|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034876 ID=TCONS_00034876|Name=TCONS_00034876|organism=Clytia hemisphaerica|type=transcript|length=1231bp
AGTATGGATGGACCGTTATAAAAGAATATTCTATCGAGCACGTGGTGGAA
ATATGAACGAACCATTACCGAGaatcaaagAACGACGTTTAATCAGAGAA
AGACTGAAATGTCGTCCTTTCGATTGGTATCTGATGGAAGTCTATCCAGA
GTTGAGCAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGA
CAAATGTTTATATGCttcaaagaagagaaaaagaatATCTCTCAAAGATT
GTGACAACTCCGATTTTAATCAGCATTGGAAGTTTATGATTCGTGAACGG
TTACGTCATCAAGCAACAAATCTATGCATCGAAAGGAAATCGGATGGCTC
GTTACTCTTAGCAAGATGTGAAAATTTCAGTCCACAACAGAAATGGTCTT
TTACTACCAAATTTCTCTTCTAAATTATTGGTGATAGAATGTTCACTTTA
TCTACCATTATTGAGAGTAAAAAGTAAAACGGCTGGTGAAAACGTAGAAG
ATGTCGATTCTCCAACTGTTATGGTAGCAAATTTATGGTCAGAAAATAAC
GTGGGATAAAAAGAAAGTAGATAGGCAAATCATGTGTTGCTGATGAAAGT
ACGTTTATTATACACAAACGAAGACATGAATGAATGAAGGAGTTTATAGA
TGAAATTATTGCCTTTTGGTTTCATCTGACTGATTACTGTACATTAAGTT
AACAACGTATATGGATTGCTGGCAAGGAAACATTGAAACCGAATGGTaga
ttcacaaaattgtgtTTAGGGATATTGTGACCACAATCAAAGGATAATTT
GATGAATTATATGTTAGGATTATCTTGATCAGATTGCACAAGTATACACG
AAACCTTCTTGAAAGTGAAGAGTACTTTTGAACCGATAGTAAAGTCGTTC
TCGGCTATCTCAACAACactgaaaaaagattaaaaatttttgtGTTCAAC
CGTATTCAAAAAGATTAAAGATGTCGCCAATGTGGAACAATGGAATCACG
TGGAATCTAAAACGAACTCAGCAGCAGATGTTGGTACTCGTTGTTGTCCT
CGGAAAAACCTCAGAAATCTTGCAGGAACATCAAagataaaattgttctt
aatgtAGTTCCTTCTTTTTACTTAGAGCCATGGTTACTTTAAAAACTATA
TAGTCTTTcatttcttataagaatatctaGGGACGCCTTGCCTTTTcttg
tcttattttttctttaacAAACGCAATACTG Run BLAST on NCBI transcript from alignment at sc0001229:22982..31458- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034876 ID=TCONS_00034876|Name=TCONS_00034876|organism=Clytia hemisphaerica|type=transcript|length=8477bp|location=Sequence derived from alignment at sc0001229:22982..31458- (Clytia hemisphaerica)
AGTATGGATGGACCGTTATAAAAGAATATTCTATCGAGCACGTGGTGGAA
ATATGAACGAACCATTACCGAGGTAAAAATTATACAATTAGGAATTTTCA
GCAGCATTTTTTTCAGTAGACAGCATTAGCCTCGATTTTTGCTGTCCCTA
TCCTGATTCTTCATTACTCTTTTCCTAGACGGTATGTGGTACGTTCATTA
TAATGAGTTTCTTAGGGTTTATGAAATTTCGGTTTTCTTTTTTAGAATCA
AAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTTTCGATTGG
TATCTGATGGAAGTCTATCCAGAGTTGAGGTAACTTTTAGGTCTTCGTTT
TTATTAATTGATGGATATTTTTGTTTTGACTGAAAATTGTCTTTCGGTGC
ACCAAACGAAAAATAAATCTGCTGCTTGGATTGGTGGCTTTAGTTCCCCC
TTCTGTCAACACGCTACCGTCTCGAAATTATTTAGAACCAAGTATCATTT
ATTTCAGAGTTCCGAATGTTGACGAGTTGGCTTATGGGGAGATCAAGCAA
ATTTATAAGGGACAATCGTATTGCTTATCTGAGTCCAAAACTTCAAAGGT
TTTGGCAGTGAAATGTATTCCCAATGTTAAGAAAATGGTAAGACTTTTCA
