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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034757 ID=TCONS_00034757|Name=TCONS_00034757|organism=Clytia hemisphaerica|type=transcript|length=4777bpRun BLAST on NCBI protein sequence of TCONS_00034757-protein >TCONS_00034757-protein ID=TCONS_00034757-protein|Name=TCONS_00034757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp MKRSKKMLSRFTSMLSNAVEAFAPEMTLLEQFRYHWKCVTQFFLDTEDERRun BLAST on NCBI transcript from alignment at sc0001215:21788..36801+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034757 ID=TCONS_00034757|Name=TCONS_00034757|organism=Clytia hemisphaerica|type=transcript|length=15014bp|location=Sequence derived from alignment at sc0001215:21788..36801+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001215:21788..36801+ >TCONS_00034757 ID=TCONS_00034757|Name=TCONS_00034757|organism=Clytia hemisphaerica|type=CDS|length=29862bp|location=Sequence derived from alignment at sc0001215:21788..36801+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00034757 vs. Swiss-Prot (Human)
Match: F16B2 (Protein FAM160B2 OS=Homo sapiens GN=FAM160B2 PE=2 SV=2) HSP 1 Score: 290.812 bits (743), Expect = 9.120e-83 Identity = 178/485 (36.70%), Postives = 267/485 (55.05%), Query Frame = 1
Query: 217 MLSRFTSMLSNAVEAFAPEMTLLEQFRYHWKCVTQFFLDTEDERIAVENTTIPNHLEQMIEVLKIEEHENGISS-AGPAMEFMLQHKILETMQTLGKADCPPGMKRYVLIFFTXXXXXXXXXXXPHVNVHKPINKLIRCCGNVKAGPTETEEVQFLLQVSSKLKQDSYLVSFFLE------------KPTSTEQXXXXXXXXXXXXXXDREKP----------------------------EYSLVDSLLVLTKSEDSRVAIKACEGLLLVTSILEDTAASVIVLYTAFCERMADQLSKLFRCLPQVLDPADINQ-SNATWGFDHDDQYGTDFLGKRQLTAFLSWLDYVNQLSIEAHPMVSKSLAQAIRERFILTAIDSGLSQASEPCAITVTALLTRCLKLVSSPTLAQEFAIILLGNEMSPEIPDHQSPHKLRRLLIQRINHLSDQLAVETLRLFQGLLKLAYQPIIDTLVVRNFQTRNYLDF 1545
MLSR ++L AV A P + LL+ F HWK +T +++++ DE + T IP L+QM+++L EE + + AGP +E++LQHKILET+ TLGKA+ PPGM++ V FF+K+L +++ LL +++VH+P+ KL+R G TE EEVQF + SK++QD L+++ LE +PT+ + + S +P E +L+ SLL L +S+ SRVA+KA E LLL+ S+ AA+ +V +A C + L +L+R +P LDPADI +W F GK L AFL W DY + L EAH +V+ +LA+A+ E F + + L SE +T TALLT L+ + SP L +E LLG + PE P +PH L LI +HLSD++++ TLRLF+ LL+ ++ II +LV+RN + R Y+ +
Sbjct: 1 MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDESTPAKKTDIPWRLKQMLDILVYEEQQQAAAGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTASGSVTEKEEVQFTTVLCSKIQQDPELLAYILEGKKIVGRKKACGEPTALPKDTTSHGDKDCSHDGAPARPQLDGESCGAQALNSHMPAETEELDGGTTESNLITSLLGLCQSKKSRVALKAQENLLLLVSMASPAAATYLVQSSACCPAIVRHLCQLYRSMPVFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAENFFVETLQPQLLHVSEQSILTSTALLTAMLRQLRSPALLREAVAFLLGTDRQPEAPG-DNPHTLYAHLIGHCDHLSDEISITTLRLFEELLQKPHEGIIHSLVLRNLEGRPYVAW 484 HSP 2 Score: 132.494 bits (332), Expect = 3.539e-31 Identity = 74/187 (39.57%), Postives = 106/187 (56.68%), Query Frame = 3
Query: 2211 KLFRCLPQVLDPADINQ-SNATWGFDHDDQYGTDFLGKRQLTAFLSWLDYVNQLSIEAHPMVSKSLAQAIRERFILTAIDSGLSQASEPCAITVTALLTRCLKLVSSPTLAQEFAIILLGNEMSPEIPDHQSPHKLRRLLIQRINHLSDQLAVETLRLFQGLLKLAYQPIIDTLVVRNFQTRNYLDF 2768
+L+R +P LDPADI +W F GK L AFL W DY + L EAH +V+ +LA+A+ E F + + L SE +T TALLT L+ + SP L +E LLG + PE P +PH L LI +HLSD++++ TLRLF+ LL+ ++ II +LV+RN + R Y+ +
Sbjct: 299 QLYRSMPVFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAENFFVETLQPQLLHVSEQSILTSTALLTAMLRQLRSPALLREAVAFLLGTDRQPEAPG-DNPHTLYAHLIGHCDHLSDEISITTLRLFEELLQKPHEGIIHSLVLRNLEGRPYVAW 484 HSP 3 Score: 103.605 bits (257), Expect = 3.233e-22 Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 3
Query: 3471 NKRKVEKAVNGFLLLLPEALRTSGGSTTETGYDSYLREAHRQCDQRSKQTRLYDWPTALKEAITDDEKEEEAFYEGAFLNTIFRRLERMLDQPYEINLEVTGILSLLCQFRHPFLHEFLVDTSGVVXLTVSIPP------SILTRVFG 3896
K V + VN FL L+PE +TS ETGYD+Y+ +A+ + S + + WP L D + E F+EG FL +F R+ R+LDQPY +NL+VT +LS L F HP +HE+L+D +S+ P S+L RV G
Sbjct: 529 GKTAVTEIVNSFLCLVPEEAKTSA-FLEETGYDTYVHDAYGLFQECSSRVASWGWP--LTPTPLDPHEPERPFFEGHFLRVLFDRMSRILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDP------YISLAPGCRSLFSVLVRVIG 667 The following BLAST results are available for this feature:
BLAST of TCONS_00034757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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