|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034852 ID=TCONS_00034852|Name=TCONS_00034852|organism=Clytia hemisphaerica|type=transcript|length=1438bp
tcagggaaAAAAGAAGTGTGGCTCCTATGGAAAAATCCGATAAGCTAACC
GTTATAATTGGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAAT
TGGTGATGGTTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTT
TCGAGGCTTTATTGATTCGATACATTATCAATTTAGTTATTGTTTCAAGC
AATATGCTTATGGAAAAGATTTCACCTATTCAGAGCTTCAGGAAAACATG
TTATTTAGTAGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTG
GAATGGCCTTGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGT
ACACTTCCTGCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaa
aacaaaattatctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCG
TCTTGGTAGTCTGGGAACGAATTGAGacaccaaaaactgattattattCA
TATATTTTGGGGATCGTTTTTAGTTTATGTTCGGTGTTGTCTGTATGCTT
TTACTGTGtcgtcataaaaaatattacaGAGACCACTTGCCTTCAAGTGA
CACTATTCTATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCT
TGGATATTCGGTACAAGCTTTGTATTGACCAGATCGCCTCTGATTTTCAC
GTATCTTCTACTGGGAGCTGGAGTTTCATATTTTCTATGTGTTGTTTGTG
AAGTGATCGGTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGG
AATTCAGAATTTGTTTGGGCATATTCCTATGACATGATTATCACGCATAT
ATTTCCGAATTGgATTGTTATGATCGGCTTGTTGATTGTAATAGTGGCCA
CTTCAATGATTGCAGTCAATATGATTTATGATATCCCTTATTTGGCTACA
ATCAGACGTTGGGAATCGAAGATCTGCAAAACTATCTAGTTCGGATAATT
TGGTTTGCTTTCCGGACTACAATTCCTTATGCTATTATCATGGTTTGGTA
ATATTACGCTCTTAATTTAGCCATTAACAAACGATACATTTCCTCGTAAA
AGGTCCAAATCGTTAACTGGCAACCAAAAATAAGCGCATTGCCTTAATGC
aacgggtctgtaaattttcatattAGAAGATATAATATTGCTTGGTAAGG
CTAATGTCAAATATTTGAGTGATGAAATGCAATACACCCATCAACGTTTA
ACAGATTTGTTTTCCGCCCACGGTATTTTTAGCCAGTCTCCATGGTATTC
TAAATCTAAATTTTGACCAGCGATTTTTGTATTGGAAATATGATATGATA
TGCCAGTCTTGGGTGTTACTTTTGGTACGTACGAATATTCTAAAAACTAT
TTACTGTAGCTACTGTTGCATGAGCAAAATTGACtctc Run BLAST on NCBI protein sequence of TCONS_00034852-protein >TCONS_00034852-protein ID=TCONS_00034852-protein|Name=TCONS_00034852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
REKRSVAPMEKSDKLTVIIGITCSLLYALFFQIGDGLFKYTFNHSDVRVF
EALLIRYIINLVIVSSNMLMEKISPIQSFRKTCYLVAAGILRLSCVIFLG
MALKRLDMGTNAVIFGTLPAFCILFGWLLLKEKTKLSDMMYGLLSYVGVV
LVVWERIETPKTDYYSYILGIVFSLCSVLSVCFYCVVIKNITETTCLQVT
LFYIHFTGLLILPFAPWIFGTSFVLTRSPLIFTYLLLGAGVSYFLCVVCE
VIGLRCLNIALIMLLRNSEFVWAYSYDMIITHIFPNWIVMIGLLIVIVAT
SMIAVNMIYDIPYLATIRRWESKICKTI Run BLAST on NCBI transcript from alignment at sc0001227:15702..17837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034852 ID=TCONS_00034852|Name=TCONS_00034852|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at sc0001227:15702..17837+ (Clytia hemisphaerica)
tcagggaaAAAAGAAGTGTGGCTCCTATGGAAAAATCCGATAAGCTAACC
GTTATAATTGGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAAT
TGGTGATGGTTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTT
TCGAGGCTTTATTGATTCGATACATTATCAATTTAGTTATTGTTTCAAGC