TTGAAATTATTTTCTCCTGCTGACATGACAGATTGCGGGAATCGGGCGAT
CGAAGGCTTTTGAACTAAGCAATGAGACATCTGGTGGGATTTAAGGCCTT
TTTTATCTATTAATTTAGGTACAGACTATTTTTATCTTTAATTTTCAATT
CATACGTTATTAACTCTCATACTAGAATAATGCATAATCAAGTTGATGAT
CTTTAGTTATAAACAGTATTTTCGTAGCGTAAGATGCGTCTTTTCTTGCA
CTATATTACTTTTCGCATTTTTCAACTGTTTTTCTATCGTTTGTTCAAAT
TGTCAATTTCTTTTTCCAAATGGATAGCCATTTACCATGGCTTTTTGTGT
TGGCCGTGTTTCACACAGTTTCCAAGATTAGAGACACGACCTTTTATGAA
CGTAAGGTGACGTATCAGCAAAGTTGCGAGGCCAACTGATATCTTTAATA
TTGCCTAAGCATTCAATGTCCGCATTTTCATTTCATTCAATATCAAATTT
AATTGTCACTGTATCATTATACTGAATATTCGATAATCTTCCTTGATTGA
TGAAGAAAATGGCTCCAACACTACCACTCATGATGCATTCTCCATGGGGT
GTTTCGTAAAGCTTGAGAAACATTTGATCATAGGAACTTTTAGTAATATC
CCAGTCCACCAATATACCATTTACCAAAAGTCTCATTTTGATTGTTTTGA
ATTGCATTGGCCATTGGTTCGTGTCATCAAAAGGCCCCTTACTTATCCAC
AATGACACAGTAACGTGAGTCTTCTTCTCGGAAATTTGACGGCTGAAATT
CAAGCGCAGCAATGCTTTGTATGTACCAAAAACAAAGAAAGACGGTGATT
CTGTAACGGTGTTGAATTCTTTGAATTCCTGGAATTTCTGCTGTAGGTTG
GGTATAGTCCATACGAAAGTGCTTTGAAGGATTTTCTCACAACTTCTCAG
CTTTCTTTCTGCACAGTGATTTTCACTTTCACTCTTTTTTTCTCGTTGCT
GCATTTCGCTCTCATCATGTGATCTTTCTGTATCAACATTTTCAATTACA
GGTTTCGATCCAGTCTTGATCCTGTTGATCTTCTTTTTGCTTTTGAACAC
ATCAAATCCCATCCTATCTTTTATGGGCGACTGTATAGCTTTCTTTTTCC
CTATAATAAAAGGTTTTAAAATCTCTAACTTATGTTCACACATCTTTAGT
GGCTAATTCACTGGCCTACCATAATATCTTTATAATGCGCGTTATGAAAT
TTGCCTTACTTCATATCCCCCTCTCTAAATTCAAATAAATTGTCTAGAAC
CGAAAGACTGTCTTTTTCAAAATCTTTGCCCAACTTAGATTGATGTTTAT
TCGTTTTGGAACGACTAATTATGGATTCTATTTTTTTAAGGACGACTTTT
ATCAAAGATAAACAAGAAAGCTCTTACCTATTCTCTTTGTAAATTTGAAC
GGTCTTTTTTGTCTTTTCGTTTATTTCTTGATTTCTCTAACATTCATAAC
TCCTTTACTGAACTGAATTGATATATATGGTAGGAGTAGTCCTATACTCA
TCAAGTTAATGTAGTTTTCTTTTCCCTAATATGCAAAAACTACCCTAACC
ATATAAAAAATCAATAAAAATAGTAACTACCGGTTTGTTTATTTACTTAG
GAATAAATAGTTTGCTAATGTGTTATTTTCAAAATACCCACGATAAAGTA
ACAAAAATAAAACTCAGGGATAGTTCGTAGTGTATCACTTCAAGCCAGTC
CATAGTAACGGCAATTTGTAACACATTGTTGCGAAATCACCCTCACCATT
CACTGTTTGATTTCATTTTCCCCAATTCAAATTTTTGTAAATAAGGTATT
TTAAATTTTTTTAAAGAAATCATCTCGTTGCAGTGGCGTTCTGGGAAAAT
NGCATGATAGATTGTGGGAATCGAGGAACCTAAAAGCTTGTGAACTAGGC
AAAGAGATATATGCTGGAATTTGAGGCCTTTTTAATCTATTAATTTAGTT
ACAGACTATTGTTAACTTTAAGTTTCAATTCATACGTTATTAACTCTCAT
AGAATATTGTATTATGTATGACGATCTTCTGTTATAAACAGTATTTTCGT
AGCGTAAGATGCGTCTTTTCTTGCACTATTATTTTTCGCATTTTTTCAAC
TGTTTTTCTATCGTTTGTACAAATAGTCAATTTCATTTTCCAAATGGATA
GCTTTTTTTTCAACTTCCATTTACCATGGCTTTTTGTGTTGGCCGTGTTT
CCAGTAGTTTCCAAGATTAGAGACACGACCTTTTATGGACGTAAGATGAC
GTATCAGCAATGTTGCGAGGCCAACTGATATCTTTAATATTGCCTAAGCA
TTCAATGTCCGCATTTTCATTTCATTCGATATCAAATTTAATCGTCACTG
