|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034844 ID=TCONS_00034844|Name=TCONS_00034844|organism=Clytia hemisphaerica|type=transcript|length=703bp
ATCGTGCTATCAGTAACAGGAGCCTTAGTGGGTACATTCTTATGTTTGAT
CGTTCCCACATGTTTGTTTTTGGCCAATGGAGCGAAGGATAGCGCCAAGA
AAATCGCACAGttCATTTTGGTGATCAGTGCTTTCAGCATGGTCTTTAGT
ACCATTTCTGTCCTCTCGTCCATCAATAACGTGCAACAAGATCCTGTtgt
ccaacaacaacaacaacaacaacaacagcaacagcaACAGCAACAGCAAC
AACAGCTGCAAAAGCAAGTTGAGCTTCAACAGATCCAGCGTGCGATCCCA
TCAACAGAGAAATTTGAAATCCATCAAGCTTCTTTGCAACGAATAGTTAA
ACAGTCAACGACAACCACCTCGACTATAATCAAACGCAtcactgatgacg
tcataacttcTGAAAATATGATTGAGAAAGGAAAAACAGTAAAAGACCTT
CAAAATGAAGTAGTTGCGAAAGGACAAGGTCAAGCAAGCGAGGGTGTTAT
AAACATTAAATCTAGCAAACCCCTTGGAAAACCTTTAGCAGGAAAGAATA
GAACGTCAGTCGGTTCTTGAAATCGCGTTCATCCCTTGCCACAAAGTAAA
GGTTTGattttctattcatgatatgcaccgcTGCAATGaattcacgaaat
tatgcaacttttctgtttttgttccacccaatacgacactttttctattg
ttt Run BLAST on NCBI protein sequence of TCONS_00034844-protein >TCONS_00034844-protein ID=TCONS_00034844-protein|Name=TCONS_00034844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
IVLSVTGALVGTFLCLIVPTCLFLANGAKDSAKKIAQFILVISAFSMVFS
TISVLSSINNVQQDPVVQQQQQQQQQQQQQQQQQQLQKQVELQQIQRAIP
STEKFEIHQASLQRIVKQSTTTTSTIIKRITDDVITSENMIEKGKTVKDL
QNEVVAKGQGQASEGVINIKSSKPLGKPLAGKNRTSVGS Run BLAST on NCBI transcript from alignment at sc0001226:24590..25962- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034844 ID=TCONS_00034844|Name=TCONS_00034844|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at sc0001226:24590..25962- (Clytia hemisphaerica)
ATCGTGCTATCAGTAACAGGAGCCTTAGTGGGTACATTCTTATGTTTGAT
CGTTCCCACATGTTTGTTTTTGGCCAATGGAGCGAAGGATAGCGCCAAGA
AAATCGCACAGGTTTGTAAAGATGATTATCCTGAAATTTTCAGGTTCTTG
AAAGGGTTTTTTTTAATAACTAACTACTGAACATATTTTTCAATGAGGAA
AATAATCGACGTAACATATAGCCCGGGGTCCACTTAAAGCTTTTTTAAAT
ACTTGATTGCGCGATTAAGTGACCCAGTAGTATGGAAGTTTTCAATTCTG
AGTTTTTGCTTACCGTCCGCCAAATTTTAGTTGTTTTTGGAAGGTAAAAA
AAGGGATAAGGCAATGTTTTTATTTCAAAATAATGTTATTCATGTTTGTT
ACCCATGCTTAATTATATGTTTCAACTCCAAGTAGCTTTTCTTCTGAAAT
TTTGGGATGGGCTGGAGTTTTTACAAGAGACTTCACTAATTGGTTATTTG
AAGTAATAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTAT
TACAGGTTAACGACCAACCAAATCAAACGAGAGCTTGTAAAAACTCAAGC
TTGTCCCGAAATTTTGGTGTTTTTCCTTCAAAATGGCGACTACGTCAAGT
GCTCCTAGTCTACGTCACTGGACTCAGCATCATCAAAGATTATTAAAAAA
CAAAGTTCAGTCAGAAGTAGACTCCATTCTATCCATTATTTTATCTATCT
TTACACTCGTTTTATTTTTCTTTCTTTTCAGTTCATTTTGGTGATCAGTG
CTTTCAGCATGGTCTTTAGTACCATTTCTGTCCTCTCGTCCATCAATAAC
GTGCAACAAGATCCTGTTGTCCAACAACAACAACAACAACAACAACAGCA
ACAGCAACAGCAACAGCAACAACAGCTGCAAAAGCAAGTTGAGCTTCAAC
AGATCCAGCGTGCGATCCCATCAACAGAGAAATTTGAAATCCATCAAGCT
TCTTTGCAACGAATAGTTAAACAGTCAACGACAACCACCTCGACTATAAT
CAAACGCATCACTGATGACGTCATAACTTCTGAAAATATGATTGAGAAAG