AATATGCTTATGGAAAAGATTTCACCTATTCAGAGCTTCAGGAAAACATG
TTATTTAGTAGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTG
GAATGGCCTTGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGT
ACACTTCCTGCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaa
aacaaaattatctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCG
TCTTGGTAGTCTGGGAACGAATTGAGacaccaaaaactgattattattCA
TATATTTTGGGGATCGTTTTTAGTTTATGTTCGGTGTTGTCTGTATGCTT
TTACTGTGtcgtcataaaaaatattacaGAGACCACTTGCCTTCAAGTGA
CACTATTCTATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCT
TGGATATTCGGTACAAGCTTTGTATTGACCAGATCGCCTCTGATTTTCAC
GTATCTTCTACTGGGAGCTGGAGTTTCATATTTTCTATGTGTTGTTTGTG
AAGTGATCGGTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGG
AATTCAGAATTTGTTTGGGCATATTCCTATGACATGATTATCACGCATAT
ATTTCCGAATTGggtaagttttttttatcattgtaTCTTTATTACCTCAC
CTCTGCAGAGTTTGCTTCTTGAAGAGAATTTTAAACCTTCATATCACAAA
CCTGTTGAACCCCTCCCACTGGTATAAAGCATTGATATAGATAGAAGGAA
TACAAACCATCATAGGCAAAAGACtgacctgagatcagattgtgaatgtt
ttctgcacaccacgctgaagctctaaagggatgtgtgaaaacatacaatc
tgacgaatatgcaatctcgaaatcatcgtaaggaccgcgttcgtctaaaa
ggattaagaacgacaacaaagttgcgtgattgtgttcatgaatagggcgc
cgtatcagtttttagctttccagcgcataacaagattcttgttgtagaat
tttccacgagaggactattttcctcagatgtatagttttcaagcgccttc
agaggtttaccgtgcgtaagaaaattatgaacagctgttatcaggttaca
aaAGACCTACTCAATGATTAGAGTCTCAACGTTTTTATTGAACGCACATC
TGCTCAGATTTGGGAAAATCTGCAAAGATTTGTGTATTTTTCCCATgcaa
attgaatagaaaattagTTATGTTGGAGGATACACCAATCcacctatgaa
ataggctaatcaTGGGCTAATTTATGACAGTTTGTTTTCAGTttgtttgt
ttactttatagATTGTTATGATCGGCTTGTTGATTGTAATAGTGGCCACT
TCAATGATTGCAGTCAATATGATTTATGATATCCCTTATTTGGCTACAAT
CAGACGTTGGGAATCGAAGATCTGCAAAACTATCTAGTTCGGATAATTTG
GTTTGCTTTCCGGACTACAATTCCTTATGCTATTATCATGGTTTGGTAAT
ATTACGCTCTTAATTTAGCCATTAACAAACGATACATTTCCTCGTAAAAG
GTCCAAATCGTTAACTGGCAACCAAAAATAAGCGCATTGCCTTAATGCaa
cgggtctgtaaattttcatattAGAAGATATAATATTGCTTGGTAAGGCT
AATGTCAAATATTTGAGTGATGAAATGCAATACACCCATCAACGTTTAAC
AGATTTGTTTTCCGCCCACGGTATTTTTAGCCAGTCTCCATGGTATTCTA
AATCTAAATTTTGACCAGCGATTTTTGTATTGGAAATATGATATGATATG
CCAGTCTTGGGTGTTACTTTTGGTACGTACGAATATTCTAAAAACTATTT
ACTGTAGCTACTGTTGCATGAGCAAAATTGACtctc Coding sequence (CDS) from alignment at sc0001227:15702..17837+ >TCONS_00034852 ID=TCONS_00034852|Name=TCONS_00034852|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at sc0001227:15702..17837+ (Clytia hemisphaerica)
agggaaAAAAGAAGTGTGGCTCCTATGGAAAAATCCGATAAGCTAACCGT
TATAATTGGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTG
GTGATGGTTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTC
GAGGCTTTATTGATTCGATACATTATCAATTTAGTTATTGTTTCAAGCAA
TATGCTTATGGAAAAGATTTCACCTATTCAGAGCTTCAGGAAAACATGTT
ATTTAGTAGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGA
ATGGCCTTGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTAC
ACTTCCTGCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaa
caaaattatctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTC
TTGGTAGTCTGGGAACGAATTGAGacaccaaaaactgattattattCATA
TATTTTGGGGATCGTTTTTAGTTTATGTTCGGTGTTGTCTGTATGCTTTT
ACTGTGtcgtcataaaaaatattacaGAGACCACTTGCCTTCAAGTGACA
CTATTCTATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTG
GATATTCGGTACAAGCTTTGTATTGACCAGATCGCCTCTGATTTTCACGT
ATCTTCTACTGGGAGCTGGAGTTTCATATTTTCTATGTGTTGTTTGTGAA
GTGATCGGTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAA
TTCAGAATTTGTTTGGGCATATTCCTATGACATGATTATCACGCATATAT
TTCCGAATTGgATTGTTATGATCGGCTTGTTGATTGTAATAGTGGCCACT
TCAATGATTGCAGTCAATATGATTTATGATATCCCTTATTTGGCTACAAT
CAGACGTTGGGAATCGAAGATCTGCAAAACTATCTAGagggaaAAAAGAA
GTGTGGCTCCTATGGAAAAATCCGATAAGCTAACCGTTATAATTGGAATA
ACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGGTTTGTT
TAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTTTATTGA
TTCGATACATTATCAATTTAGTTATTGTTTCAAGCAATATGCTTATGGAA
AAGATTTCACCTATTCAGAGCTTCAGGAAAACATGTTATTTAGTAGCTGC
TGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCTTGAAAA
GGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCTGCATTC
TGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaattatctgA
TATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAGTCTGGG
AACGAATTGAGacaccaaaaactgattattattCATATATTTTGGGGATC
GTTTTTAGTTTATGTTCGGTGTTGTCTGTATGCTTTTACTGTGtcgtcat
aaaaaatattacaGAGACCACTTGCCTTCAAGTGACACTATTCTATATAC
ACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTCGGTACA
AGCTTTGTATTGACCAGATCGCCTCTGATTTTCACGTATCTTCTACTGGG
AGCTGGAGTTTCATATTTTCTATGTGTTGTTTGTGAAGTGATCGGTTTGA
GATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAATTTGTT
TGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAATTGgAT
TGTTATGATCGGCTTGTTGATTGTAATAGTGGCCACTTCAATGATTGCAG
TCAATATGATTTATGATATCCCTTATTTGGCTACAATCAGACGTTGGGAA
TCGAAGATCTGCAAAACTATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034852-exon-sc0001227-1491911889:15702..16564 | TCONS_00034852-exon-sc0001227-1491911889:15702..16564 | Clytia hemisphaerica | exon |
| TCONS_00034852-exon-sc0001227-1510915933:15702..16564 | TCONS_00034852-exon-sc0001227-1510915933:15702..16564 | Clytia hemisphaerica | exon |
| TCONS_00034852-exon-sc0001227-1575043694:15702..16564 | TCONS_00034852-exon-sc0001227-1575043694:15702..16564 | Clytia hemisphaerica | exon |
| TCONS_00034852-exon-sc0001227-1491911889:17263..17837 | TCONS_00034852-exon-sc0001227-1491911889:17263..17837 | Clytia hemisphaerica | exon |
| TCONS_00034852-exon-sc0001227-1510915933:17263..17837 | TCONS_00034852-exon-sc0001227-1510915933:17263..17837 | Clytia hemisphaerica | exon |
| TCONS_00034852-exon-sc0001227-1575043694:17263..17837 | TCONS_00034852-exon-sc0001227-1575043694:17263..17837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001227 | supercontig | sc0001227:15702..17837 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
|
