TCONS_00034706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034706
Unique NameTCONS_00034706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034706 ID=TCONS_00034706|Name=TCONS_00034706|organism=Clytia hemisphaerica|type=transcript|length=522bp
GCTACATCAGTTACCAATTTTTTCAACCATTTGTGAAAATCAGGAACATT
TAAATAACGTAATGGAGAACGCTTGATATTCTCGAAACATTTGAAAGCAC
GGTTCTGTTCATAGTTAAACGGGTTAATTGTTTGGATATCTTTAATCATT
TCTCTCTCATCTTCAAGTGTGTGACTATGGGTGTGCTGAACTGATCTCGG
TGTCATATCAgttttctcatcaaaattttgaattatagCCTTGATGCCAT
TAGTAGCTCTGgacattttttatattgactGAACTGTTTTATTTGCACCC
ATTCTCTTAGCTATGTCTTTCGAAAGTCTATTCGATATCTCCTGGACCAT
ATCATCTTCTATGTTTCTTCCTTTACCTCCACGCCAATGAGAAAAATACC
CCCATTTAAATTCTTGAGATAGCCTTGGGGTTAAAAGACACTCTGTATAC
AGCAAGGCATAAAACATCTCTTGGGCATATTTGCTGTAGGAATCTGTAGA
CTTGAAAGCAGATATCAAAATC
Run BLAST on NCBI

transcript from alignment at sc0001209:22444..22965

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034706 ID=TCONS_00034706|Name=TCONS_00034706|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0001209:22444..22965 (Clytia hemisphaerica)
GATTTTGATATCTGCTTTCAAGTCTACAGATTCCTACAGCAAATATGCCC
AAGAGATGTTTTATGCCTTGCTGTATACAGAGTGTCTTTTAACCCCAAGG
CTATCTCAAGAATTTAAATGGGGGTATTTTTCTCATTGGCGTGGAGGTAA
AGGAAGAAACATAGAAGATGATATGGTCCAGGAGATATCGAATAGACTTT
CGAAAGACATAGCTAAGAGAATGGGTGCAAATAAAACAGTTCagtcaata
taaaaaatgtcCAGAGCTACTAATGGCATCAAGGctataattcaaaattt
tgatgagaaaacTGATATGACACCGAGATCAGTTCAGCACACCCATAGTC
ACACACTTGAAGATGAGAGAGAAATGATTAAAGATATCCAAACAATTAAC
CCGTTTAACTATGAACAGAACCGTGCTTTCAAATGTTTCGAGAATATCAA
GCGTTCTCCATTACGTTATTTAAATGTTCCTGATTTTCACAAATGGTTGA
AAAAATTGGTAACTGATGTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020169XLOC_020169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034706-exon-sc0001209-1491911889:22444..22965TCONS_00034706-exon-sc0001209-1491911889:22444..22965Clytia hemisphaericaexon
TCONS_00034706-exon-sc0001209-1510915933:22444..22965TCONS_00034706-exon-sc0001209-1510915933:22444..22965Clytia hemisphaericaexon
TCONS_00034706-exon-sc0001209-1575043694:22444..22965TCONS_00034706-exon-sc0001209-1575043694:22444..22965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001209supercontigsc0001209:22444..22965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.221063	0.128338	0	0	0	0.177724	0.156686	0.493337	0.876531	0	0.176893	1.05665	0.391434	0	0	0.00215167	0.378993	0	0.75665	0.219181	0.300969	0.601211	0.814078	0.620437	0.13735	0.34431	0.597871	1.18402	1.80552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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