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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034870 ID=TCONS_00034870|Name=TCONS_00034870|organism=Clytia hemisphaerica|type=transcript|length=2183bp
GCTTTCCAATAACTTCTTCACCTTTCTCATTAGGTATTATCTGGCAGTCC
CAAACTGCACAAGAATTAGGTTCAGTTGATGCCATGTAAATTCCACCAGT
AGGATAAAAGAGTTCACCATAAAGTCCAGGTCGTCCCCAGGAAACAACCC
ATGGAAAATCCTCAGAGGACCCAGAGCCCTTTTCAATGTACAACTCTCGA
CACTGTTGATCACTTAAGCCATTTTTAACATGAATGATTCCAGGAGATTC
AGTATGTAGTCCGGGTCTCCGATGAGATTTTCCTTCATAAACACAGCTTT
CATCAATGGTTAGATAACCAACTTTACCCAACTCAACTGACATTCCCTGA
GAAAAATTAAAGATTGGACATAACATATCCACAAAATATTCCAACAAATA
ATCTGGTAACTTAGTTTCCTCAAAGCTTTTTGACATTATGAAAGGCATCA
TATTAATGTTAATATCATTATCTGTTGCAGGGAAGTGTATTTGTACAAAG
GGGCATTCCATATATCCACAGACGGTCATATCAGGTTCAATTTGGTCTGC
TCGATCTTCAACAAGGTCTATCCATGATGGTTCAAATTTAATATGCTGTT
TTAGTGTAGCTATCAAATATCGCCAAATCATTTGTAGAACATGGGGAATA
CCATTGAGTTTTGAAAATGGACTGTTTTCATCGTTAACTCCCTGTAAAAT
GGTTCTGGCAATAGGATTCAATGGTGGATTAAGCTGGAGGTTTTCTAATC
TTGGGTAATCCATAGTGAGTGTCAAGTTGGTTTCATgtcaatgttttatt
tttcttattttagccCCTTTTTCTACagtatttttctaaaatgtaaaaaa
ataaaataataacNCTCACTAACTTAGTTTGAAGAAATTATAAATCATCT
AATTAAAACATATCAATTGTTGTTGACAATAATTATCAACTTATTTGATA
TTAATAAAATATCATCAAAATATAACAATAAGATTGACTATAAATTATCC
AAATGCAGACATCTTTCCCCTTTAGTCTACTATTGTCAAAACATCACCAT
CAAATTTGGATCCTCTGACAATTTTAGCATCACCAGGTGGTATACCCATA
GGGTTTTCAGTCGAATGATCTTTATACCAAACAGAAACATCCTTGGTAAC
AACCCTTATAAATTGTCTATAAGTACCTTTCTTCAAAGGTAAAGATTCGT
GTGGTGTACGGTCAGTCACCCAGTAAAGCATGTTTGCTTTCAACTTGGTT
GATTCTGGTAAAAGACTACGCAAATGCTCAATATCTCCATGTTTGCCAAT
AATTTCTTCACCGTTTTCACCAGAAACGATTTGACAATCCCAAACTTCAC
ATGAATTACTCACGTTTGATGCCATATAGATACCACCATCCAATTCCAAT
TCACTGTCATAACCACCTCGTCCCCACTCAACTAACATAGGGTAAACCAC
AGCACTACCACCACCCTTTTCATCAAAACATTTATCACCCTTTTCAGCTT
TCCCTTCATTCTTGACGTAAATTATACCAGGGGATTCAGTGTGAAGCCCT
GGTCTCCGCTGAGACTGACCTTCATCTACTAAACTCTCATGAATGGTTAG
ATATCCAATCTCCCCTTCCTGCCCTCTATAATCAATATTAGATAAGATTT
TGTCATGGTAATCTTCCAGATAGTCGGGAAGGCATGTGCTGTCAAAATCT
TCACTCATCAAAAATGGCAtcatattaatattaatatctTTTGGCTCTGG
AAACTCGATATCCTCAATCTCAATAAGACCATTATAAATTGCACCACTAA
CTAAAGGTGTATCTCGGCCTTTAAAAAACCACTCCTGGCCTACTTTAATG
TGCTTTTTccacttttttaatttcatatcCCATAGCACATGTCGCCAAAT
CATTTGCAAAACATGAGGTATTCCATTTAACTTAGAGAATGGGCTGCCAT
CATCTTTTATTCCTTGCAAAATGGTTTTGGCAATTGGGTGAATTGTTGAT
TGATCGTCAAGTGAGAGATTTTCCATCATAATCATAGATGTTATCAATTc
caaatttcttgattttcattaACCATATAAATATTTAACGACAATTTCAA
ATAAACATGGAACAACCAcgaaaacaaaacatcaaaagtctatattttat
tttattttgatgttgataTTGTTGCCCTAAAAC Run BLAST on NCBI transcript from alignment at sc0001229:4459..6641+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034870 ID=TCONS_00034870|Name=TCONS_00034870|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at sc0001229:4459..6641+ (Clytia hemisphaerica)
GCTTTCCAATAACTTCTTCACCTTTCTCATTAGGTATTATCTGGCAGTCC
