TCONS_00034835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034835
Unique NameTCONS_00034835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034835 ID=TCONS_00034835|Name=TCONS_00034835|organism=Clytia hemisphaerica|type=transcript|length=483bp
TGGAAAAGGAAAGCTACCAATAAATTAAAGATACAGCCAACTAAAGCAAT
GGTACCAATAATGATCAATAAATAAAGTTTCTGACTATCATTTATTGGTA
GGTATTGTTGACGTCTTGTTTGACAAAAATCCCACGTCTCATTACTGCTG
CTGTTCGTTGAGAATGTTTTGTTACCAAAGCTTGAAGATATTAACATCAT
TGAGACTTGGCGAATGAGCCAAAAATTGAATTGGCTCAGCTTTTATTCTT
CTACTGTTCTTGATATAATTTATATGTTTCTACATAAAATCTTCTATAGG
CTTTAATCAAATGTCTTCGGTGTCCATCAGCTGATGTGGTGAATATTAAT
CGCTTGTAGGTTTTAGTCAAAAAGGATTTGAATTAAAATCCAATAAAATC
GCCTGGTGTACAATGGTTAATTTTCGCAACAGTATAAAAGCAATACTCTc
cttaatgttttttttcttcactagTGAAAAGCA
Run BLAST on NCBI

transcript from alignment at sc0001224:11034..11516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034835 ID=TCONS_00034835|Name=TCONS_00034835|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at sc0001224:11034..11516 (Clytia hemisphaerica)
TGCTTTTCActagtgaagaaaaaaaacattaaggAGAGTATTGCTTTTAT
ACTGTTGCGAAAATTAACCATTGTACACCAGGCGATTTTATTGGATTTTA
ATTCAAATCCTTTTTGACTAAAACCTACAAGCGATTAATATTCACCACAT
CAGCTGATGGACACCGAAGACATTTGATTAAAGCCTATAGAAGATTTTAT
GTAGAAACATATAAATTATATCAAGAACAGTAGAAGAATAAAAGCTGAGC
CAATTCAATTTTTGGCTCATTCGCCAAGTCTCAATGATGTTAATATCTTC
AAGCTTTGGTAACAAAACATTCTCAACGAACAGCAGCAGTAATGAGACGT
GGGATTTTTGTCAAACAAGACGTCAACAATACCTACCAATAAATGATAGT
CAGAAACTTTATTTATTGATCATTATTGGTACCATTGCTTTAGTTGGCTG
TATCTTTAATTTATTGGTAGCTTTCCTTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020264XLOC_020264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034835-exon-sc0001224-1491911889:11034..11516TCONS_00034835-exon-sc0001224-1491911889:11034..11516Clytia hemisphaericaexon
TCONS_00034835-exon-sc0001224-1510915933:11034..11516TCONS_00034835-exon-sc0001224-1510915933:11034..11516Clytia hemisphaericaexon
TCONS_00034835-exon-sc0001224-1575043694:11034..11516TCONS_00034835-exon-sc0001224-1575043694:11034..11516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001224supercontigsc0001224:11034..11516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.126264	0.733024	0.14343	0	0	2.16408	0.779227	0	0	0	0.603635	0.0861136	0	0.0735235	0	0.291602	0	0	0	0.125189	0	0.14846	0.404915	0.139018	0	0.177544	0	0	0.439264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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