TCONS_00034836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034836
Unique NameTCONS_00034836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034836 ID=TCONS_00034836|Name=TCONS_00034836|organism=Clytia hemisphaerica|type=transcript|length=442bp
TTCTCGATACACTTTTGTTGGACTTCTTGTATCCATTAAGAATGTAGAAT
GATTTGGTGTAGAGAAGAGTTGACAATAAGAATACAATGATATTGACTGG
TAGAGCAAGCGGAAACGTAGATCTATTTCCGACGTAGAAGATATTCAATA
TTGATGGAACACATGTCTGATATAAGACAGAAATATAAAAGATGAACAGC
AAAAATCGATACCAAGATTTTGGGAATTTTGTTTCATACTCTTGTAAATG
TTTGATCCTCATAAAACGATCAAAGGCGATAACACCAATGATGTAGCGGC
TTCCGAACGTTGTGAAGGGCGAGAAGAAGCGCTCACTGATTAGGTAATAA
CATGATACTTTTGCAGGTAATATTATCATTGGATATTTGTAGAATGTAGA
TAAACATCCCAATATATCGAAAATAGTTGCGTAAAAGATGAG
Run BLAST on NCBI

protein sequence of TCONS_00034836-protein

>TCONS_00034836-protein ID=TCONS_00034836-protein|Name=TCONS_00034836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
LIFYATIFDILGCLSTFYKYPMIILPAKVSCYYLISERFFSPFTTFGSRY
IIGVIAFDRFMRIKHLQEYETKFPKSWYRFLLFIFYISVLYQTCVPSILN
IFYVGNRSTFPLALPVNIIVFLLSTLLYTKSFYILNGYKKSNKSVSR
Run BLAST on NCBI

transcript from alignment at sc0001224:12187..12628

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034836 ID=TCONS_00034836|Name=TCONS_00034836|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0001224:12187..12628 (Clytia hemisphaerica)
CTCATCTTTTACGCAACTATTTTCGATATATTGGGATGTTTATCTACATT
CTACAAATATCCAATGATAATATTACCTGCAAAAGTATCATGTTATTACC
TAATCAGTGAGCGCTTCTTCTCGCCCTTCACAACGTTCGGAAGCCGCTAC
ATCATTGGTGTTATCGCCTTTGATCGTTTTATGAGGATCAAACATTTACA
AGAGTATGAAACAAAATTCCCAAAATCTTGGTATCGATTTTTGCTGTTCA
TCTTTTATATTTCTGTCTTATATCAGACATGTGTTCCATCAATATTGAAT
ATCTTCTACGTCGGAAATAGATCTACGTTTCCGCTTGCTCTACCAGTCAA
TATCATTGTATTCTTATTGTCAACTCTTCTCTACACCAAATCATTCTACA
TTCTTAATGGATACAAGAAGTCCAACAAAAGTGTATCGAGAA

Coding sequence (CDS) from alignment at sc0001224:12187..12628

>TCONS_00034836 ID=TCONS_00034836|Name=TCONS_00034836|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0001224:12187..12628 (Clytia hemisphaerica)
CTCATCTTTTACGCAACTATTTTCGATATATTGGGATGTTTATCTACATT
CTACAAATATCCAATGATAATATTACCTGCAAAAGTATCATGTTATTACC
TAATCAGTGAGCGCTTCTTCTCGCCCTTCACAACGTTCGGAAGCCGCTAC
ATCATTGGTGTTATCGCCTTTGATCGTTTTATGAGGATCAAACATTTACA
AGAGTATGAAACAAAATTCCCAAAATCTTGGTATCGATTTTTGCTGTTCA
TCTTTTATATTTCTGTCTTATATCAGACATGTGTTCCATCAATATTGAAT
ATCTTCTACGTCGGAAATAGATCTACGTTTCCGCTTGCTCTACCAGTCAA
TATCATTGTATTCTTATTGTCAACTCTTCTCTACACCAAATCATTCTACA
TTCTTAATGGATACAAGAAGTCCAACAAAAGTGTATCGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020265XLOC_020265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034836-exon-sc0001224-1491911889:12187..12628TCONS_00034836-exon-sc0001224-1491911889:12187..12628Clytia hemisphaericaexon
TCONS_00034836-exon-sc0001224-1510915933:12187..12628TCONS_00034836-exon-sc0001224-1510915933:12187..12628Clytia hemisphaericaexon
TCONS_00034836-exon-sc0001224-1575043694:12187..12628TCONS_00034836-exon-sc0001224-1575043694:12187..12628Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034836-proteinTCONS_00034836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001224supercontigsc0001224:12187..12628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456795	0.742412	0.862011	0.337337	0.205338	0.162261	0.978803	0.733075	0.641554	0	0.617059	0.507038	0.101267	0	0	0	0.342914	0.117159	0	0.169376	0.736092	0.215424	0.349168	0.317444	0.16348	0.729511	0	0.222822	0.845011	0.172187
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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