CAAACTGCACAAGAATTAGGTTCAGTTGATGCCATGTAAATTCCACCAGT
AGGATAAAAGAGTTCACCATAAAGTCCAGGTCGTCCCCAGGAAACAACCC
ATGGAAAATCCTCAGAGGACCCAGAGCCCTTTTCAATGTACAACTCTCGA
CACTGTTGATCACTTAAGCCATTTTTAACATGAATGATTCCAGGAGATTC
AGTATGTAGTCCGGGTCTCCGATGAGATTTTCCTTCATAAACACAGCTTT
CATCAATGGTTAGATAACCAACTTTACCCAACTCAACTGACATTCCCTGA
GAAAAATTAAAGATTGGACATAACATATCCACAAAATATTCCAACAAATA
ATCTGGTAACTTAGTTTCCTCAAAGCTTTTTGACATTATGAAAGGCATCA
TATTAATGTTAATATCATTATCTGTTGCAGGGAAGTGTATTTGTACAAAG
GGGCATTCCATATATCCACAGACGGTCATATCAGGTTCAATTTGGTCTGC
TCGATCTTCAACAAGGTCTATCCATGATGGTTCAAATTTAATATGCTGTT
TTAGTGTAGCTATCAAATATCGCCAAATCATTTGTAGAACATGGGGAATA
CCATTGAGTTTTGAAAATGGACTGTTTTCATCGTTAACTCCCTGTAAAAT
GGTTCTGGCAATAGGATTCAATGGTGGATTAAGCTGGAGGTTTTCTAATC
TTGGGTAATCCATAGTGAGTGTCAAGTTGGTTTCATgtcaatgttttatt
tttcttattttagccCCTTTTTCTACagtatttttctaaaatgtaaaaaa
ataaaataataacNCTCACTAACTTAGTTTGAAGAAATTATAAATCATCT
AATTAAAACATATCAATTGTTGTTGACAATAATTATCAACTTATTTGATA
TTAATAAAATATCATCAAAATATAACAATAAGATTGACTATAAATTATCC
AAATGCAGACATCTTTCCCCTTTAGTCTACTATTGTCAAAACATCACCAT
CAAATTTGGATCCTCTGACAATTTTAGCATCACCAGGTGGTATACCCATA
GGGTTTTCAGTCGAATGATCTTTATACCAAACAGAAACATCCTTGGTAAC
AACCCTTATAAATTGTCTATAAGTACCTTTCTTCAAAGGTAAAGATTCGT
GTGGTGTACGGTCAGTCACCCAGTAAAGCATGTTTGCTTTCAACTTGGTT
GATTCTGGTAAAAGACTACGCAAATGCTCAATATCTCCATGTTTGCCAAT
AATTTCTTCACCGTTTTCACCAGAAACGATTTGACAATCCCAAACTTCAC
ATGAATTACTCACGTTTGATGCCATATAGATACCACCATCCAATTCCAAT
TCACTGTCATAACCACCTCGTCCCCACTCAACTAACATAGGGTAAACCAC
AGCACTACCACCACCCTTTTCATCAAAACATTTATCACCCTTTTCAGCTT
TCCCTTCATTCTTGACGTAAATTATACCAGGGGATTCAGTGTGAAGCCCT
GGTCTCCGCTGAGACTGACCTTCATCTACTAAACTCTCATGAATGGTTAG
ATATCCAATCTCCCCTTCCTGCCCTCTATAATCAATATTAGATAAGATTT
TGTCATGGTAATCTTCCAGATAGTCGGGAAGGCATGTGCTGTCAAAATCT
TCACTCATCAAAAATGGCAtcatattaatattaatatctTTTGGCTCTGG
AAACTCGATATCCTCAATCTCAATAAGACCATTATAAATTGCACCACTAA
CTAAAGGTGTATCTCGGCCTTTAAAAAACCACTCCTGGCCTACTTTAATG
TGCTTTTTccacttttttaatttcatatcCCATAGCACATGTCGCCAAAT
CATTTGCAAAACATGAGGTATTCCATTTAACTTAGAGAATGGGCTGCCAT
CATCTTTTATTCCTTGCAAAATGGTTTTGGCAATTGGGTGAATTGTTGAT
TGATCGTCAAGTGAGAGATTTTCCATCATAATCATAGATGTTATCAATTc
caaatttcttgattttcattaACCATATAAATATTTAACGACAATTTCAA
ATAAACATGGAACAACCAcgaaaacaaaacatcaaaagtctatattttat
tttattttgatgttgataTTGTTGCCCTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034870-exon-sc0001229-1491911889:4459..6641 | TCONS_00034870-exon-sc0001229-1491911889:4459..6641 | Clytia hemisphaerica | exon |
| TCONS_00034870-exon-sc0001229-1510915933:4459..6641 | TCONS_00034870-exon-sc0001229-1510915933:4459..6641 | Clytia hemisphaerica | exon |
| TCONS_00034870-exon-sc0001229-1575043694:4459..6641 | TCONS_00034870-exon-sc0001229-1575043694:4459..6641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:4459..6641 + |
Blast
The following BLAST results are available for this feature:
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