TCONS_00034848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034848
Unique NameTCONS_00034848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034848 ID=TCONS_00034848|Name=TCONS_00034848|organism=Clytia hemisphaerica|type=transcript|length=260bp
actGCGGTTACAGTACAGTAAATGTAAGCCACTTTGATTTGGAAAACTAA
CAAAATGAATGACGGCGATTGTCCCTTCTCCATGGTCCCTGCATTACTAT
CTGGTCCCTTCATAGATTCATAAGTCCGTAATGTTGTTCGTCAGGTCTGC
CGTATTTGACTGTATCTTTGTGTATTTACTGATCGCGCATTTTAAACCAC
CAAAGGACTTTAGCTAAAGCGGCACCATACTCTCTTTGATCCTCCTCTTT
GTGCTGCAGT
Run BLAST on NCBI

transcript from alignment at sc0001226:14792..15051

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034848 ID=TCONS_00034848|Name=TCONS_00034848|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0001226:14792..15051 (Clytia hemisphaerica)
ACTGCAGCACAAAGAGGAGGATCAAAGAGAGTATGGTGCCGCTTTAGCTA
AAGTCCTTTGGTGGTTTAAAATGCGCGATCAGTAAATACACAAAGATACA
GTCAAATACGGCAGACCTGACGAACAACATTACGGACTTATGAATCTATG
AAGGGACCAGATAGTAATGCAGGGACCATGGAGAAGGGACAATCGCCGTC
ATTCATTTTGTTAGTTTTCCAAATCAAAGTGGCTTACATTTACTGTACTG
TAACCGCagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020273XLOC_020273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034848-exon-sc0001226-1491911889:14792..15051TCONS_00034848-exon-sc0001226-1491911889:14792..15051Clytia hemisphaericaexon
TCONS_00034848-exon-sc0001226-1510915933:14792..15051TCONS_00034848-exon-sc0001226-1510915933:14792..15051Clytia hemisphaericaexon
TCONS_00034848-exon-sc0001226-1575043694:14792..15051TCONS_00034848-exon-sc0001226-1575043694:14792..15051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001226supercontigsc0001226:14792..15051 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.727204	288.93	289.83	53.7443	54.2553	1.59968	8.63013	7.03038	0.437213	0	0	0	0.800082	0.492818	1.20748	2.09356	0	0	0	2.17777	1.67709	3.52417	0	3.04464	2.88204	3.35806	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top