TCONS_00034832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034832
Unique NameTCONS_00034832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034832 ID=TCONS_00034832|Name=TCONS_00034832|organism=Clytia hemisphaerica|type=transcript|length=592bp
agCGATAATTGttaaactttgtgatgacgtcatcacctttatgatgacgt
taTCAACcctaatttttttctatgaactccttttatgataGAGAACATTT
ATGCCAAATTTAaagtccataccttttctagatcaaaagttatgcaaggc
tggtggaaaacacccccccttgagaatacaaaatccgaaaaagcctgata
ataatagggttaaggggTATTTTAACACCTTTAAGTTCTTCTAAGGTATG
TTGGACTATGTAAGAATTAACATTTAAGCATTTGAGACGTGGTATAGTCT
TTATAAATTCATTCAATGGGCAATAAAAATCGTGTGTGCATAACTCAACT
ATCGGCAAGTTCGAAATTTCCTTTAAGAAGTTAACGTCCATGATTCCGAG
CATAAAAGTTGGTTTTGACCAGATTCTCTCCAATGATAGCGAGTACATCC
TTTTAGACATTAACGATATGTTTTTAGCATCTCTGGTTGTAAGGTAagag
aatattttctttaacaACTCGTTTGGTACTAAGTTGAAATCCATATTTCC
TTTTAAgtattttcgttttctttttaaattttacgcctaaaa
Run BLAST on NCBI

protein sequence of TCONS_00034832-protein

>TCONS_00034832-protein ID=TCONS_00034832-protein|Name=TCONS_00034832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MDFNLVPNELLKKIFSYLTTRDAKNISLMSKRMYSLSLERIWSKPTFMLG
IMDVNFLKEISNLPIVELCTHDFYCPLNEFIKTIPRLKCLNVNSYIVQHT
LEELKGVKIPLNPIIIRLFRILYSQGGVFSTSLA
Run BLAST on NCBI

transcript from alignment at sc0001224:6849..7440

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034832 ID=TCONS_00034832|Name=TCONS_00034832|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at sc0001224:6849..7440 (Clytia hemisphaerica)
ttttaggcgtaaaatttaaaaagaaaacgaaaatacTTAAAAGGAAATAT
GGATTTCAACTTAGTACCAAACGAGTtgttaaagaaaatattctctTACC
TTACAACCAGAGATGCTAAAAACATATCGTTAATGTCTAAAAGGATGTAC
TCGCTATCATTGGAGAGAATCTGGTCAAAACCAACTTTTATGCTCGGAAT
CATGGACGTTAACTTCTTAAAGGAAATTTCGAACTTGCCGATAGTTGAGT
TATGCACACACGATTTTTATTGCCCATTGAATGAATTTATAAAGACTATA
CCACGTCTCAAATGCTTAAATGTTAATTCTTACATAGTCCAACATACCTT
AGAAGAACTTAAAGGTGTTAAAATAccccttaaccctattattatcaggc
tttttcggattttgtattctcaagggggggtgttttccaccagccttgca
taacttttgatctagaaaaggtatggacttTAAATTTGGCATAAATGTTC
TCtatcataaaaggagttcatagaaaaaaattaggGTTGAtaacgtcatc
ataaaggtgatgacgtcatcacaaagtttaaCAATTATCGct

Coding sequence (CDS) from alignment at sc0001224:6849..7440

>TCONS_00034832 ID=TCONS_00034832|Name=TCONS_00034832|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0001224:6849..7440 (Clytia hemisphaerica)
ATGGATTTCAACTTAGTACCAAACGAGTtgttaaagaaaatattctctTA
CCTTACAACCAGAGATGCTAAAAACATATCGTTAATGTCTAAAAGGATGT
ACTCGCTATCATTGGAGAGAATCTGGTCAAAACCAACTTTTATGCTCGGA
ATCATGGACGTTAACTTCTTAAAGGAAATTTCGAACTTGCCGATAGTTGA
GTTATGCACACACGATTTTTATTGCCCATTGAATGAATTTATAAAGACTA
TACCACGTCTCAAATGCTTAAATGTTAATTCTTACATAGTCCAACATACC
TTAGAAGAACTTAAAGGTGTTAAAATAccccttaaccctattattatcag
gctttttcggattttgtattctcaagggggggtgttttccaccagccttg
cataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020261XLOC_020261Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034832-proteinTCONS_00034832-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034832-exon-sc0001224-1491911889:6849..7440TCONS_00034832-exon-sc0001224-1491911889:6849..7440Clytia hemisphaericaexon
TCONS_00034832-exon-sc0001224-1510915933:6849..7440TCONS_00034832-exon-sc0001224-1510915933:6849..7440Clytia hemisphaericaexon
TCONS_00034832-exon-sc0001224-1575043694:6849..7440TCONS_00034832-exon-sc0001224-1575043694:6849..7440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001224supercontigsc0001224:6849..7440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5384	13.0972	4.6253	4.28495	4.12	1.98205	3.80967	5.88586	4.21115	4.71053	4.77589	3.67674	2.77529	1.88105	2.75273	3.41835	2.96597	5.2831	2.44037	2.44267	4.7681	3.9942	12.0946	13.499	4.15778	4.54374	1.58084	3.047	9.42948	7.52931
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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