TCONS_00034683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034683
Unique NameTCONS_00034683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034683 ID=TCONS_00034683|Name=TCONS_00034683|organism=Clytia hemisphaerica|type=transcript|length=2413bp
tttgtTGATAAACTAACAGtcgaaaaacaaaatcatttgaaaTATATCCG
CTCTAATataaaacattgaaaagatttATGTTGAAAGAAATTGTCATGGA
TAATAATccatataattatttttataaagataaaatcttaaaataacaaa
agagcaataaaataaataaatagtcCGGATTAACTTCCTCAAGTGCTGAG
CGTTTTTGTTGATCACAACAAattcttattcttaaaaattcgAAACCTAA
TTGATTCTACGTCGGAAGCATGTTTGTGCAAAAATTAAACAATCATAATT
ACatcatgaaaagaaaaatgttattaaaaacgaaaaaaattctatctaaa
atattaaatgtAAAACAAATATAATTACAATTAAATGTACAAAGAATTAA
AACccctttaaaaattgaaatcaataaGAATCAAAACATCTAGATTGAGT
TACAATATTGACAAAGAAGCATATGCAATACCATTTTCtcatataaaatc
aaaaaatactgTACGAAAGATGAAGAATTTAAATAACAGTATTATAGTAC
AAAAATATACTTTACATTTAATTGTAAGAACCTAAGTTAATTGTATTTTA
AATCccaatgatttttaaaatgaatgaaattttcagtattGATGTATATA
AATCAGTTTATTTGATTACCAAAATTGTATCTTTTGGCAGACTTACCAGA
AATCCAGCAAAAAAACCAAGATTTATTTTTCTACCAACACAGACCaacac
caaattaaattctcaccAAATCAGATTTCATTTAGTTTTTGAACTTTTCC
AActcattattttcaatttttatttctgccaaaaattcttgtattgtatt
ttttttcttaagaaaaattcttttccccAATTGCAAATCACTTTGATAAA
TTTTCACATAATTTCAGTTATCTCCTAgaagttttttgccaaaattaaga
tctcaaatttttcacaaaaaagtaatttttcatgAAGATGcccaaaattt
gtgaaaattgcaaaaattaattcacCTAAAACTTAACTGACTTTGGTAGC
ATGCCCtgatattgatttttaagcaaatCATTCTCTATTCTTTCTTTCTA
GAAGTCCTAATTCTTTGATCTTTTTGTATTGGTCTGGTATTTCCATTAAA
GCGTGAAGCGCAAATGTCAATTCCGGAGACTTGGTTGACTTTTTTGTACA
TTCACTGTAATCAACAaattgaaaattgtcaaaaagtcGAGATGGCAGTT
TCTCATCATAAGTCACCATATTCTCCCAAGGGCCATCTCCCACCCCAACA
ACAATAATTGAAAGAGGATAGTACGATGCTCTAATAATGGCTTGCTTTGT
GATATAATCTGCTTCTTCTTCAACCTGTCCGTCAGCAACAATAATCAAAA
TATGATATCCTTCGCACTTTTTTGTAATTGCAACAGCTTTCTCAATTATT
GGAACAAAGCTGGTTGGGCCACTGAGTTCCACCATTTTTACAACATTTTC
ATAGCATTCTAAAACATGTAAAAAACCTTTACAAGGTGATTCATCAGGTG
TGAAACTGAAAACAGCTTTATCTTTTGTGGTAACATCCCCAAAACCATAT
GCTGGAATCAGATTATCATCGTCAAATACACTTAATGTTGATGCTATAGA
TGTGATGACTTTTTGATATGGATTCTTTTTACTTTTGGATATTGTGTGAA
GTGATTTACGATCAAATGAATTCCTCCCTTGCCACTCATTTGAAGCTGTG
AAATCTACACCAACTATTATGTTGCTTGAATCCAAACCAGCAGCTTTGAT
GGCTTCTGATAACTCTGAGAAATCTAAAAATCTGTCACTAATAGCATCAA
TATGGGGAACGTCATGCTCTTCCAAATCTAATACCTTCAAGGTAGCTTGA
AACAGACTGCTTGATCTGAATTTTTCAGAACATTTGTCAGCCAATTGCTT
TGCTTTGCTTTCTTGTGAGCGAAGGAATGAAAAATGATGAAAAAGTTTGT
CCCAAAATATGTTATCTCGAAAAAGAAGTCGATAAGATATCAATAAGATG
AATATCAAAAAGAGGAATGTCAACGATTGCAAGTCCATGTTTTCGCTAAA
