TCONS_00034774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034774
Unique NameTCONS_00034774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034774 ID=TCONS_00034774|Name=TCONS_00034774|organism=Clytia hemisphaerica|type=transcript|length=2677bp
CAACAATGAGTGACATTGTCATAAGAAGCCGGTGATGCTGACTCAAATGA
TGATTTCTCAAGTGATTCAGATAGTGATAGTGAATTGGATGAAGTCGATC
CATCAGATAGTGAGAATGATGAGGTCGCAGATCATTCTGTGGATGTTGAA
TGCCCTCGAGCAAAATGTTTGGCATTGGTTTTGCGTGCAATCTTCCTTTT
CCAAGTTCATGCTTTTATTTCCAATGCATCCATCGTAGTGCTTCTTGGGA
TGATCAGGGTGGTCATAAACTTAATTGCATCGCTGGCTTGTTTCGATATT
CTTTCTTCATTTGCAAAAGAATTTCCATCAACATTGTATTCCGCATACAA
GAAGGCAGGCATAACAGTTGATGATTTCGAAACCTGGGTTGTTTGCCCTC
AGTGTAATTCTTTATACAAATTCGACAATTGTTTTGAAACTAGAAAAGGA
CATAGTAAAAAGACAGTGAAATCCTGTACCTTCAAACCACCATTTACAAG
AGCTGTTCAATGTAACacaaaattattgaaagttcGATTTACAGCAGCTG
GAAACACAACATATGTACCGAAGAAAATCTATTGTACAAGAAGAATTGAT
TCAACAGTTCAGAAGTATCTTCAGAGACCAAAATTCAAAGAGCTTCTTCT
AGAATCTAAAAAAGCAACACAAGACGATAATGTAATTAAAGATATTTACG
ATGGAAAAACATGGAAAAACTTTACAGATGAGGAAGGGGAATTATTTTTC
ACTGATAAGAGAAATCTAGGGTTGATGATGAATATTGACTGGTTCCAACC
TTTCACCAACTCAGATTACTCACTGGGTGTCATTTATATGGTACTGCTGA
ACCTACCACGTGAGGAGAGATTTAAATACGAAAATGTAATTGTTTGCGGG
ATTATTCCTGGCCCTAAGGAACCATCAAAAAATGTTAACACATTTTTAAA
ACCTATCGTGACTGACCTATTAAATGGCTGGAAAGGTGTGATGCTCAAGG
ATGGAATATATGGCAAAAGTTTGTACAAGTATGCACTAATAAGCCTATCC
AGTGACATCCCAGCTACACGTAAATGTTGTGGTTTTCTTGGATTCTCAGC
AAAGCTTGgttGTAGCAAATGTTTTAAGAAATTTCCAACAAAGAATTTTG
GAGATAAAACTGATTACTCCGGCTTCGATATTGAAAATTGGGATTTACGA
ACTGGAAAACAACACAAGGTAGCTGCTGGCTTGATAGAAAGGTGCAAAAC
CAAGACAGGGAAGgaaaagatggaaaaacagcttggAGTGAGATTTTCAC
AATTGTTTGATTTACCTTACTTTGATCCAATTGAGATGCACGTCATAGAC
CCAATGCATAATCTCCTGTTAGGAACTGGTAAATTATTGATAAAACTTTG
GCTGAAAACTGGAACTTTGACGGAACAGAAGCTGAAAACAATCGACAGGT
TGCAAAACCATATTAAAGTTCCAAGTGGTTACAGCAAGATGGCTAGACAT
ATATCAAAGTATTACAAGAGGTTCAAAGCAGAAGAATGCAAAACATTTCT
TCTGATTTACTCTTTGTACTGTTGCAAAAGGATTCTCGGACGTAAAAAGT
TAGCAAACTTAACAAAATATGTCAATGCATGTCGTTTGCTGTGTCGCAAG
TCAATTAAGAAGGAGGATATCAGTCGCGCTCATGAGTTGCTTCTAGATTT
TTGCAAAGGATTTCAAGAGTTATATGGTAAAGAAAATTGCACCCCGAATA
TGCATCTTCACTTGCACTTGAAAGaatgtttggaaaattttggtcCAGTT
TATGCCTTCTGGTGCTTCTCCTTTGAAAGGTATAACGGGACACTGGGTAA
TTTCCACACCAATAATTACAACATTGTATCAACTTTCATGAAAAAGATTG
TCTTGAGTCAAAATATATCGTCCATGGACCACAGTTTGTATGACTCATTT
TTGAAACCAAAGTCTGCTCCTCGACAAATACAAAGTcggaagaaaaagga
aaagtctTTTCTTGATGATCAACACAAACATATTGCCTCAGCCCTGTCAA
TGGAACAAGTAAACCTTTCAACGTTTTATAATGATTATGATCATGTCACA
TTTGATGGCATCAAGTATTCTTCCATCAAGCATAAAAATGGCGAGTCAGC
TGATAAATTCGTTATGGTACCAATACCGGACAAGAAAGAGCCTAACAACA
TCATTTTGCGTCCAGGAGAAATTTTGAATCTttataaaattcaaattgtt
aAACCAAGATGTGAATTTGATTATGTGGCTGAGTGTCGATGGTTTAAACC