GAAAAACAGTAAAAGACCTTCAAAATGAAGTAGTTGCGAAAGGACAAGGT
CAAGCAAGCGAGGGTGTTATAAACATTAAATCTAGCAAACCCCTTGGAAA
ACCTTTAGCAGGAAAGAATAGAACGTCAGTCGGTTCTTGAAATCGCGTTC
ATCCCTTGCCACAAAGTAAAGGTTTGATTTTCTATTCATGATATGCACCG
CTGCAATGAATTCACGAAATTATGCAACTTTTCTGTTTTTGTTCCACCCA
ATACGACACTTTTTCTATTGTTT Coding sequence (CDS) from alignment at sc0001226:24590..25962- >TCONS_00034844 ID=TCONS_00034844|Name=TCONS_00034844|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0001226:24590..25962- (Clytia hemisphaerica)
TTCATTTTGGTGATCAGTGCTTTCAGCATGGTCTTTAGTACCATTTCTGT
CCTCTCGTCCATCAATAACGTGCAACAAGATCCTGTTGTCCAACAACAAC
AACAACAACAACAACAGCAACAGCAACAGCAACAGCAACAACAGCTGCAA
AAGCAAGTTGAGCTTCAACAGATCCAGCGTGCGATCCCATCAACAGAGAA
ATTTGAAATCCATCAAGCTTCTTTGCAACGAATAGTTAAACAGTCAACGA
CAACCACCTCGACTATAATCAAACGCATCACTGATGACGTCATAACTTCT
GAAAATATGATTGAGAAAGGAAAAACAGTAAAAGACCTTCAAAATGAAGT
AGTTGCGAAAGGACAAGGTCAAGCAAGCGAGGGTGTTATAAACATTAAAT
CTAGCAAACCCCTTGGAAAACCTTTAGCAGGAAAGAATAGAACGTCAGTC
GGTTCTTGAATCGTGCTATCAGTAACAGGAGCCTTAGTGGGTACATTCTT
ATGTTTGATCGTTCCCACATGTTTGTTTTTGGCCAATGGAGCGAAGGATA
GCGCCAAGAAAATCGCACAGTTCATTTTGGTGATCAGTGCTTTCAGCATG
GTCTTTAGTACCATTTCTGTCCTCTCGTCCATCAATAACGTGCAACAAGA
TCCTGTTGTCCAACAACAACAACAACAACAACAACAGCAACAGCAACAGC
AACAGCAACAACAGCTGCAAAAGCAAGTTGAGCTTCAACAGATCCAGCGT
GCGATCCCATCAACAGAGAAATTTGAAATCCATCAAGCTTCTTTGCAACG
AATAGTTAAACAGTCAACGACAACCACCTCGACTATAATCAAACGCATCA
CTGATGACGTCATAACTTCTGAAAATATGATTGAGAAAGGAAAAACAGTA
AAAGACCTTCAAAATGAAGTAGTTGCGAAAGGACAAGGTCAAGCAAGCGA
GGGTGTTATAAACATTAAATCTAGCAAACCCCTTGGAAAACCTTTAGCAG
GAAAGAATAGAACGTCAGTCGGTTCTTGAATCGTGCTATCAGTAACAGGA
GCCTTAGTGGGTACATTCTTATGTTTGATCGTTCCCACATGTTTGTTTTT
GGCCAATGGAGCGAAGGATAGCGCCAAGAAAATCGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034844-exon-sc0001226-1575043694:25852..25962 | TCONS_00034844-exon-sc0001226-1575043694:25852..25962 | Clytia hemisphaerica | exon |
| TCONS_00034844-exon-sc0001226-1575043694:24590..25181 | TCONS_00034844-exon-sc0001226-1575043694:24590..25181 | Clytia hemisphaerica | exon |
| TCONS_00034844-exon-sc0001226-1510915933:25852..25962 | TCONS_00034844-exon-sc0001226-1510915933:25852..25962 | Clytia hemisphaerica | exon |
| TCONS_00034844-exon-sc0001226-1510915933:24590..25181 | TCONS_00034844-exon-sc0001226-1510915933:24590..25181 | Clytia hemisphaerica | exon |
| TCONS_00034844-exon-sc0001226-1491911889:25852..25962 | TCONS_00034844-exon-sc0001226-1491911889:25852..25962 | Clytia hemisphaerica | exon |
| TCONS_00034844-exon-sc0001226-1491911889:24590..25181 | TCONS_00034844-exon-sc0001226-1491911889:24590..25181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001226 | supercontig | sc0001226:24590..25962 - |
Blast
The following BLAST results are available for this feature:
|
