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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034868 ID=TCONS_00034868|Name=TCONS_00034868|organism=Clytia hemisphaerica|type=transcript|length=1964bp
GGCTCATATTATGGCAGGATTAAATTCTCCAACCGAAGACCCATTCCTAC
AGTCAGTCCTTGAAGGATGTTCAAGACTTACAGCAACCCCAAATGAAAAA
ATGGAACCATTAGAACCAGAAGTAATCAGAAAGCTAGTCGACAAATACAG
AGAAGACCACACAATTCCAAATCTTCGATTCTTAGTACTTGCGACGATAG
GTTTCACAGGATTCATGAGAGTAGAGAAAATTCTGGAATTGAAACTCGGA
GACGTACGCATCAAACCCGACAGGTTAGAAATTGTCGTAGAGAAAAGTCA
AAGAATGACCAACATCATGAAGGTAACAAAATTCCAATTGCTAGATTGAA
CTCGAAGTACTGCCCAGTTAATatctttgaagaatttttgcaaaaagccG
AACTTGATATTTCAAAGGACAAACAATGTTATTTAATcccaagaattttc
aaatgcaAAAAAGGCCAGAGTTTCCAAGACTTTAGGGTTCGGTTATTCTA
AAGCAAGagagattttcttgaaatttgtcACTCCTTTTAAAGAAGAAGGT
GTTCGGTACGGTTTGCACGGTTTGAGATCAGGCGGAGCCTCGGCCGCAGC
CAACAACGGAGTAAGCGACAGATTGATATCAAAACACGGACGTTGGAAAT
CCGAAAAAGCCAGAGACGGTTATATCAAAGATAGTATGGCCACTAGAATG
AGTATTTCTAAATCCTTAGGCTTGTGATTATTActtattttctttatcta
ccACCTACCATTCTTTTTTCCACTCGGAACCACAAGACAATGCCTTTCAA
CGAAACAAATGTGTCAGTTTATTGGGAGGGGTTTGATTGTGAGTAAGATT
AGGTAGGAAATTAAATTTCCGACGTTCGAAGATAGTTGGAAATTGTTTTC
CTTCCGTTTCTATGCGAACATGTTTTCTACGCATGCGTAAGCATGGAGTC
TGGGACTATTCAAANACTAATAAGTCAATTATAATAAACAGAAATTAAAT
TTCCGACGTTCGAAGATAGTTGGAAATTGTTTTCCTTCCGTTTCTATGCG
AACATGTTTTCTACGCATGCGTAAGCATGGAGTCTGGGACTATTCAAAAG
GGCTGACAAGCCGTGTGTAGATCACTCGGTCTTTCGACTCTGGTTAGCAT
ACTTAGCAAATATTTGCGACCATTTCAATTATAtccaattttttctttct
tcatgtTTACATCAATACGCGACAAAGGACAAAAAGCAACAAAAGAATGT
CATCAATACCATCGAACAAGCGTCAAGAccacaaaagaagaaattttata
tatatatattttattgtCAGTTATAAAACTTGTTATATTTATAATTGGAT
GGAACTTCGGTTTGGCGCAACAGTTTTCTCTTGCACGTTCTCTACGTTTG
GCTCCTCAGTGAACACCTTGTTTCGCTATTTAGGGCAAGAGTTTTTCACC
TGATGCATCAGGACTATCACAAAAGATCAGTCCTCATCCATAGgggtaaa
aattttttaattgtataaatattttttaagtcaattataagaaaattctc
tattAGGGAAGGAACAACTTACTATCCAACATCGTGTAACATTTCGGAAT
ATCGACAACGCGATTATCAGcccaaaaacttttcccggCGAGATATGCCA
AAACACAGATGCTTTGCCGACTACGTGCCAAGAAAAGAGACACACAAGAA
ATGATTGCACGGCCATCGACCAACTACTTACGCGACCAACCCATAATATA
AATGATAACTCAAACTAGTTATTAttaatttttatattatataattATAT
ATACTAGAAACATGTAACCACTGCTAACTGGAACCACAAGACAATGCCTT
CCAACGAAACAAATGTGTCAGTTTATTGGGAGGGGTTTGATTGTGAGTAA
GATTAGGTAGGAACACTATTAATAAgtatacatcaatgttcttagtcaaa
ttactcaaattttt Run BLAST on NCBI protein sequence of TCONS_00034868-protein >TCONS_00034868-protein ID=TCONS_00034868-protein|Name=TCONS_00034868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
AHIMAGLNSPTEDPFLQSVLEGCSRLTATPNEKMEPLEPEVIRKLVDKYR
EDHTIPNLRFLVLATIGFTGFMRVEKILELKLGDVRIKPDRLEIVVEKSQ
RMTNIMKVTKFQLLD Run BLAST on NCBI transcript from alignment at sc0001227:76747..78710 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034868 ID=TCONS_00034868|Name=TCONS_00034868|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at sc0001227:76747..78710 (Clytia hemisphaerica)
aaaaatttgagtaatttgactaagaacattgatgtatacTTATTAATAGT
GTTCCTACCTAATCTTACTCACAATCAAACCCCTCCCAATAAACTGACAC
ATTTGTTTCGTTGGAAGGCATTGTCTTGTGGTTCCAGTTAGCAGTGGTTA
CATGTTTCTAGTATATATaattatataatataaaaattaaTAATAACTAG