GTATGATTATCAGGACGAGTTTGGGTTGGATTGTCCCTTGAAGGTTTGGA
ATTCAAATTATGAACACTGGAAGTTTTATACTTATGTGAGGCTTTCTGAT
ATAAAGACAAAGTTTATATGTATAAAAAAAAACTGCACCTTTAAAAGGAA
CGATTTAATTTATCGacggaaaaagaaaatttatgataCAGTACATTTTG
TATTAGATTTATAAGGTTTGggtaagttttttttgtttcagattTGACGT
GTcatttgaatcatttttttACTCATGTATTTGCATTGTCGAGGATAAAT
GATTGTGTAGTTCGCACACTTTCACTATTTGTCACTGATTTGCCCCTAAA
TTTTCTCAAAGGATTCAACAAATTTCT
Run BLAST on NCBI

transcript from alignment at sc0001217:33152..37710-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034774 ID=TCONS_00034774|Name=TCONS_00034774|organism=Clytia hemisphaerica|type=transcript|length=4559bp|location=Sequence derived from alignment at sc0001217:33152..37710- (Clytia hemisphaerica)
CAACAATGAGTGACATTGTCATAAGGTTCAAAAGTATTGTTATTTGTCAT
TTGCTTTAATGACAAACATTCGGTTGCTACCGATCAATCAATGATTACCT
TAATGAAGATTACTCGTAATTAAATCGGTAATCAACAGCATCAATTGACT
GTGTCTGGATTAATCGATCCTAAACTTAGTGGCAACTATGACTAGTTCAG
TCAGGATCGCCTGGAATATTTAATGATATTATGAAATAACTTGCCTTATA
TCATTATTTTGAGATTTTATTATATAATAAAGTGGGACATTAAAAAATGT
TTTGCTCTCGTCGCAGCACATTTTGATACATGCAGGCAGGCAGCAGGTGG
GCGGCAAAAAGTCAGGCTTTTCTAATCGGTATCCCCTCCCCGGGAATTTG
CTCCTTCTCTGCCATATAAAAATAATAATTTGAAGGAACATGTTAGGGGG
GTGAGGTCTCAATGCCTCTAGAAACTGCGCTAATTACATTATATGATATA
TAATTCATCAGAGAAAACACATTTCTTTCATCAATATTTGGGTGAATGCC
TTCTTCAATACTAAATTAGCATAATGTATTATTCATTATTCGTAATGTAT
GTCATTTCCTAAATAAAGGTCATTGTATGCCTTAATTTAAACTTAACATA
ATCTTTAATATTTCAACCTTTCCCTTTTATAGAAGCCGGTGATGCTGACT
CAAATGATGATTTCTCAAGTGATTCAGATAGTGATAGTGAATTGGATGAA
GTAAGTCTGGCTAGTATTCTATCTGTAGAAATGGTCTGTTTCTATTCTGA
ATTCTGCTGTGGTCTACATATTTCTTTCTTAGAACATGTTTATCCTCGAC
ATACTCATATTTCTTAAGAAATTATCCTATTCCTATTGAGCATGAATTTT
TCTTTTTTAATGTTTCTTTTCCGTAAAGAGGCTTACATTATTACATGAAA
ATAGCAAGTCATCTTATTAACACATTTGCTCTACTTAGTTTTACGTTAGG
TTTCAGGATGTTTGTAAATTTGACCTTTTTCGTGAAAGTTTGCTTTTTAA
ATTCTAAACAGGGGGTAATGCGCGCTTCTAAAAAAGTCTTAAAAATTAAA
TTTATGGTTTTCTCGTTTTAAATTTTATATATCGCCCTGTGAAGTTTCTT
GCCTAAAAATCTTTTGTTTTTTTATAGTAATCAGCAAAGCTAGTTTGTGT
ATCTCATTTCAGGTCGATCCATCAGATAGTGAGAATGATGAGGTCGCAGA
TCATTCTGTGGATGTTGAATGCCCTCGAGCAAAATGTTTGGCATTGGTTT
TGCGTGCAATCTTCCTTTTCCAAGTTCATGCTTTTATTTCCAATGCATCC
ATCGTAGTGCTTCTTGGGATGATCAGGGTGGTCATAAACTTAATTGCATC
GCTGGCTTGTTTCGATATTCTTTCTTCATTTGCAAAAGAATTTCCATCAA
CATTGTATTCCGCATACAAGAAGGCAGGCATAACAGTTGATGATTTCGAA
ACCTGGGTTGTTTGCCCTCAGTGTAATTCTTTATACAAATTCGACAATTG
TTTTGAAACTAGAAAAGGACATAGTAAAAAGACAGTGAAATCCTGTACCT
TCAAACCACCATTTACAAGAGCTGTTCAATGTAACACAAAATTATTGAAA
GTTCGATTTACAGCAGCTGGAAACACAACATATGTACCGAAGAAAATCTA
TTGTACAAGAAGAATTGATTCAACAGTTCAGAAGTATCTTCAGAGACCAA
AATTCAAAGAGCTTCTTCTAGAATCTAAAAAAGCAACACAAGACGATAAT
GTAATTAAAGATATTTACGATGGAAAAACATGGAAAAACTTTACAGATGA
GGAAGGGGAATTATTTTTCACTGATAAGAGAAATCTAGGGTTGATGATGA
