TCONS_00034684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034684
Unique NameTCONS_00034684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034684 ID=TCONS_00034684|Name=TCONS_00034684|organism=Clytia hemisphaerica|type=transcript|length=263bp
GGGTCTCATTATCTCGCGTTTGGGCTTCTTTGTactttattcttttttat
tgtCTATCTTTATTGATTCCTTAGCGTCTTTATTGGTTATGCCATCTCTT
GGGATATTAAAGTTTTTTCTGTAGTGTTTTGACAACATTTCTGATTTtat
tatgaaattattttttgtaaagTAGCTACTGTCTGTGCATGTGAACTGAC
GTGTTGGGTGGTACCGTCTAGTGGTTTTTAGACAGTGATTTTagtaagta
ttttttttatttt
Run BLAST on NCBI

transcript from alignment at sc0001204:28327..28589

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034684 ID=TCONS_00034684|Name=TCONS_00034684|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0001204:28327..28589 (Clytia hemisphaerica)
aaaataaaaaaaatacttactAAAATCACTGTCTAAAAACCACTAGACGG
TACCACCCAACACGTCAGTTCACATGCACAGACAGTAGCTActttacaaa
aaataatttcataataAAATCAGAAATGTTGTCAAAACACTACAGAAAAA
ACTTTAATATCCCAAGAGATGGCATAACCAATAAAGACGCTAAGGAATCA
ATAAAGATAGacaataaaaaagaataaagtACAAAGAAGCCCAAACGCGA
GATAATGAGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020148XLOC_020148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034684-exon-sc0001204-1491911889:28327..28589TCONS_00034684-exon-sc0001204-1491911889:28327..28589Clytia hemisphaericaexon
TCONS_00034684-exon-sc0001204-1510915933:28327..28589TCONS_00034684-exon-sc0001204-1510915933:28327..28589Clytia hemisphaericaexon
TCONS_00034684-exon-sc0001204-1575043694:28327..28589TCONS_00034684-exon-sc0001204-1575043694:28327..28589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001204supercontigsc0001204:28327..28589 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25508	0	1.42107	4.86603	1.69255	0	0	1.51064	1.58645	4.58518	0.635784	2.50764	0	1.73372	1.06902	1.52962	0.471093	0.965711	0.667091	0.698062	3.03371	2.66353	1.43905	1.30831	0	2.40527	1.72097	1.83666	2.08957	1.41929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top