TCONS_00034691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034691
Unique NameTCONS_00034691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034691 ID=TCONS_00034691|Name=TCONS_00034691|organism=Clytia hemisphaerica|type=transcript|length=341bp
CTGGTGATGCTATCTTACAGCAGCAAAGTTCAGATATTCTAGACCCTTCG
ACTTTTCAGGATTTAGCAGTAAAAATATTAACCTGTGGTACTTTTTCTTC
CatcaaaaaattattcttttcaACCAAAGAATCTGTAATATTGAAAACTC
TGAAACCAGATAGTTTTGGTCTCCAAAGCTTAGCTGTTTTGAGTCATGAA
CATCGTCTCTTGAAATTCGTTGGAACTCACTCAAATATAGTTTCAACACT
TGGTTTGACAAATTCAAATGGGTCGTTCTCTCATGTTATGAGTTTTGAGA
TTGGTATGACTTTGTTTGAAATGACACAAAAATCTATTTCT
Run BLAST on NCBI

protein sequence of TCONS_00034691-protein

>TCONS_00034691-protein ID=TCONS_00034691-protein|Name=TCONS_00034691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
GDAILQQQSSDILDPSTFQDLAVKILTCGTFSSIKKLFFSTKESVILKTL
KPDSFGLQSLAVLSHEHRLLKFVGTHSNIVSTLGLTNSNGSFSHVMSFEI
GMTLFEMTQKSIS
Run BLAST on NCBI

transcript from alignment at sc0001206:19895..20235

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034691 ID=TCONS_00034691|Name=TCONS_00034691|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0001206:19895..20235 (Clytia hemisphaerica)
AGAAATAGATTTTTGTGTCATTTCAAACAAAGTCATACCAATCTCAAAAC
TCATAACATGAGAGAACGACCCATTTGAATTTGTCAAACCAAGTGTTGAA
ACTATATTTGAGTGAGTTCCAACGAATTTCAAGAGACGATGTTCATGACT
CAAAACAGCTAAGCTTTGGAGACCAAAACTATCTGGTTTCAGAGTTTTCA
ATATTACAGATTCTTTGGTtgaaaagaataattttttgatGGAAGAAAAA
GTACCACAGGTTAATATTTTTACTGCTAAATCCTGAAAAGTCGAAGGGTC
TAGAATATCTGAACTTTGCTGCTGTAAGATAGCATCACCAG

Coding sequence (CDS) from alignment at sc0001206:19895..20235

>TCONS_00034691 ID=TCONS_00034691|Name=TCONS_00034691|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001206:19895..20235 (Clytia hemisphaerica)
AGAAATAGATTTTTGTGTCATTTCAAACAAAGTCATACCAATCTCAAAAC
TCATAACATGAGAGAACGACCCATTTGAATTTGTCAAACCAAGTGTTGAA
ACTATATTTGAGTGAGTTCCAACGAATTTCAAGAGACGATGTTCATGACT
CAAAACAGCTAAGCTTTGGAGACCAAAACTATCTGGTTTCAGAGTTTTCA
ATATTACAGATTCTTTGGTtgaaaagaataattttttgatGGAAGAAAAA
GTACCACAGGTTAATATTTTTACTGCTAAATCCTGAAAAGTCGAAGGGTC
TAGAATATCTGAACTTTGCTGCTGTAAGATAGCATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020155XLOC_020155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034691-exon-sc0001206-1491911889:19895..20235TCONS_00034691-exon-sc0001206-1491911889:19895..20235Clytia hemisphaericaexon
TCONS_00034691-exon-sc0001206-1510915933:19895..20235TCONS_00034691-exon-sc0001206-1510915933:19895..20235Clytia hemisphaericaexon
TCONS_00034691-exon-sc0001206-1575043694:19895..20235TCONS_00034691-exon-sc0001206-1575043694:19895..20235Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034691-proteinTCONS_00034691-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001206supercontigsc0001206:19895..20235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.71185	4.00978	3.10991	5.49942	1.13243	0.28054	0.544598	0.357998	1.43	0.185634	1.37354	4.09451	2.01764	0.827206	0	0.298972	0.519723	0	0.308165	1.96117	0.865697	7.98367	0.368536	0	8.35276	8.20621
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top