ATATTGACTGGTTCCAACCTTTCACCAACTCAGATTACTCACTGGGTGTC
ATTTATATGGTACTGCTGAACCTACCACGTGAGGAGAGATTTAAATACGA
AAATGTAATTGTTTGCGGGATTATTCCTGGCCCTAAGGAACCATCAAAAA
ATGTTAACACATTTTTAAAACCTATCGTGACTGACCTATTAAATGGCTGG
AAAGGTGTGATGCTCAAGGATGGAATATATGGCAAAAGTTTGTACAAGTA
TGCACTAATAAGCCTATCCAGTGACATCCCAGCTACACGTAAATGTTGTG
GTTTTCTTGGATTCTCAGCAAAGCTTGGTAAATATATTTTGTTTTCCTCC
AGAGTTTTCTTTAAAGCTCTATGTAAGGTGTAAACAGCGATAAAATCAGT
CTCCTAAAATTACATGTTTTCACCATATACTTTAATCAGAAATTTTTGCG
AGAACAACTTTATCGCTAATTAGCAAATCACAAAAATTTTGATTTGGTGT
GGATTTATTTTAGTAAATCACGTTTTTTTTTAATTTAGCGTGGATTAATT
TTAACGAAAAGAAGAAAATGTAGTGTAGACTGAATCATGTAACATTTTTG
ATATTTAAGTTTTTTTTCAATTTTTCAGGTTGTAGCAAATGTTTTAAGAA
ATTTCCAACAAAGAATTTTGGAGATAAAACTGATTACTCCGGCTTCGATA
TTGAAAATTGGGATTTACGAACTGGAAAACAACACAAGGTAGCTGCTGGC
TTGATAGAAAGGTGCAAAACCAAGACAGGGAAGGAAAAGATGGAAAAACA
GCTTGGAGTGAGATTTTCACAATTGTTTGATTTACCTTACTTTGATCCAA
TTGAGATGCACGTCATAGACCCAATGCATAATCTCCTGTTAGGTAAGATT
TTTTACTTAATGCCTTCAATTCGACACATGGTTTTAGGTTACAATTCGTT
CCCTGGGTGGAGTATTGAAATTCAAATCTCAGGCTAAAGGCTTATTTATT
ATTGTGACTCACTGAAGGAATATTGCTACGTACTGTTTACACCCTAAAGA
TTCCTTAGATTTGCAAGGCTAATTTTTTAACTTGTCAAAGGGCTTGATCC
TTTATAACAATTTGGTTGCTTGCAAAGAATGTATATTAAGCATAGGTTTT
ACCGAGAAAATATTTTTTGAAGTTTTGATTTTAAAGAGTGAATCGTCTAA
AATTTCCCATATTTGCTACATTTTTTTTTTCTCAATCTCTATTTCAAAAC
ACCTCTCCCAACTGAGATATTCCAGGTTATGGACCTAGATTAAAATTCTT
TCCAAATTGTACCAAAATTACAGAATAAGCCTAAAGTTTCTTCTCTATTT
TAAGGAACTGGTAAATTATTGATAAAACTTTGGCTGAAAACTGGAACTTT
GACGGAACAGAAGCTGAAAACAATCGACAGGTTGCAAAACCATATTAAAG
TTCCAAGTGGTTACAGCAAGATGGCTAGACATATATCAAAGTATTACAAG
AGGTTCAAAGCAGAAGAATGCAAAACATTTCTTCTGATTTACTCTTTGTA
CTGTTGCAAAAGGATTCTCGGACGTAAAAAGTTAGCAAACTTAACAAAAT
ATGTCAATGCATGTCGTTTGCTGTGTCGCAAGTCAATTAAGAAGGAGGAT
ATCAGTCGCGCTCATGAGTTGCTTCTAGATTTTTGCAAAGGATTTCAAGA
GTTATATGGTAAAGAAAATTGCACCCCGAATATGCATCTTCACTTGCACT
TGAAAGAATGTTTGGAAAATTTTGGTCCAGTTTATGCCTTCTGGTGCTTC
TCCTTTGAAAGGTATAACGGGACACTGGGTAATTTCCACACCAATAATTA
CAACATTGTATCAACTTTCATGAAAAAGATTGTCTTGAGTCAAAATATAT
CGTCCATGGACCACAGTTTGTATGACTCATTTTTGAAACCAAAGTCTGCT
CCTCGACAAATACAAAGTCGGAAGAAAAAGGAAAAGTCTTTTCTTGATGA
TCAACACAAACATATTGCCTCAGCCCTGTCAATGGAACAAGTAAACCTTT
CAACGTTTTATAATGATTATGATCATGTCACATTTGATGGCATCAAGTAT
TCTTCCATCAAGCATAAAAATGGCGAGTCAGCTGATAAATTCGTTATGGT
ACCAATACCGGACAAGAAAGAGCCTAACAACATCATTTTGCGTCCAGGAG
AAATTTTGAATCTTTATAAAATTCAAATTGTTAAACCAAGATGTGAATTT
GATTATGTGGCTGAGTGTCGATGGTTTAAACCGTATGATTATCAGGACGA
GTTTGGGTTGGATTGTCCCTTGAAGGTTTGGAATTCAAATTATGAACACT
GGAAGTTTTATACTTATGTGAGGCTTTCTGATATAAAGACAAAGTTTATA
TGTATAAAAAAAAACTGCACCTTTAAAAGGAACGATTTAATTTATCGACG
GAAAAAGAAAATTTATGATACAGTACATTTTGTATTAGATTTATAAGGTT
TGGGTAAGTTTTTTTTGTTTCAGATTTGACGTGTCATTTGAATCATTTTT