CTTCTGGATTTTAGCAGCTGTTTATTGTTGCTTGTTGGTTGTTTCTTGAG
ACATAATCTCTTACAATAACAAGGTAATTCAGCGACAGTGTAAACGCTCA
GCACTCAAATAATGCTTTTGGCATAAAAAGCAAGCAGACATGTATGTCTG
AGAGTTTCCTATCCCCTCTCAGTTCTTCTTTCCTGCAGTTGCAGACCCAA
AACCACCAAACACCGACTAGTCGTACTTTCGTCGCTTCCTTTTACAACAA
AGTTTACTAAAATAATTATACGGAAGCCGAAGGTTAACATTGAAGCTTCC
GTGGTTAGCTTAG
Run BLAST on NCBI

protein sequence of TCONS_00034683-protein

>TCONS_00034683-protein ID=TCONS_00034683-protein|Name=TCONS_00034683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MDLQSLTFLFLIFILLISYRLLFRDNIFWDKLFHHFSFLRSQESKAKQLA
DKCSEKFRSSSLFQATLKVLDLEEHDVPHIDAISDRFLDFSELSEAIKAA
GLDSSNIIVGVDFTASNEWQGRNSFDRKSLHTISKSKKNPYQKVITSIAS
TLSVFDDDNLIPAYGFGDVTTKDKAVFSFTPDESPCKGFLHVLECYENVV
KMVELSGPTSFVPIIEKAVAITKKCEGYHILIIVADGQVEEEADYITKQA
IIRASYYPLSIIVVGVGDGPWENMVTYDEKLPSRLFDNFQFVDYSECTKK
STKSPELTFALHALMEIPDQYKKIKELGLLERKNRE
Run BLAST on NCBI

transcript from alignment at sc0001204:9308..11720

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034683 ID=TCONS_00034683|Name=TCONS_00034683|organism=Clytia hemisphaerica|type=transcript|length=2413bp|location=Sequence derived from alignment at sc0001204:9308..11720 (Clytia hemisphaerica)
CTAAGCTAACCACGGAAGCTTCAATGTTAACCTTCGGCTTCCGTATAATT
ATTTTAGTAAACTTTGTTGTAAAAGGAAGCGACGAAAGTACGACTAGTCG
GTGTTTGGTGGTTTTGGGTCTGCAACTGCAGGAAAGAAGAACTGAGAGGG
GATAGGAAACTCTCAGACATACATGTCTGCTTGCTTTTTATGCCAAAAGC
ATTATTTGAGTGCTGAGCGTTTACACTGTCGCTGAATTACCTTGTTATTG
TAAGAGATTATGTCTCAAGAAACAACCAACAAGCAACAATAAACAGCTGC
TAAAATCCAGAAGTTTAGCGAAAACATGGACTTGCAATCGTTGACATTCC
TCTTTTTGATATTCATCTTATTGATATCTTATCGACTTCTTTTTCGAGAT
AACATATTTTGGGACAAACTTTTTCATCATTTTTCATTCCTTCGCTCACA
AGAAAGCAAAGCAAAGCAATTGGCTGACAAATGTTCTGAAAAATTCAGAT
CAAGCAGTCTGTTTCAAGCTACCTTGAAGGTATTAGATTTGGAAGAGCAT
GACGTTCCCCATATTGATGCTATTAGTGACAGATTTTTAGATTTCTCAGA
GTTATCAGAAGCCATCAAAGCTGCTGGTTTGGATTCAAGCAACATAATAG
TTGGTGTAGATTTCACAGCTTCAAATGAGTGGCAAGGGAGGAATTCATTT
GATCGTAAATCACTTCACACAATATCCAAAAGTAAAAAGAATCCATATCA
AAAAGTCATCACATCTATAGCATCAACATTAAGTGTATTTGACGATGATA
ATCTGATTCCAGCATATGGTTTTGGGGATGTTACCACAAAAGATAAAGCT
GTTTTCAGTTTCACACCTGATGAATCACCTTGTAAAGGTTTTTTACATGT
TTTAGAATGCTATGAAAATGTTGTAAAAATGGTGGAACTCAGTGGCCCAA
CCAGCTTTGTTCCAATAATTGAGAAAGCTGTTGCAATTACAAAAAAGTGC
GAAGGATATCATATTTTGATTATTGTTGCTGACGGACAGGTTGAAGAAGA
AGCAGATTATATCACAAAGCAAGCCATTATTAGAGCATCGTACTATCCTC
TTTCAATTATTGTTGTTGGGGTGGGAGATGGCCCTTGGGAGAATATGGTG
