TCONS_00034847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034847
Unique NameTCONS_00034847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034847 ID=TCONS_00034847|Name=TCONS_00034847|organism=Clytia hemisphaerica|type=transcript|length=868bp
CTCCTGTCCTGGTGACATGAGTGATAAACTTCGTTCCTTAATATCTGATC
TCAACAAGGTCGTCACTAGCAGCGTTAGTGATGAAATTGATGATGAGCTT
GAATTTCAGTTTCAAGCTCATCATCTATGTAGTTATTATGTTGACTGCGA
TGAATTCAAATCGCTTGCAGCCAACACTCCATCTAAATTTTCTGCCTTTC
ACCTGAACATTGCTTCACTCTCAAAACATTTTGACGACCTTGAAGATTTG
CATGCCCTCCTCAATTCTAATTAATTTTAGTGTCATAGGGATTTCAGAAA
CCAAAAGCCTAGTTGACAACGAAACAGAAAGTCCTCTCGAAAAAAAAGAG
GACTTTActttataccgtgagattgggtaacttgtaAATAATAACCAGGA
GGTTTTTCTACTTTAGTAATATTTACGTTAGTGAATGTTTGACTGAAACG
ATATAAACagataaagaatatatacaatgAAGGTGATATATGTCTATCTC
CCCCATAGGTTCAAAATGTCCAACATAAAGATAAAATATAGGATCATCTT
ATCAGTCCTTTCTGTTATGATccatcgaaaaagaaaaaaaatgaaacagg
GCTGGATCATTCTTTCAGTCCCTTGTTATTATGATCCAGCAGACGACGTA
GGGCCAGAGGTAACTTCTGTGCTGTTGTGGGTGAAGACAGTTCTCTGGCT
GAACCAACGTCTCCAGGGTTGCCGGACGTCGGAGTCGGAGGCGGAGTTTG
TACGGGCAAGTCATGAACGATGGAATCCCTCGGAGGATTGACATTGGGTG
TCGATGGGGTGTCCCCTGGAGTGGATCGAGGTGTTTCCATTGGGCCATCA
AGTTTTGCTGGTCGGATG
Run BLAST on NCBI

protein sequence of TCONS_00034847-protein

>TCONS_00034847-protein ID=TCONS_00034847-protein|Name=TCONS_00034847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MKVIYVYLPHRFKMSNIKIKYRIILSVLSVMIHRKRKKMKQGWIILSVPC
YYDPADDVGPEVTSVLLWVKTVLWLNQRLQGCRTSESEAEFVRASHERWN
PSED
Run BLAST on NCBI

transcript from alignment at sc0001226:2258..3125

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034847 ID=TCONS_00034847|Name=TCONS_00034847|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at sc0001226:2258..3125 (Clytia hemisphaerica)
CATCCGACCAGCAAAACTTGATGGCCCAATGGAAACACCTCGATCCACTC
CAGGGGACACCCCATCGACACCCAATGTCAATCCTCCGAGGGATTCCATC
GTTCATGACTTGCCCGTACAAACTCCGCCTCCGACTCCGACGTCCGGCAA
CCCTGGAGACGTTGGTTCAGCCAGAGAACTGTCTTCACCCACAACAGCAC
AGAAGTTACCTCTGGCCCTACGTCGTCTGCTGGATCATAATAACAAGGGA
CTGAAAGAATGATCCAGCcctgtttcattttttttctttttcgatggATC
ATAACAGAAAGGACTGATAAGATGATCCTATATTTTATCTTTATGTTGGA
CATTTTGAACCTATGGGGGAGATAGACATATATCACCTTcattgtatata
ttctttatctGTTTATATCGTTTCAGTCAAACATTCACTAACGTAAATAT
TACTAAAGTAGAAAAACCTCCTGGTTATTATTtacaagttacccaatctc
acggtataaagTAAAGTCCTCTTTTTTTTCGAGAGGACTTTCTGTTTCGT
TGTCAACTAGGCTTTTGGTTTCTGAAATCCCTATGACACTAAAATTAATT
AGAATTGAGGAGGGCATGCAAATCTTCAAGGTCGTCAAAATGTTTTGAGA
GTGAAGCAATGTTCAGGTGAAAGGCAGAAAATTTAGATGGAGTGTTGGCT
GCAAGCGATTTGAATTCATCGCAGTCAACATAATAACTACATAGATGATG
AGCTTGAAACTGAAATTCAAGCTCATCATCAATTTCATCACTAACGCTGC
TAGTGACGACCTTGTTGAGATCAGATATTAAGGAACGAAGTTTATCACTC
ATGTCACCAGGACAGGAG

Coding sequence (CDS) from alignment at sc0001226:2258..3125

>TCONS_00034847 ID=TCONS_00034847|Name=TCONS_00034847|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001226:2258..3125 (Clytia hemisphaerica)
TCAATCCTCCGAGGGATTCCATCGTTCATGACTTGCCCGTACAAACTCCG
CCTCCGACTCCGACGTCCGGCAACCCTGGAGACGTTGGTTCAGCCAGAGA
ACTGTCTTCACCCACAACAGCACAGAAGTTACCTCTGGCCCTACGTCGTC
TGCTGGATCATAATAACAAGGGACTGAAAGAATGATCCAGCcctgtttca
ttttttttctttttcgatggATCATAACAGAAAGGACTGATAAGATGATC
CTATATTTTATCTTTATGTTGGACATTTTGAACCTATGGGGGAGATAGAC
ATATATCACCTTcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020272XLOC_020272Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034847-proteinTCONS_00034847-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034847-exon-sc0001226-1491911889:2258..3125TCONS_00034847-exon-sc0001226-1491911889:2258..3125Clytia hemisphaericaexon
TCONS_00034847-exon-sc0001226-1510915933:2258..3125TCONS_00034847-exon-sc0001226-1510915933:2258..3125Clytia hemisphaericaexon
TCONS_00034847-exon-sc0001226-1575043694:2258..3125TCONS_00034847-exon-sc0001226-1575043694:2258..3125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001226supercontigsc0001226:2258..3125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738049	0.592846	1.32303	1.13848	1.39814	1.45578	2.34818	2.15799	0.697752	0.770706	0.927228	0.824941	0.787067	0.743921	0.569802	0.504469	0.619298	0.844336	1.26331	0.659274	1.07269	0.473182	0.0618118	0.367218	1.29181	1.72487	0.258508	0.497026	0.373324	0.58079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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