TCONS_00034770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034770
Unique NameTCONS_00034770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034770 ID=TCONS_00034770|Name=TCONS_00034770|organism=Clytia hemisphaerica|type=transcript|length=276bp
GTTTCCTTTGGTCCTCAATTTGTTCGTCGATTTTTTCCTCTCGTAGTAGC
TGTTTCATGCTATTTACGCTTAATTGATCATTGTGTTTAGTCGCTTCAGC
AAAACTTTTCTTACGTGGTTCTGTTGCGGTTTGAATTTTTGCAGTCTTGT
TATTCAACGTATCTTCTATCTTGGATGTTAGTTTTGTTTCTAGCGTGGAA
AACTGGCTCTGTATTAGATTGGTAACTTGATTTTTATCCTTAATGTATTc
ctgatatctggcctgtaaaTCTTTGA
Run BLAST on NCBI

transcript from alignment at sc0001216:50925..51200

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034770 ID=TCONS_00034770|Name=TCONS_00034770|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0001216:50925..51200 (Clytia hemisphaerica)
TCAAAGAtttacaggccagatatcaggAATACATTAAGGATAAAAATCAA
GTTACCAATCTAATACAGAGCCAGTTTTCCACGCTAGAAACAAAACTAAC
ATCCAAGATAGAAGATACGTTGAATAACAAGACTGCAAAAATTCAAACCG
CAACAGAACCACGTAAGAAAAGTTTTGCTGAAGCGACTAAACACAATGAT
CAATTAAGCGTAAATAGCATGAAACAGCTACTACGAGAGGAAAAAATCGA
CGAACAAATTGAGGACCAAAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020215XLOC_020215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034770-exon-sc0001216-1491911889:50925..51200TCONS_00034770-exon-sc0001216-1491911889:50925..51200Clytia hemisphaericaexon
TCONS_00034770-exon-sc0001216-1510915933:50925..51200TCONS_00034770-exon-sc0001216-1510915933:50925..51200Clytia hemisphaericaexon
TCONS_00034770-exon-sc0001216-1575043694:50925..51200TCONS_00034770-exon-sc0001216-1575043694:50925..51200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001216supercontigsc0001216:50925..51200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04286	2.54238	4.13272	4.04322	7.73494	1.66698	2.01114	2.5104	2.19699	1.6328	0.528278	1.38908	5.54858	2.16084	1.18434	2.22421	1.1743	0	3.88003	1.74008	2.52074	0.737716	0.59786	1.63063	3.91885	1.99856	2.85993	2.28915	0.578746	2.3586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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