TATCATTATACTGAATATTCGATAATCTTCCTTGATTGATGAAGAAAATG
GCTCCAACACTACCACTTATGATGCATTCTCCATGGGGTTTTTCGTAAAG
CTTGAGAAACATTTGATCATAGGAACTTTTAATAATATCCCAGTCCACCA
ATATACCATTTAAACAAAAGTCTCATTTTGATTGTTTTGAATTGCATTGG
CCATTGGGTCGTGTCATCAAAAGGTCCCTTACTTATCCACAATGACACAG
TAACGTGAGTCTTCTTCTCGGAATTTTGACGGCTGAAATTCAAGTGCAGC
AATGCTTTGTATGTACCAAAAACAAAGAAAGACGGTGATTCTGTAACGGT
GTTGAATTCTTTGAATTCCTGAAATTTCTGCTGTAGGTTGGGTATAGTCC
ATACGAAAGTGCTTTGAAGGATTTTCTCACAACTTCTCAGCTCTCTTTCT
GCACAGTGATTTTCACTTTCACTCTTTCTTTGTCGTTGCTGCATTTCGCT
CTCATCATGTAATCTTTCTGTATCAACAATTTCAATTACAGGTTTCGATC
CAGTCTTGATCCTGTTGATCTTCTTTTTGCTTTTGAACACATAAAATCCC
ATCCTATGGTTGACTGTAGTATAGCTTTCTTCTTTCCTATAATGAAAGAT
TTTTAAGCCTCTAACTTACGTTCACACATCTTTTAGTGGCTAATACGCTG
GCCTACCATAATGTCTTTATAATTCGTTATGAAATTTGCCTTCCTTCATA
GACCTCCCTCTAAATTCAAATGAATTGTTTAGAACCGAAAGATTGTCTTT
TTCAAAATCTTTACTCAACCTAGATTGATGTTTATTCGTTTTGGAACGAC
TAATTATGGATTCTATTTTTTTAGGACGACTTTTATCAAAGATAAACAAG
AAAGCTCTTACCTATTCTCTTTGTAAATTTGAAAGGTCTTTTTTGTCTTT
TCGTTTATTTCTTGATTTCTCTAACATTCATAACTCCTTTACTGAACTGA
ATTGATATATATGGTAGGAGTAGTCCTATACTCATCAAGTTAATGTAGTT
TTCTTTTCCCTAATATGCAAAAAATACCCTAACCATATAAAAAATCAATA
AAAATAGTAACTACCGATTTGTTTATTTACTTAGGAATAAATAGTTTGCT
AATGTGTTATTTTCAAAATACCCACGATAAAGTAACAAAAATAAAACTCA
GGGACTTTGATAGTTCCCTAGTGTATCACTTCAAGCCAGTCCATAGTAAC
GACAATTTGTAACACATTGTTGCGAAATCACCCTCACCCTTCACTGTTTG
ATTTCATTTTTCCCAATTCAAATTTTTGTAAATAAGGTATTTTAAATTTT
TTTAAAGAAATCATCTCGTTGCAGTGGCGTTCTGGGAAGATTTTTCTGGA
GGGGCCAAAGTCAATTTTTTAGAATGGTGCCCCCAATCTTCCAAAGTGGT
GCCCCCACCCACCAGTTTTTAAACTTTTATTTGCCTAGGCATAATGAGGA
AGGAAATATTAAGTGGATAAGAGTAGAGTAGAAAATTTTTGAAAATTGAC
TGCCAAGATACCCTAAATTACTTAACAAAAATAGAAAAATTTGACACTTG
CTAGAGTGAAAAGAAACTTAAACAAATAATGCGAGCGAAGCGAACAGAAA
AATTTGATGTTTTTTTACTTCAATATTGTAATTAGATTTTCATTTGATAA
TGCTATAATGTACACACAAAAAACTTAGGTAGATTACAAAGAAGTTGCCA
ATTAACTTTATTGCAAGTGAATCAAAATCATTGCAAGTAATTTAAAATTA
TCTCAGTAAAATTGCTCCTGGGGCGCAACATAAAGTATGATTTTTAAGAT
TGGGGCGTTTCAATAATCTCTTTTGGCGCCCCTTGCTCTTCGGCGCCCCT
TCAAAAAAGGTCCGCTGGCCCCCACTGCCAGAATGCCACTGCTCCTGTAA
AAATTTGCGTGCTGGATAGTTCTATACCCTGGGAAAGTGTTTAGAGGGAC
AAATCAATTTTATTCCATAAACCCAAATTTTTAATTAATTTTGTCTCGAA
GCGCCTTTAAAAGGTTCCGTGTGATTGAAAATCTATATTGGACAGTTCAA
AAAACCAGTAGAACGATACATGAAACCATCGGAGAGGAGGGGCTTTTTGT
CTGGGTTACCATAGATCTGTTGTATTTTCAAGACCAACGATATTTTTGTA
TTTCACTTGCCAGCAATGGGTAATGTCAGTAACAGGAATGATTCAAAACG
AAAAAGACAAATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTC
AAAGATTGTGACAACTCCGATTTTAATCAGGTAAAGTTGTTTTTTTGAAA
AAATTTATCCTTTTGAGCGAAAGGTATATCCCTCTAAATTTAAATTTGAG
