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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034855 ID=TCONS_00034855|Name=TCONS_00034855|organism=Clytia hemisphaerica|type=transcript|length=2644bp
GTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGGCGTTTAa
aattattattactattaccGTTCTGTAAATTAGAGTTTTTGAGAGTTTCG
CGTGTtcataaaaatggtagattttgTTATTCGCATCACACGTCGATCAA
ACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATTATTAAAG
TAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACCATTTCAG
AGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGACATCGGTA
AGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGAACCAACA
AAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAAGGGGGCT
ACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCTATagctt
ttcagcaaaaatttttcaatctccTTGAAGACAAGTTTGACAGGGCAGAC
GAAAAAAGGGGAAAAGacaattcttttttagaaactCAAATCAATactat
gaaaaataaacaatctgTATACGACTTTGAAAATATATCAAATAAGCACC
AATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGCAAAAGTT
TTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAACGCAAGAA
AATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACAACCAATG
AATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCACGCGTCA
CAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTCTATAAAA
TTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTTACAAAAT
TAATAGAATCCAGAGTGTCTTGGGATAAGAGaataaatttgacattttat
cACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGCGTGTTTT
GAATAAAAGATCAATAAGAAAATATGAAGTACCacagttaaaaatatttt
cagatgctAGCGCCACGGGAATTGGAGCAATTTTAAATGATTATGTTTGT
TACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGTACATGGA
GTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTTTTAGACA
ATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCATAATTGTC
AGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGATGTATTT
ATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGATTGCTCG
AAAATACAACGAGAAAGCAGATGAAAATATTTAACATCTACAcagatttt
aggaaaaacaaaCGCGTCGATTACATGCTCAACAATCAGGGATGAGTTGA
AACAAATTTTGGAATTCGTGGTTTATCACAANCCAATTGTAGATTAAAGA
ATTCGATTATCGATTAATTTCATACATTTTCAGGTTGCAAACATTTCAAA
TTGCATACGTTTTCAAATTGCTTACGTTTTCAAGTTGTATACGTTTTCAG
TTGTATACGTTTTCAAGTTGTATACGTTTTCAGTTGTATACGTTTTCAAG
TTGTATACGTTTTCAGGTTGTATACGTTTCGGGTTACATACGTTTTCGGG
TTGTATACGTTTTCGGGTCACATACGTTTCGGGTCACAAACGTTTTCGGG
TTACATACGTTTTCAGGTTGTATACGTTTTCGGGTTGTATAAGTTTCCAG
GTTACATACGTTTTCAGGTTGTATACGTTTTCGGGTCACATACGTTTTCA
GGTTGTGTACGTTTTCGGGTTGTATAAGTTTTCAGGTTACATACGTTTTC
GGGTCACATATGTTTTCAGGTTGTGTACGTTTTCGGGTTGTATAAGTTTT
CAGGTTACATACGTTTTCAGGTTACATGCGTTTTCAGGTTGTATACGTTT
TCGGGTCACATACGTTTTCAGGTTGTATACGTTTTCGGGTCACATACGTT
TTCAAGTTGTATACGTTTTCGGGTCACATACGTTTTCAAGTTGCATACGT
TTTCGGGTTGTATACGTTTTCAAGTTTATATGAATGGTTTCAAGttgttt
tattgaatttttaggGCTCGAACTGCGACCCTCCACGGTTTTTGTTTCTA
GCAGCCTAGTTCTCAGAGACAGTCAGGGCACCCAAATTGGCGAACCGGGG
CTAGAAAGTGTTTTCATCCGAGGGGGTCAAGGAACGAGAGTAgctgtatt
attttttaaacgttttttagaggattttagacTCCTAGGGCTACGAATAG
GATTAGGACTAGGATTATGATTAGGATTAGGACTAGGACTAGGAGTAAAA
TTATAGTTAGAAATAGAACTAGGGATTAATatattttccatattttataA
GATGTTTTTAGATATGAATACGACACAGGATTTGGTACGGCTCCTACTAC
TACTAGAATACATTAAATCTGTCTCGAAATCGAGATTTCGGTTGTTGTTT
CATCGTGTTTTCAATTTtcattgggTCTTTGACAAGATTTTAGAAGAATT
aggaaataaattaatttattttcgtttcgtagataagaaaataa Run BLAST on NCBI transcript from alignment at sc0001227:2334..5738- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034855 ID=TCONS_00034855|Name=TCONS_00034855|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at sc0001227:2334..5738- (Clytia hemisphaerica)
GTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGGCGTTTAA
AATTATTATTACTATTACCGTTCTGTAAATTAGAGTTTTTGAGAGTTTCG
CGTGTTCATAAAAATGGTAGATTTTGTTATTCGCATCACACGTCGATCAA
ACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATTATTAAAG
TAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACCATTTCAG
AGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGACATCGGTA
AGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGAACCAACA
AAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAAGGGGGCT
ACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCTATAGCTT
TTCAGCAAAAATTTTTCAATCTCCTTGAAGACAAGTTTGACAGGGCAGAC
GAAAAAAGGGGAAAAGACAATTCTTTTTTAGAAACTCAAATCAATACTAT
GAAAAATAAACAATCTGTATACGACTTTGAAAATATATCAAATAAGCACC
AATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGCAAAAGTT
TTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAACGCAAGAA
AATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACAACCAATG
AATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCACGCGTCA
CAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTCTATAAAA
TTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTTACAAAAT
TAATAGAATCCAGAGTGTCTTGGGATAAGAGAATAAATTTGACATTTTAT
CACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGCGTGTTTT
GAATAAAAGATCAATAAGAAAATATGAAGTACCACAGTTAAAAATATTTT
CAGATGCTAGCGCCACGGGAATTGGAGCAATTTTAAATGATTATGTTTGT
TACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGTACATGGA
GTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTTTTAGACA
ATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCATAATTGTC
AGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGATGTATTT
ATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGATTGCTCG
AAAATACAACGAGAAAGCAGATGAAGTAAAACAGTAGATTATGACGACTG
GTTTATAAAACAAAATTTTGCGAATGCGATACAGAAAATCGGGGCGAAGT
AACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATCGGTTTT
GTTCCAAGTATTTTTTCCCCGGAAGTTTTAANGAAAATTGGGGCGAAGTA
ACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATCGGTTTTG
TTCCAAGTATTTTTGCCCCGGAAGTTTCAAGACACAGATGCTTTTTCCTT
TGATTGGACAGGAGAATTTTGTCATATTGTATCACCCATCTATTTAATTC
CCAAAGCAATTAAGCATTTTCTAGCTTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAACCTGTTACAAGTCGTAT
TCTCGAAACTTCTCTTCCTTCCTTTTTTGTTTTTGGAGAATTAGAATTTA
CGCTAAAGGCAAAATATTTTATGATACGTTATATTGTTTTTAAACGAATA
TGATTTTCAATTTCGNTGAGGAACGTTCTAATTCTAACAATTTTACTTTT
AGAATATTTAACATCTACACAGATTTTAGGAAAAACAAACGCGTCGATTA
CATGCTCAACAATCAGGGATGAGTTGAAACAAATTTTGGAATTCGTGGTT
TATCACAANCCAATTGTAGATTAAAGAATTCGATTATCGATTAATTTCAT
ACATTTTCAGGTTGCAAACATTTCAAATTGCATACGTTTTCAAATTGCTT
ACGTTTTCAAGTTGTATACGTTTTCAGTTGTATACGTTTTCAAGTTGTAT
ACGTTTTCAGTTGTATACGTTTTCAAGTTGTATACGTTTTCAGGTTGTAT
ACGTTTCGGGTTACATACGTTTTCGGGTTGCATACGTTTTCATGTTGTAT
ACGTTTTCAGGTTGTATACGTTTTCGGGTCACATACGTTTCGGGTCACAA
ACGTTTTCGGGTTACATACGTTTTCAGGTTGTATACGTTTTCGGGTTGTA
TAAGTTTCCAGGTTACATACGTTTTCAGGTTGTATACGTTTTCGGGTCAC
ATACGTTTTCAGGTTGTGTACGTTTTCGGGTTGTATAAGTTTTCAGGTTA
CATACGTTTTCGGGTCACATATGTTTTCAGGTTGTGTACGTTTTCGGGTT
GTATAAGTTTTCAGGTTACATACGTTTTCAGGTTACATGCGTTTTCAGGT
TGTATACGTTTTCGGGTCACATACGTTTTCAGGTTGTATACGTTTTCGGG
TCACATACGTTTTCAAGTTGTATACGTTTTCGGGTCACATACGTTTTCAA
GTTGCATACGTTTTCGGGTTGTATACGTTTTCAAGTTTATATGAATGGTT
TCAAGTTGTTTTATTGAATTTTTAGGGCTCGAACTGCGACCCTCCACGGT
TTTTGTTTCTAGCAGCCTAGTTCTCAGAGACAGTCAGGGCACCCAAATTG
GCGAACCGGGGCTAGAAAGTGTTTTCATCCGAGGGGGTCAAGGAACGAGA
GTAGCTGTATTATTTTTTAAACGTTTTTTAGAGGATTTTAGACTCCTAGG
GCTACGAATAGGATTAGGACTAGGATTATGATTAGGATTAGGACTAGGAC
TAGGAGTAAAATTATAGTTAGAAATAGAACTAGGGATTAATATATTTTCC
ATATTTTATAAGATGTTTTTAGATATGAATACGACACAGGATTTGGTACG
GCTCCTACTACTACTAGAATACATTAAATCTGTCTCGAAATCGAGATTTC
GGTTGTTGTTTCATCGTGTTTTCAATTTTCATTGGGTCTTTGACAAGATT
TTAGAAGAATTAGGAAATAAATTAATTTATTTTCGTTTCGTAGATAAGAA
AATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034855-exon-sc0001227-1575043694:4364..5738 | TCONS_00034855-exon-sc0001227-1575043694:4364..5738 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1575043694:3313..3636 | TCONS_00034855-exon-sc0001227-1575043694:3313..3636 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1575043694:2334..3278 | TCONS_00034855-exon-sc0001227-1575043694:2334..3278 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1510915933:4364..5738 | TCONS_00034855-exon-sc0001227-1510915933:4364..5738 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1510915933:3313..3636 | TCONS_00034855-exon-sc0001227-1510915933:3313..3636 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1510915933:2334..3278 | TCONS_00034855-exon-sc0001227-1510915933:2334..3278 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1491911889:4364..5738 | TCONS_00034855-exon-sc0001227-1491911889:4364..5738 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1491911889:3313..3636 | TCONS_00034855-exon-sc0001227-1491911889:3313..3636 | Clytia hemisphaerica | exon |
| TCONS_00034855-exon-sc0001227-1491911889:2334..3278 | TCONS_00034855-exon-sc0001227-1491911889:2334..3278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001227 | supercontig | sc0001227:2334..5738 - |
Blast
The following BLAST results are available for this feature:
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