGTATGAGATCCACTTGCGATAGCTTCAC
CGGTGATTGACATCATCAAAACGGATACGTTGGAATATAAAGCCTCTTCA
AATTACTTGAAAGGAGGGTTAATTCGTTCACGTTTGAAAGGTGTGAGCGT
CGCCAAGTCATCCATCTTAACATTCCTTGATAGCCACTGTGAAGTGAACG
TCGGTTGGATTGAACCATTGCTAGCACAAGTTGAACAGAAAAAGATGGTG
CTTCGTTGAAAGACCTACCCAAAATTGTTTTGATGAGGAACGGCAAACGA
GAAGCGTACTGGATAGAACACCGCCTCACCTACTAACGGAGATTATCCTG
GTTGATGATTTTAGTGCCAATGATGTTTAGAGGAGAGTTATGACAAGCGG
TTGTCCAGCACTTCGATTATCATCACTTTTCATAATGAAGCGAGGTCAGC
TTTGCTACGGACTATTAAAAGAACACAATCTTGGCTTCAAGTACATTTGA
CGAGACAAGTTATATATCAAAAACGAAATTATCTGAATCAGAGGATCCAT
ACCATAGACACAAATTCAACCAACAAATCAGTGATGAGTTGGATAGCGAT
AGGCCAATCCCTGATACGCGCCCGCCACATTGTCTTACTTCCAAGCTCCA
AAAGTTCAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020293	XLOC_020293	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00034881-protein	TCONS_00034881-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001229	supercontig	sc0001229:32431..36643 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13839	3.57121	1.02781	0.295889	1.06458	0.763616	0.681883	0.710584	0	1.80461	3.06599	0.26831	0.956618	0	0	0	3.02346	0	0.30258	1.65254e-06	0.660901	1.15509	4.93266	2.73392	0	3.12389e-06	3.35614	3.42038	0.00122942	0.316379

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001173	Glyco_trans_2-like
IPR029044	Nucleotide-diphossugar_trans

Blast

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BLAST of TCONS_00034881 vs. Swiss-Prot (Human)
Match: GLT16 (Polypeptide N-acetylgalactosaminyltransferase 16 OS=Homo sapiens GN=GALNT16 PE=1 SV=2)

HSP 1 Score: 368.622 bits (945), Expect = 9.040e-123
Identity = 174/335 (51.94%), Postives = 223/335 (66.57%), Query Frame = 2

Query:   50 SSTFDETSYISKTKLSESEDPYHRHKFNQQISDELDSDRPIPDTRPPQCLEESYDKRLSSTSIIITFHNEARSALLRTIKSVLDRTPPHLLTEIILVDDFSANEKDGASLKDLPKIVLMRNGKREGLIRSRLKGVSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTLEYKASSNYLKGV*ISAFTFQLMI*HQLTAQKTLTTNSQS*SIQGFDWNMHFIWE--PLFEKEMKEQKADPTHPISTPVIAGGLFAVQKQWFNQLGQYDSLLEIWGAENFEISFKTWMCGGSMKIIPCSRVGHIFRKSHPYEFPLGNGHTYL 1048
            S  FDE +Y+S  +L   EDPY +H FNQ  SD+L  DRPI DTR   C   SY   L +TS+IITFHNEARS LLRT+KSVL+RTP +L+ EIILVDDFS++ +D   L  +PK+  +RN +REGLIRSR++G  VA +++LTFLDSHCEVN  W+ P+L +V++D   + SP+ID+I  D   Y A+S  L+G                                GFDW++HF WE  PL   E K  + DPT PI TPVIAGG+F + K WFN LG+YD+ ++IWG ENFE+SF+ WMCGGS++I+PCSRVGH+FRK HPY FP GN  TY+
Sbjct:   65 SKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPSVSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDPEDCLLLTRIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQRVKEDHTRVVSPIIDVISLDNFAYLAASADLRG--------------------------------GFDWSLHFKWEQIPL---EQKMTRTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGHVFRKRHPYNFPEGNALTYI 364

The following BLAST results are available for this feature:

BLAST of TCONS_00034881 vs. Swiss-Prot (Human)

BLAST of TCONS_00034881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLT16	9.040e-123	51.94	Polypeptide N-acetylgalactosaminyltransferase 16 O...	[more]

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TCONS_00034881 (transcript) - C. hemisphaerica