TCGCAAAAATGGACATGGCAAAACTTGATTTTTAAAAATGCTGAAAAGGC
TAGTTCTTGACTACCGGTATTGAATCTCACGTATTTCACCAATCAATTTT
CTTGTGTCTATTGTTATTGAATCGGGAGTAACCTCGTGACTAAAAAGTAA
TACACGCCTTCTTCAGACATTTGAAATTGGACGCTAATTCTTCCAGTTAA
GTCCTCACACTTTATTGACCCACGTTTATTTTGCACAAGAGAGTATTTTT
CACATTGCCATCGTGTGTCAGCCTTCAAAATTACAGCAAGGAATTATACT
GACTATATGATAATTTGATGGTGTTCTTGAGTGACTCTGATAACTACAGG
GCTTTGTTTACATTTTTTTAACATTCAGCATTGGAATTTTATGATTCGTG
AACGGTTACGTCATCAAGCAACAAATCTATGCATCGAAAGGAAATCGGAT
GGCTCGTTACTCATAGCAAGATGTGAAAATTTCAGTCCACAACAGACATG
GTCTTTTACTACCAAATTTCTCTTCTGAATTATTGGTGATAGAATGCTCA
CTTTATCTACCATTATTGAGAGTAGAAAGTAAAACTTCTGGTGAAAAAGT
AGAATATGTCGATTCTCCAACTGTTATGGTAGCAAATTTATGGTCAGAAA
ATAGTGTGAGATAAAAAGAAAGTAGATAGGCAAATCATGTGTTGCTGATG
AAAGTACGTTTATTATACACGAACGAAGACCTTTATGAATGAAGGAGTTT
TTAGATGAAATTATTNATAATGAGGAAGGAAATATTAAGTGGATAAGAGT
AGAGTAGAAAATTTTTGAAAATTGACTGCCAAGATACCCTAAATTACTAA
ACAAAAATTTGACACTTGCTAGAGTGAAAAGAAACTTAAAGAAACAATGT
GTAATGCGAGCGAAGCGAACAGAAAAATTTGATGTTTTTTTATTTCAATA
TTGTAATTAGATTTTCATTTAATAATGCTATATTGTACACACAAAAAAAC
TTGTAAATTAGGTAGATTACAAAGAAGTTACCAATTAACTTTATTGCAAG
TGAAACAAAAACATTGCAAGTAATTTAGAATGATCTCAGTAAAATTGCTC
CTGGGGCGCAATTTTAGGCGCATGAAGTATGATTTTTAAGATTTGGGCGT
TTCAATAATCTCTTTTGGCGCCCCTTGCTCTTCGGCGCCCCTTCAAAAAA
GGTCCGCTGGCCCCACTGCCAGAACGCCACTGCTCCTGTAAAAATTTGCG
TGCTGTATAGTTCTATACCCTGGGAAAGTGTTTAGAGGGAAAAATCAATT
TTATTCCATAAACCCAAATTTTTAATTAATTTTGTCTCGAAGCGCCTTTA
AAAGTTTCCGTGTGATTGAAAATCTATATCGGACAGGTCAAAAAACCAGT
AGAACGATACATGAAACCATCGGAGAGGAGGGGCTTTTTGTCTGGGTTAC
CATAGATCTGTTGTATTTTCAAGACCAACGATATTTTTGTATTTCACTTG
CCAGCAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGACA
AATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGATTGT
GACAACTCCGATTTTAATCAGGTAAAGTTGTTTTTTTGAAAAAATTTATC
CTTTTGAGCGAAAGGTATATCCCTCTAAATTTAAATTTGAGTCGCAAAAA
TGGACATGGCAAAACTTGATTTTTAAAAATGCTGAAAAGGCTAGTTCTTG
ACTACCGGTATTGAATCTCACGTATTTCACCAATCAATTTTCTTGTGTCT
ATTGTTATTGAATCGGGAGTAACCTCGTGACTAAAAAGTAATACACGCCT
TCTTCAGACATTTGAAATTGGACGCTAATTCTTCCAGTTAAGTCCTCACA
CTTTATTGACCCACGTTTATTTTGCACAAGAGAGTATTTTTCACATTGCC
ATCGTGTGTCAGCCTTCAAAATTACAGCAAGGAATTATACTGACTATATG
ATAATTTGATGATGTTCTTGAGTGACTCTGATAACTACAGGGCTTTGTTT
ACATTTTTTTAACATTCAGCATTGGAAGTTTATGATTCGTGAACGGTTAC
GTCATCAAGCAACAAATCTATGCATCGAAAGGAAATCGGATGGCTCGTTA
CTCTTAGCAAGATGTGAAAATTTCAGTCCACAACAGAAATGGTCTTTTAC
TACCAAATTTCTCTTCTAAATTATTGGTGATAGAATGTTCACTTTATCTA
CCATTATTGAGAGTAAAAAGTAAAACGGCTGGTGAAAACGTAGAAGATGT
CGATTCTCCAACTGTTATGGTAGCAAATTTATGGTCAGAAAATAACGTGG
