TCONS_00034880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034880
Unique NameTCONS_00034880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034880 ID=TCONS_00034880|Name=TCONS_00034880|organism=Clytia hemisphaerica|type=transcript|length=588bp
GGTTAATTCGTTCACGTTTGAAAGGTGTGAGCGTCGCCAAGTCATCCATC
TTAACATTCCTTGATAGCCACTGTGAAGTGAACGTCGGTTGGATTGAACC
ATTGCTAGCACAAGTTGAACAGGATCCACTTGCGATAGCTTCACCGGTGA
TTGACATCATCAAAACGGATACGTTGGAATATAAAGCCTCTTCAAATTAC
TTGAAAGGAgTATGAATTTCTGCATTCACCTTTCAACTAATGATTTAACA
TCAACTCACTGCTCAAAAAACACTTACAACTAATTCGCAATCCTAATCGA
TACAAGGATTTGACTGGAACATGCATTTTATTTGGGAGCCattatttgaa
aaagaaatgaaagaacAAAAAGCTGATCCAACTCACCCAATCAGAAACAA
TGGTTCAATCAACTTGGACAATACGATTCTTTGCTAGAAATATGGGGTGC
GGAAAACTTCGaaatttcattcaaaaccTGGATGTGTGGTGGAAGTATGA
AAATCATTCCTTGCTCACGAGTTGGTCATATCTTTCGTAAATCTCACCCT
TATGAGTTTCCTCTTGGCAATGGACACACGTACCTTAT
Run BLAST on NCBI

transcript from alignment at sc0001229:32431..34467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034880 ID=TCONS_00034880|Name=TCONS_00034880|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at sc0001229:32431..34467- (Clytia hemisphaerica)
GGTTAATTCGTTCACGTTTGAAAGGTGTGAGCGTCGCCAAGTCATCCATC
TTAACATTCCTTGATAGCCACTGTGAAGTGAACGTCGGTTGGATTGAACC
ATTGCTAGCACAAGTTGAACAGGTTCAAAGATTATCGCCGTAAACCCCAA
ATCTTGTCAATATGTAACTTTCGATTTCTATCGAATACAGTTTGTAGCAA
AGCAAAAAAAAAAGACATTATGAAAAAAAATTAAAATATTGTGTTACCCT
GGGATGTAGAATCCAATCTATTTTTGTTAATTCTACATATTTCTAAAATT
ATAGGATCCACTTGCGATAGCTTCACCGGTGATTGACATCATCAAAACGG
ATACGTTGGAATATAAAGCCTCTTCAAATTACTTGAAAGGAGGTATTTTT
TTGTAAACACTTCGGAGAAATCTTTCCTTGAGATGAACATCTCGAGCATG
ATAGGGTGAATGTCTTCATTGCTTCATAATACAGTAACCCTAACCTCTAA
TTAGCCATCTTAGAAGTTGACTACATAGTAAAAAACATAGAAATGCAGTA
ATAAATTTACTGATTAATTTACTGACTCTCTGCTAATCAAGATTTTCAAG
ATTCGCTTTTTCTTACTGTTTATTTACTGTTCTTTTTTCAGTATGAATTT
CTGCATTCACCTTTCAACTAATGATTTAACATCAACTCACTGCTCAAAAA
ACACTTACAACTAATTCGCAATCCTAATCGATACAAGGTGAGTTTTGTAA
GCCAAAGTCAATGTTGGCCATCACTTTAAAACATGTTTTTAAAACTTGGT
TTAAGAAGTTAGTTTGGTTGCAGTTTTTTTTTTAATTATGACTCATTCGG
CATTACATCCAGTGTTAGTTATGTTTTATTAAATACTACATAGTAATGGA
AATTAATTGTATAATCAAAAGTTTGCTTTAGGTTTGCTGTTTTGAGCAAT
CTTTGTCTATCTCTGTCAGTTTTTTGTTTTTACTGACTAGCTACGAGATC
CTTATTCTACGTGTCTTGCTGTTTGGAAACCATTTCACTGGTTTCATTCA
TCCCTTGATTTTTTCCCAAAAAAAATCAATATATTATAAAACGTTTTTGA
TGGATTAAACACAACGATTTCTCCATTTGCACAACTGCCACTTGCACAAA
AAGATTCTAAATATGTACTATAATGATTTCATAGGATTTGACTGGAACAT
GCATTTTATTTGGGAGCCATTATTTGAAAAAGAAATGAAAGAACAAAAAG
CTGATCCAACTCACCCAATCAGGTAACAACTTGGGAAAAGAAATTCACTG
CTTTAGGGATATGCGAAGCCTTCAAATGTTCTCAACAAGTTCTTAATATA
TTGGTAATCGAAGCCTTTTTGTTCTTTTACACTTTGTTCTAAAAAAAACA
ATGTTTAGCTGGCGTTGTTGTCTTAAAGATATATAGTTATGTTAATATTT
TGTTAAGATGAAATAAACTTGTCCCAGTCTTGGGAATAATACATGTATGA
ACCCTTAAACGTTTAAAGGTAGCTGATTTCTAAAACCTTTTTGAACTATC
TTTTGTGAAGTTTTTAAAATCTTTCCCATAGTACACCAGTAATTGCAGGT
GGTCTATTTGCTGTTCAGAAACAATGGTTCAATCAACTTGGACAATACGA
TTCTTTGCTAGAAATATGGGGTGCGGAAAACTTCGGTAAGATAATCTTTC
ATAACATTTTTTGACTTGGACTTCAATCAAGAATTACTTCAGGACATAAT
CTGTGGCTCTTTGGATTCAGAAATTCTCAAAACCTTAAAGTCAACTGACG
CATGACCTCGCTAAAGTCAGAAATAAAGAAACTTAAAAATTGATGAATTT
AGAAAGTATTTCTTTATTTGCTTCCCCTTATATAACTAAGATAACTTTTC
TTTTTCTCAGAAATTTCATTCAAAACCTGGATGTGTGGTGGAAGTATGAA
AATCATTCCTTGCTCACGAGTTGGTCATATCTTTCGTAAATCTCACCCTT
