TCONS_00034716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034716
Unique NameTCONS_00034716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034716 ID=TCONS_00034716|Name=TCONS_00034716|organism=Clytia hemisphaerica|type=transcript|length=460bp
aaaaatatcaaaaatatcaaaacacaaaaaaaccttttttgatgATTACA
TTGCATGTATATTGGAGATAATGGTGTTGTAGCATTACCAATTGATAAAC
TTATATTCTTATACGAGCGCATGAAATTTTCGCACCCGCTTTCTGGAATT
CCGTGTAACAGATTTGGCCCCGGATACCAATTCTCACCTTCATCATATTC
AAACTGTGTCCGAATAACGAAgaacctaagaaataaagtggggaaaaaca
ctcaacatatgatgcaaaatgaacttaaaaagaaagacgacgtcatacaa
aaactgaacaacgaggtcaacaccaacaccaaaacccgtgattccatcaa
aaatgatctcaaaatttttctggCAGAAAAACtacaagaaatggaagaaa
agacAAGAACCATGATAAAGGAAGAAATCAAGCACACAACAGAAATAATG
ACGGAGACAT
Run BLAST on NCBI

protein sequence of TCONS_00034716-protein

>TCONS_00034716-protein ID=TCONS_00034716-protein|Name=TCONS_00034716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MYIGDNGVVALPIDKLIFLYERMKFSHPLSGIPCNRFGPGYQFSPSSYSN
CVRITKNLRNKVGKNTQHMMQNELKKKDDVIQKLNNEVNTNTKTRDSIKN
DLKIFLAEKLQEMEEKTRTMIKEEIKHTTEIMTET
Run BLAST on NCBI

transcript from alignment at sc0001210:63152..63611

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034716 ID=TCONS_00034716|Name=TCONS_00034716|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0001210:63152..63611 (Clytia hemisphaerica)
ATGTCTCCGTCATTATTTCTGTTGTGTGCTTGATTTCTTCCTTTATCATG
GTTCTTgtcttttcttccatttcttgtaGTTTTTCTGccagaaaaatttt
gagatcatttttgatggaatcacgggttttggtgttggtgttgacctcgt
tgttcagtttttgtatgacgtcgtctttctttttaagttcattttgcatc
atatgttgagtgtttttccccactttatttcttaggttcTTCGTTATTCG
GACACAGTTTGAATATGATGAAGGTGAGAATTGGTATCCGGGGCCAAATC
TGTTACACGGAATTCCAGAAAGCGGGTGCGAAAATTTCATGCGCTCGTAT
AAGAATATAAGTTTATCAATTGGTAATGCTACAACACCATTATCTCCAAT
ATACATGCAATGTAATcatcaaaaaaggtttttttgtgttttgatatttt
tgatattttt

Coding sequence (CDS) from alignment at sc0001210:63152..63611

>TCONS_00034716 ID=TCONS_00034716|Name=TCONS_00034716|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0001210:63152..63611 (Clytia hemisphaerica)
TGTCTCCGTCATTATTTCTGTTGTGTGCTTGATTTCTTCCTTTATCATGG
TTCTTgtcttttcttccatttcttgtaGTTTTTCTGccagaaaaattttg
agatcatttttgatggaatcacgggttttggtgttggtgttgacctcgtt
gttcagtttttgtatgacgtcgtctttctttttaagttcattttgcatca
tatgttgagtgtttttccccactttatttcttaggttcTTCGTTATTCGG
ACACAGTTTGAATATGATGAAGGTGAGAATTGGTATCCGGGGCCAAATCT
GTTACACGGAATTCCAGAAAGCGGGTGCGAAAATTTCATGCGCTCGTATA
AGAATATAAGTTTATCAATTGGTAATGCTACAACACCATTATCTCCAATA
TACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020179XLOC_020179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034716-proteinTCONS_00034716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034716-exon-sc0001210-1491911889:63152..63611TCONS_00034716-exon-sc0001210-1491911889:63152..63611Clytia hemisphaericaexon
TCONS_00034716-exon-sc0001210-1510915933:63152..63611TCONS_00034716-exon-sc0001210-1510915933:63152..63611Clytia hemisphaericaexon
TCONS_00034716-exon-sc0001210-1575043694:63152..63611TCONS_00034716-exon-sc0001210-1575043694:63152..63611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001210supercontigsc0001210:63152..63611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.49132	6.06471	12.8031	10.9601	9.91185	6.1756	8.90438	7.65567	4.76437	3.83594	11.1698	4.70677	12.6906	9.66484	4.8959	3.18688	3.39544	3.80649	3.75634	4.55965	6.14974	6.99913	4.0516	4.42019	8.65012	9.75161	14.3422	11.9969	5.80466	9.75015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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