GATAAAAAGAAAGTAGATAGGCAAATCATGTGTTGCTGATGAAAGTACGT
TTATTATACACAAACGAAGACATGAATGAATGAAGGAGTTTATAGATGAA
ATTATTGCCTTTTGGTTTCATCTGACTGATTACTGTACATTAAGTTAACA
ACGTATATGGATTGCTGGCAAGGAAACATTGAAACCGAATGGTAGATTCA
CAAAATTGTGTTTAGGGATATTGTGACCACAATCAAAGGATAATTTGATG
AATTATATGTTAGGATTATCTTGATCAGATTGCACAAGTATACACGAAAC
CTTCTTGAAAGTGAAGAGTACTTTTGAACCGATAGTAAAGTCGTTCTCGG
CTATCTCAACAACACTGAAAAAAGATTAAAAATTTTTGTGTTCAACCGTA
TTCAAAAAGATTAAAGATGTCGCCAATGTGGAACAATGGAATCACGTGGA
ATCTAAAACGAACTCAGCAGCAGATGTTGGTACTCGTTGTTGTCCTCGGA
AAAACCTCAGAAATCTTGCAGGAACATCAAAGATAAAATTGTTCTTAATG
TAGTTCCTTCTTTTTACTTAGAGCCATGGTTACTTTAAAAACTATATAGT
CTTTCATTTCTTATAAGAATATCTAGGGACGCCTTGCCTTTTCTTGTCTT
ATTTTTTCTTTAACAAACGCAATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034876-exon-sc0001229-1575043694:31387..31458 | TCONS_00034876-exon-sc0001229-1575043694:31387..31458 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1575043694:31130..31213 | TCONS_00034876-exon-sc0001229-1575043694:31130..31213 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1575043694:26079..26195 | TCONS_00034876-exon-sc0001229-1575043694:26079..26195 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1575043694:22982..23939 | TCONS_00034876-exon-sc0001229-1575043694:22982..23939 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1510915933:31387..31458 | TCONS_00034876-exon-sc0001229-1510915933:31387..31458 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1510915933:31130..31213 | TCONS_00034876-exon-sc0001229-1510915933:31130..31213 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1510915933:26079..26195 | TCONS_00034876-exon-sc0001229-1510915933:26079..26195 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1510915933:22982..23939 | TCONS_00034876-exon-sc0001229-1510915933:22982..23939 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1491911889:31387..31458 | TCONS_00034876-exon-sc0001229-1491911889:31387..31458 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1491911889:31130..31213 | TCONS_00034876-exon-sc0001229-1491911889:31130..31213 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1491911889:26079..26195 | TCONS_00034876-exon-sc0001229-1491911889:26079..26195 | Clytia hemisphaerica | exon |
| TCONS_00034876-exon-sc0001229-1491911889:22982..23939 | TCONS_00034876-exon-sc0001229-1491911889:22982..23939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:22982..31458 - |
Blast
The following BLAST results are available for this feature:
|
