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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034827 ID=TCONS_00034827|Name=TCONS_00034827|organism=Clytia hemisphaerica|type=transcript|length=6573bpRun BLAST on NCBI protein sequence of TCONS_00034827-protein >TCONS_00034827-protein ID=TCONS_00034827-protein|Name=TCONS_00034827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2152bp LPSTIDVNQLKLIVESNTLSYGLYKICLKVQMQIEERFQDEECGFIDVIPRun BLAST on NCBI transcript from alignment at sc0001224:44776..70609+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034827 ID=TCONS_00034827|Name=TCONS_00034827|organism=Clytia hemisphaerica|type=transcript|length=25834bp|location=Sequence derived from alignment at sc0001224:44776..70609+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001224:44776..70609+ >TCONS_00034827 ID=TCONS_00034827|Name=TCONS_00034827|organism=Clytia hemisphaerica|type=CDS|length=129180bp|location=Sequence derived from alignment at sc0001224:44776..70609+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00034827 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 202.986 bits (515), Expect = 6.927e-52 Identity = 121/352 (34.38%), Postives = 198/352 (56.25%), Query Frame = 1
Query: 2749 LNYSISITKAKCLFWDPVNETWGSNGCVVGIETTPSKTQCLCNHLTDFAGDVMVAPNPIDMDQVFAGLKNLGDNLGVLMVIITXXXXXXXXXXXXXXKDRRDIIEEQIITVDCTRDETTQQNILLNIVTGAGFGCGTTANVNCLLTGEKGKTDVIPLRCTGRKLFQSRSTIAIKIRLAKNIGNLTSIRIFHDNSGKSPSWYLRSIFAIDMDNESDYHFVCDSWLAVESHDGQIEKLLTVADETELKQFHLVFASTVSKNLVDGHIWFSVFMRPKNSPFTRVRRLSACLALIFLVMLTNAMFFGAGDSPGSRKIVWLGEFKINFTGXXXXXXXXXXXVPPSILIVEIFRRLGP 3804
L I+ + C+FWD V ETW +GC VG T+P +T CLCNHLT F +V N I++ Q DN V+ + L ++Y ++++WARRKD +D + ++ ++ D Q + L+ + TG G T++ V L G G+ + L +F+ + A + +G L S+R++HDNSG PSWY+ + D+ + ++F+C+SWL++ D ++K+ VA E + KQF +F S DGHIW+S+F R S FTRV+R+S C +L+ MLT+ MF+G P +K+ LG+ + + ++IG++S+ ++ P ++LIV+IF+ P
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE-DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRP 1620 HSP 2 Score: 152.14 bits (383), Expect = 2.146e-36 Identity = 95/316 (30.06%), Postives = 162/316 (51.27%), Query Frame = 1
Query: 5185 WEYFTASQLRGFPIVGRTNTYPGSGYVANLGYNEETSWTVLADLHIHNWLDKQTRAVFTEFTVYNANINLFMTAFLYLETLPTGGAFPWADFKIFNGYRYSAKEGLQSLWAEMVFICFIVYFAVVEIRRMLKLKLRYFKSFFNLIEAALMPLYMFMFVLILIRWLTTSANIKTFKENPKDFVSFQYSASADSALMSVIGIVCFLLNIKFLRLLQFAKLFFVIGKVIQAFTAPLMYFMVPFTTYFLLFSWSAHLAFGSYLEEFQTIPRTITSQFLHLLGAADFESMSDARPIVGPMYFLAYSGFMLFVAFNMFMAII 6132
W+Y + Q +G+PI G+ Y G GYV LG + + +L L + WLD TRAVF E TVYNAN+NLF L LET G F A + Y ++ + AE+++ F++Y+ VV+ +RM K YF S +NL+E A++ + + R + +++ + + ++ +SF +A+AD+AL +I + L +K LL+ +I ++ + FM+ T L +S +++L FG L ++T+ + LG ++E + D P++G + FM FV N+F+++I
Sbjct: 2079 WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVI 2394 The following BLAST results are available for this feature:
BLAST of TCONS_00034827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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