TTACTCATGTATTTGCATTGTCGAGGATAAATGATTGTGTAGTTCGCACA
CTTTCACTATTTGTCACTGATTTGCCCCTAAATTTTCTCAAAGGATTCAA
CAAATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020219XLOC_020219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034774-exon-sc0001217-1575043694:37686..37710TCONS_00034774-exon-sc0001217-1575043694:37686..37710Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1575043694:36961..37028TCONS_00034774-exon-sc0001217-1575043694:36961..37028Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1575043694:35484..36498TCONS_00034774-exon-sc0001217-1575043694:35484..36498Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1575043694:34919..35182TCONS_00034774-exon-sc0001217-1575043694:34919..35182Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1575043694:33152..34456TCONS_00034774-exon-sc0001217-1575043694:33152..34456Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1510915933:37686..37710TCONS_00034774-exon-sc0001217-1510915933:37686..37710Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1510915933:36961..37028TCONS_00034774-exon-sc0001217-1510915933:36961..37028Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1510915933:35484..36498TCONS_00034774-exon-sc0001217-1510915933:35484..36498Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1510915933:34919..35182TCONS_00034774-exon-sc0001217-1510915933:34919..35182Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1510915933:33152..34456TCONS_00034774-exon-sc0001217-1510915933:33152..34456Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1491911889:37686..37710TCONS_00034774-exon-sc0001217-1491911889:37686..37710Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1491911889:36961..37028TCONS_00034774-exon-sc0001217-1491911889:36961..37028Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1491911889:35484..36498TCONS_00034774-exon-sc0001217-1491911889:35484..36498Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1491911889:34919..35182TCONS_00034774-exon-sc0001217-1491911889:34919..35182Clytia hemisphaericaexon
TCONS_00034774-exon-sc0001217-1491911889:33152..34456TCONS_00034774-exon-sc0001217-1491911889:33152..34456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001217supercontigsc0001217:33152..37710 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115001	0.168216	0.0325524	0.0318475	21.7809	16.6638	6.34427	6.90087	2.26669	3.76123	2.82897	2.00816	1.11761	1.08312	0.228554	0.245274	0.0863307	0.132729	0	0.0959431	0.041696	0	0.131858	0.049032	1.09206	1.41686	0	0	0.0159552	0.0487676
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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