ATGAGTTTCCTCTTGGCAATGGACACACGTACCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020293XLOC_020293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034880-exon-sc0001229-1575043694:34346..34467TCONS_00034880-exon-sc0001229-1575043694:34346..34467Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1575043694:34076..34163TCONS_00034880-exon-sc0001229-1575043694:34076..34163Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1575043694:33731..33826TCONS_00034880-exon-sc0001229-1575043694:33731..33826Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1575043694:33196..33283TCONS_00034880-exon-sc0001229-1575043694:33196..33283Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1575043694:32783..32849TCONS_00034880-exon-sc0001229-1575043694:32783..32849Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1575043694:32431..32557TCONS_00034880-exon-sc0001229-1575043694:32431..32557Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:34346..34467TCONS_00034880-exon-sc0001229-1510915933:34346..34467Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:34076..34163TCONS_00034880-exon-sc0001229-1510915933:34076..34163Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:33731..33826TCONS_00034880-exon-sc0001229-1510915933:33731..33826Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:33196..33283TCONS_00034880-exon-sc0001229-1510915933:33196..33283Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:32783..32849TCONS_00034880-exon-sc0001229-1510915933:32783..32849Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1510915933:32431..32557TCONS_00034880-exon-sc0001229-1510915933:32431..32557Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:34346..34467TCONS_00034880-exon-sc0001229-1491911889:34346..34467Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:34076..34163TCONS_00034880-exon-sc0001229-1491911889:34076..34163Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:33731..33826TCONS_00034880-exon-sc0001229-1491911889:33731..33826Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:33196..33283TCONS_00034880-exon-sc0001229-1491911889:33196..33283Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:32783..32849TCONS_00034880-exon-sc0001229-1491911889:32783..32849Clytia hemisphaericaexon
TCONS_00034880-exon-sc0001229-1491911889:32431..32557TCONS_00034880-exon-sc0001229-1491911889:32431..32557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001229supercontigsc0001229:32431..34467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.483547	0.500287	0	0	0.955209	0.632939	2.04947	3.36291	1.95668	0	0	0.324961	1.29963	1.39338	1.32492	2.19568	0	4.41411	0	1.7911	1.48269	1.47051	0	2.39333e-07	1.70356	3.89934	1.36747	0.726882	2.56415	2.40385
Blast
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BLAST of TCONS_00034880 vs. Swiss-Prot (Human)
Match: GLT16 (Polypeptide N-acetylgalactosaminyltransferase 16 OS=Homo sapiens GN=GALNT16 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.705e-48
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 2 
Query:  392 QKQWFNQLGQYDSLLEIWGAENFEISFKTWMCGGSMKIIPCSRVGHIFRKSHPYEFPLGNGHTYL 586
             K WFN LG+YD+ ++IWG ENFE+SF+ WMCGGS++I+PCSRVGH+FRK HPY FP GN  TY+
Sbjct:  300 DKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGHVFRKRHPYNFPEGNALTYI 364

HSP 2 Score: 99.7525 bits (247), Expect = 1.705e-48
Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 3 
Query:    3 LIRSRLKGVSVAKSSILTFLDSHCEVNVGWIEPLLAQVEQDPLAIASPVIDIIKTDTLEYKASSNYLKGV*ISAFTFQLMI*HQLTAQKTLTTNSQS*SIQGFDWNMHFIWE--PLFEKEMKEQKADPTHPIR 395
            LIRSR++G  VA +++LTFLDSHCEVN  W+ P+L +V++D   + SP+ID+I  D   Y A+S  L+G                                GFDW++HF WE  PL   E K  + DPT PIR
Sbjct:  191 LIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQRVKEDHTRVVSPIIDVISLDNFAYLAASADLRG--------------------------------GFDWSLHFKWEQIPL---EQKMTRTDPTRPIR 288
The following BLAST results are available for this feature:
BLAST of TCONS_00034880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLT161.705e-4866.15Polypeptide N-acetylgalactosaminyltransferase 16 O... [more]
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