TCONS_00034865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034865
Unique NameTCONS_00034865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034865 ID=TCONS_00034865|Name=TCONS_00034865|organism=Clytia hemisphaerica|type=transcript|length=294bp
GCATACAGGTCCAACCGctcaaatccactttttccataaatataACATCA
AACACCATAGAATTATTATTCCATCCTGCTTCTGTTGAGTCAAATAGGTA
TATAATACACGTAAAGTTTTCATACATCAGTTCCCACTCATCTTTTAACA
GTCCTTTTCTGCTGGCACTGCAGAGAACAGACGTGACAGTCAACATGCAA
AAACGTCTGAATCTTGAGTCAATCGTCGTTGCATCGGCAACCTGTACTTG
GATGGCCAATACTTCTATGGGACGGTGTTGTTAACAGTATTTCA
Run BLAST on NCBI

transcript from alignment at sc0001227:67781..68074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034865 ID=TCONS_00034865|Name=TCONS_00034865|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0001227:67781..68074 (Clytia hemisphaerica)
TGAAATACTGTTAACAACACCGTCCCATAGAAGTATTGGCCATCCAAGTA
CAGGTTGCCGATGCAACGACGATTGACTCAAGATTCAGACGTTTTTGCAT
GTTGACTGTCACGTCTGTTCTCTGCAGTGCCAGCAGAAAAGGACTGTTAA
AAGATGAGTGGGAACTGATGTATGAAAACTTTACGTGTATTATATACCTA
TTTGACTCAACAGAAGCAGGATGGAATAATAATTCTATGGTGTTTGATGT
tatatttatggaaaaagtggatttgagCGGTTGGACCTGTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020283XLOC_020283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034865-exon-sc0001227-1491911889:67781..68074TCONS_00034865-exon-sc0001227-1491911889:67781..68074Clytia hemisphaericaexon
TCONS_00034865-exon-sc0001227-1510915933:67781..68074TCONS_00034865-exon-sc0001227-1510915933:67781..68074Clytia hemisphaericaexon
TCONS_00034865-exon-sc0001227-1575043694:67781..68074TCONS_00034865-exon-sc0001227-1575043694:67781..68074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:67781..68074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.77889	2.86266	1.75805	0	37.5663	20.0598	20.4154	22.3599	17.1809	21.1389	17.2613	13.6245	9.40175	10.7305	7.17942	10.283	9.37496	6.80883	11.2246	14.4342	11.1417	8.2537	8.78429	13.8879	7.15094	7.79449	11.9554	10.2526	19.8492	20.0958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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