TTTGAGTTATCATTTATATTATGGGTTGGTCGCGTAAGTAGTTGGTCGAT
GGCCGTGCAATCATTTCTTGTGTGTCTCTTTTCTTGGCACGTAGTCGGCA
AAGCATCTGTGTTTTGGCATATCTCGccgggaaaagtttttgggCTGATA
ATCGCGTTGTCGATATTCCGAAATGTTACACGATGTTGGATAGTAAGTTG
TTCCTTCCCTaatagagaattttcttataattgacttaaaaaatatttat
acaattaaaaaatttttacccCTATGGATGAGGACTGATCTTTTGTGATA
GTCCTGATGCATCAGGTGAAAAACTCTTGCCCTAAATAGCGAAACAAGGT
GTTCACTGAGGAGCCAAACGTAGAGAACGTGCAAGAGAAAACTGTTGCGC
CAAACCGAAGTTCCATCCAATTATAAATATAACAAGTTTTATAACTGaca
ataaaatatatatatataaaatttcttcttttgtggTCTTGACGCTTGTT
CGATGGTATTGATGACATTCTTTTGTTGCTTTTTGTCCTTTGTCGCGTAT
TGATGTAAacatgaagaaagaaaaaattggaTATAATTGAAATGGTCGCA
AATATTTGCTAAGTATGCTAACCAGAGTCGAAAGACCGAGTGATCTACAC
ACGGCTTGTCAGCCCTTTTGAATAGTCCCAGACTCCATGCTTACGCATGC
GTAGAAAACATGTTCGCATAGAAACGGAAGGAAAACAATTTCCAACTATC
TTCGAACGTCGGAAATTTAATTTCTGTTTATTATAATTGACTTATTAGTN
TTTGAATAGTCCCAGACTCCATGCTTACGCATGCGTAGAAAACATGTTCG
CATAGAAACGGAAGGAAAACAATTTCCAACTATCTTCGAACGTCGGAAAT
TTAATTTCCTACCTAATCTTACTCACAATCAAACCCCTCCCAATAAACTG
ACACATTTGTTTCGTTGAAAGGCATTGTCTTGTGGTTCCGAGTGGAAAAA
AGAATGGTAGGTggtagataaagaaaataagTAATAATCACAAGCCTAAG
GATTTAGAAATACTCATTCTAGTGGCCATACTATCTTTGATATAACCGTC
TCTGGCTTTTTCGGATTTCCAACGTCCGTGTTTTGATATCAATCTGTCGC
TTACTCCGTTGTTGGCTGCGGCCGAGGCTCCGCCTGATCTCAAACCGTGC
AAACCGTACCGAACACCTTCTTCTTTAAAAGGAGTgacaaatttcaagaa
aatctctCTTGCTTTAGAATAACCGAACCCTAAAGTCTTGGAAACTCTGG
CCTTTTTtgcatttgaaaattcttgggATTAAATAACATTGTTTGTCCTT
TGAAATATCAAGTTCggctttttgcaaaaattcttcaaagatATTAACTG
GGCAGTACTTCGAGTTCAATCTAGCAATTGGAATTTTGTTACCTTCATGA
TGTTGGTCATTCTTTGACTTTTCTCTACGACAATTTCTAACCTGTCGGGT
TTGATGCGTACGTCTCCGAGTTTCAATTCCAGAATTTTCTCTACTCTCAT
GAATCCTGTGAAACCTATCGTCGCAAGTACTAAGAATCGAAGATTTGGAA
TTGTGTGGTCTTCTCTGTATTTGTCGACTAGCTTTCTGATTACTTCTGGT
TCTAATGGTTCCATTTTTTCATTTGGGGTTGCTGTAAGTCTTGAACATCC
TTCAAGGACTGACTGTAGGAATGGGTCTTCGGTTGGAGAATTTAATCCTG
CCATAATATGAGCC Coding sequence (CDS) from alignment at sc0001227:76747..78710 >TCONS_00034868 ID=TCONS_00034868|Name=TCONS_00034868|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0001227:76747..78710 (Clytia hemisphaerica)
TCAATCTAGCAATTGGAATTTTGTTACCTTCATGATGTTGGTCATTCTTT
GACTTTTCTCTACGACAATTTCTAACCTGTCGGGTTTGATGCGTACGTCT
CCGAGTTTCAATTCCAGAATTTTCTCTACTCTCATGAATCCTGTGAAACC
TATCGTCGCAAGTACTAAGAATCGAAGATTTGGAATTGTGTGGTCTTCTC
TGTATTTGTCGACTAGCTTTCTGATTACTTCTGGTTCTAATGGTTCCATT
TTTTCATTTGGGGTTGCTGTAAGTCTTGAACATCCTTCAAGGACTGACTG
TAGGAATGGGTCTTCGGTTGGAGAATTTAATCCTGCCATAATATGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034868-exon-sc0001227-1491911889:76747..78710 | TCONS_00034868-exon-sc0001227-1491911889:76747..78710 | Clytia hemisphaerica | exon |
| TCONS_00034868-exon-sc0001227-1510915933:76747..78710 | TCONS_00034868-exon-sc0001227-1510915933:76747..78710 | Clytia hemisphaerica | exon |
| TCONS_00034868-exon-sc0001227-1575043694:76747..78710 | TCONS_00034868-exon-sc0001227-1575043694:76747..78710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001227 | supercontig | sc0001227:76747..78710 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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