ACTTATGATGAGAAACTGCCATCTCgactttttgacaattttcaattTGT
TGATTACAGTGAATGTACAAAAAAGTCAACCAAGTCTCCGGAATTGACAT
TTGCGCTTCACGCTTTAATGGAAATACCAGACCAATACAAAAAGATCAAA
GAATTAGGACTTCTAGAAAGAAAGAATAGAGAATGatttgcttaaaaatc
aatatcaGGGCATGCTACCAAAGTCAGTTAAGTTTTAGgtgaattaattt
ttgcaattttcacaaattttgggCATCTTcatgaaaaattacttttttgt
gaaaaatttgagatcttaattttggcaaaaaacttcTAGGAGATAACTGA
AATTATGTGAAAATTTATCAAAGTGATTTGCAATTggggaaaagaatttt
tcttaagaaaaaaaatacaatacaagaatttttggcagaaataaaaattg
aaaataatgagTTGGAAAAGTTCAAAAACTAAATGAAATCTGATTTggtg
agaatttaatttggtgttGGTCTGTGTTGGTAGAAAAATAAATCTTGGTT
TTTTTGCTGGATTTCTGGTAAGTCTGCCAAAAGATACAATTTTGGTAATC
AAATAAACTGATTTATATACATCaatactgaaaatttcattcattttaaa
aatcattggGATTTAAAATACAATTAACTTAGGTTCTTACAATTAAATGT
AAAGTATATTTTTGTACTATAATACTGTTATTTAAATTCTTCATCTTTCG
TAcagtattttttgattttatatgaGAAAATGGTATTGCATATGCTTCTT
TGTCAATATTGTAACTCAATCTAGATGTTTTGATTCttattgatttcaat
ttttaaagggGTTTTAATTCTTTGTACATTTAATTGTAATTATATTTGTT
TTacatttaatattttagatagaatttttttcgtttttaataacattttt
cttttcatgatGTAATTATGATTGTTTAATTTTTGCACAAACATGCTTCC
GACGTAGAATCAATTAGGTTTcgaatttttaagaataagaatTTGTTGTG
ATCAACAAAAACGCTCAGCACTTGAGGAAGTTAATCCGgactatttattt
attttattgctcttttgttattttaagattttatctttataaaaataatt
atatggATTATTATCCATGACAATTTCTTTCAACATaaatcttttcaatg
ttttatATTAGAGCGGATATAtttcaaatgattttgtttttcgaCTGTTA
GTTTATCAacaaa

Coding sequence (CDS) from alignment at sc0001204:9308..11720

>TCONS_00034683 ID=TCONS_00034683|Name=TCONS_00034683|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0001204:9308..11720 (Clytia hemisphaerica)
ATGGACTTGCAATCGTTGACATTCCTCTTTTTGATATTCATCTTATTGAT
ATCTTATCGACTTCTTTTTCGAGATAACATATTTTGGGACAAACTTTTTC
ATCATTTTTCATTCCTTCGCTCACAAGAAAGCAAAGCAAAGCAATTGGCT
GACAAATGTTCTGAAAAATTCAGATCAAGCAGTCTGTTTCAAGCTACCTT
GAAGGTATTAGATTTGGAAGAGCATGACGTTCCCCATATTGATGCTATTA
GTGACAGATTTTTAGATTTCTCAGAGTTATCAGAAGCCATCAAAGCTGCT
GGTTTGGATTCAAGCAACATAATAGTTGGTGTAGATTTCACAGCTTCAAA
TGAGTGGCAAGGGAGGAATTCATTTGATCGTAAATCACTTCACACAATAT
CCAAAAGTAAAAAGAATCCATATCAAAAAGTCATCACATCTATAGCATCA
ACATTAAGTGTATTTGACGATGATAATCTGATTCCAGCATATGGTTTTGG
GGATGTTACCACAAAAGATAAAGCTGTTTTCAGTTTCACACCTGATGAAT
CACCTTGTAAAGGTTTTTTACATGTTTTAGAATGCTATGAAAATGTTGTA
AAAATGGTGGAACTCAGTGGCCCAACCAGCTTTGTTCCAATAATTGAGAA
AGCTGTTGCAATTACAAAAAAGTGCGAAGGATATCATATTTTGATTATTG
TTGCTGACGGACAGGTTGAAGAAGAAGCAGATTATATCACAAAGCAAGCC
ATTATTAGAGCATCGTACTATCCTCTTTCAATTATTGTTGTTGGGGTGGG
AGATGGCCCTTGGGAGAATATGGTGACTTATGATGAGAAACTGCCATCTC
gactttttgacaattttcaattTGTTGATTACAGTGAATGTACAAAAAAG
