TCONS_00034693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034693
Unique NameTCONS_00034693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034693 ID=TCONS_00034693|Name=TCONS_00034693|organism=Clytia hemisphaerica|type=transcript|length=508bp
CCTTATGCCCAAGATTGCTGCTGTCGGTTCGCCTTCGGTTGCGAAAGAAT
TTGTGAGATCGTTTAAGTAGATGGCGACGTAAAGTGGATCCGCAGGACAA
CTGTTTATTTCGGGTCAGCCCAAGATACCCATTTCTCCCATGCTGGCTTG
TAATTTCTCAAAGTAGATTTTGCGTAAGCTGCTTCTAATAGGGTAGGTAG
ACTTTCGGCTTTCCGTTTGAgccaataaataaataaaaaaattcttaatt
gcAAACTCGAAGCGTAATTATTTGTCGGAAAATTTAAAGTGCAATAAATT
AAGTCAAGAATTATGTTACCTCTACGTCTGCGAACTTGAATTCAAGGTGG
TAATCAATCATCAACTGGAGAACGATTGCTCCTTCGAGTGCGTTGCACAG
GGGCAACAAAACATGGTCGTTGGTCATTGAACACCAGCAGAAAAACACGT
ATATCAAAGACAATGCcgaaaaacgttttaaaatttCCCGTTCTTTAGGG
TTTTAGGC
Run BLAST on NCBI

transcript from alignment at sc0001206:50239..50746

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034693 ID=TCONS_00034693|Name=TCONS_00034693|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0001206:50239..50746 (Clytia hemisphaerica)
GCCTAAAACCCTAAAGAACGGGaaattttaaaacgtttttcgGCATTGTC
TTTGATATACGTGTTTTTCTGCTGGTGTTCAATGACCAACGACCATGTTT
TGTTGCCCCTGTGCAACGCACTCGAAGGAGCAATCGTTCTCCAGTTGATG
ATTGATTACCACCTTGAATTCAAGTTCGCAGACGTAGAGGTAACATAATT
CTTGACTTAATTTATTGCACTTTAAATTTTCCGACAAATAATTACGCTTC
GAGTTTgcaattaagaatttttttatttatttattggcTCAAACGGAAAG
CCGAAAGTCTACCTACCCTATTAGAAGCAGCTTACGCAAAATCTACTTTG
AGAAATTACAAGCCAGCATGGGAGAAATGGGTATCTTGGGCTGACCCGAA
ATAAACAGTTGTCCTGCGGATCCACTTTACGTCGCCATCTACTTAAACGA
TCTCACAAATTCTTTCGCAACCGAAGGCGAACCGACAGCAGCAATCTTGG
GCATAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020157XLOC_020157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034693-exon-sc0001206-1491911889:50239..50746TCONS_00034693-exon-sc0001206-1491911889:50239..50746Clytia hemisphaericaexon
TCONS_00034693-exon-sc0001206-1510915933:50239..50746TCONS_00034693-exon-sc0001206-1510915933:50239..50746Clytia hemisphaericaexon
TCONS_00034693-exon-sc0001206-1575043694:50239..50746TCONS_00034693-exon-sc0001206-1575043694:50239..50746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001206supercontigsc0001206:50239..50746 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6164	12.4488	5.49405	2.41814	0.960075	0.968488	3.41938	2.10309	3.35606	2.17224	4.90227	3.52287	11.8658	12.7945	11.6124	11.3978	3.92413	4.63447	9.07564	5.44273	4.329	2.28173	7.86002	11.1674	0	6.21392	3.02966	2.69015	6.49911	4.17888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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