TCAACCAAGTCTCCGGAATTGACATTTGCGCTTCACGCTTTAATGGAAAT
ACCAGACCAATACAAAAAGATCAAAGAATTAGGACTTCTAGAAAGAAAGA
ATAGAGAATGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020147XLOC_020147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034683-proteinTCONS_00034683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034683-exon-sc0001204-1491911889:9308..11720TCONS_00034683-exon-sc0001204-1491911889:9308..11720Clytia hemisphaericaexon
TCONS_00034683-exon-sc0001204-1510915933:9308..11720TCONS_00034683-exon-sc0001204-1510915933:9308..11720Clytia hemisphaericaexon
TCONS_00034683-exon-sc0001204-1575043694:9308..11720TCONS_00034683-exon-sc0001204-1575043694:9308..11720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001204supercontigsc0001204:9308..11720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1409	2.37026	1.38516	1.49781	14.6961	11.2528	16.5562	16.1584	14.2293	11.8958	12.9978	9.70205	11.3693	7.37115	8.7565	8.42597	9.06296	9.00437	12.7994	13.9308	8.6066	8.42636	11.5538	12.3834	6.77478	9.05408	13.3757	11.0242	13.2211	13.9071
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR010734Copine
Blast
[Close]
BLAST of TCONS_00034683 vs. Swiss-Prot (Human)
Match: CPNE7 (Copine-7 OS=Homo sapiens GN=CPNE7 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.733e-26
Identity = 81/231 (35.06%), Postives = 113/231 (48.92%), Query Frame = -2 
Query: 1129 VGVDFTASNEWQGRNSFDRKSLHTISKSKKNPYQKVITSIASTLSVFDDDNLIPAYGFGDVTTKDKAV-----FSFTPDESPCKGFLHVLECYENVVKMVELSGPTSFVPIIEKAVAI------TKKCEGYHILIIVADGQVEEEADYITKQAIIRASYYPLSIIVVGVGDGPWENMVTYD--------EKLPSRLFDNFQFVDYSECTKKSTKSPELTFALHALMEIPDQ 1764
            V +DFTASN    RNS    SLH I+  + N Y K + S+      +D D    A GFG        V      +F P++  C+G   V+E Y+N +  V+L GPT+  PII K   +      T K   Y+IL+I+ DG V + AD  T++AI+RAS  P+SII+VGVG+  + +M   D         +    L D  QFV + E    S  +     A   L E+P Q
Sbjct:  385 VAIDFTASNG-DPRNSC---SLHYINPYQPNEYLKALVSVGEICQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPRVQLYGPTNVAPIISKVARVAAAEESTGKASQYYILLILTDGVVTDMAD--TREAIVRASRLPMSIIIVGVGNADFTDMQVLDGDDGVLRSPRGEPALRDIVQFVPFRELKNASPAA----LAKCVLAEVPKQ 605
The following BLAST results are available for this feature:
BLAST of TCONS_00034683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPNE74.733e-2635.06Copine-7 OS=Homo sapiens GN=CPNE7 PE=1 SV=1[more]
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