TCONS_00034677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034677
Unique NameTCONS_00034677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034677 ID=TCONS_00034677|Name=TCONS_00034677|organism=Clytia hemisphaerica|type=transcript|length=1747bp
aaatatttttatctccattGTTTGTTACCTCCGTAGTTTTTCTATATCTG
GTATTTTGATTCCGCTGTCCAatatgtaaacattccattcaagatggcgg
acgaaaaagctgaaaaatctaaaaagtgTAAGAAACACAAGCTTGAGAAT
GATGAAAATCCTGGCCTCGAAAATGTACAAAAGAAGCAAAGGAAAGAGAT
TTCGGAAAGTGGATTTTCTGGTAAAGtttctttcttcaaagaagtaaaTA
AACGTGAGATAGGCTACCGTATTTGTCCAATATCTTTGAGTTATCGAAAG
AAGATTGAATCCTCATTTGATTGGTTTCTTCCTATCGATAGTGTAAAAGG
AACAATAAGCACCAGAAAAATAACTGGACATGGAGCAGTATTCAACCTTG
AGTTTTCACCAGATGATAAATATCTTGTTGCTGCTTGTGAGATGCACTCT
GCAATGTTGTTTGATCCACACAGTCAAAAGAAAGTCGGTGATATTATGCA
TGCTCACACAGATAGTGTAAATTGTGTTACCTTCTTGGATATAAGAACAT
TTGCTACCTGCTCAGATGATAAAACTATTTCTTTATGGGATAtcagaaat
acaaaaaaagatCTAATGACCTTAAAGGGACACAAAAATTGGGTGAAAAg
tataaatttttttccagaatcAAAGCAATTGATATCTTCAGCATTTGATG
ATACTGTTCGTGTTTGGGATATAAACAAATTTCGTAAAAATAAACCAGTC
AAAGGAAAAAAGATAATGAACATCCCATACTTAACAAGGACTAAAATTTC
AGTTGATAAATTTGGAAAACCAAAGTTAATAGCAGCGACAACAACAGGTG
TCCTTTTTGTGGTACACAATCTTTGTTTAAAAACATTGATGCTTGACACG
TGTCTTTCAATGAGAGATTTGCACAGTGCcaacttcaatgaaaatgattt
tgcaGAACTGAATCAAAACAACATTAACATGGGTGAAGAAAACAGAATAG
AGTTTATACCAACATTTGCTCCAGATACTGTTCCATGGTGTATAGCTTCT
GTACAAGTCCACCCAAAGATTGACTCCATTTTGTCGAGATATACAACAAG
AGGTCAGGATAATGATGAATGGACAACTGTGCACACTTTGAAAGAAGaaa
actcaAGTAAAGACGATGGGTTTTATGAACTCGAAAGCTATATTGAGGAG
TCAAACTTGAATTCAGATTATATCAAAGAGCTTTGTTACAACAACGATGG
AAGACTTGTATGCTCACCTTTTGGCAACggtgttagaatattatctTGTT
ACAAAGATGACTTTTCAAACAAACAATCACTGAAAGAGATAAAGTATATA
ACTGGTCATCGAAATACTGTTTTGACTACAAAATTTGCAACACATCTGAA
TATGTTTGCATCAGGGTGTCTAGATGGGCAAGTTTCCTTTTATAAaccta
aattttaattttggaacccctttctttataaaaaattataactttttgtt
ttagATACTTTTTTGTATAATATTTTTAAGTCGTTTATCCATCACACTTT
TTCCAGTTAAAACAAAGTacacaattttttaagaaactagttttatcaag
cagcctcaatgtttctaaagaaatcggccttttggactttaaatgtttct
tacatgtttctaaactttttgacataataaATCATCCTGATGGGAAgact
ggattggaaggttcttagaaaaaccgaattaaaaaatgttattttct
Run BLAST on NCBI

protein sequence of TCONS_00034677-protein

>TCONS_00034677-protein ID=TCONS_00034677-protein|Name=TCONS_00034677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MADEKAEKSKKCKKHKLENDENPGLENVQKKQRKEISESGFSGKVSFFKE
VNKREIGYRICPISLSYRKKIESSFDWFLPIDSVKGTISTRKITGHGAVF
NLEFSPDDKYLVAACEMHSAMLFDPHSQKKVGDIMHAHTDSVNCVTFLDI
RTFATCSDDKTISLWDIRNTKKDLMTLKGHKNWVKSINFFPESKQLISSA
FDDTVRVWDINKFRKNKPVKGKKIMNIPYLTRTKISVDKFGKPKLIAATT
TGVLFVVHNLCLKTLMLDTCLSMRDLHSANFNENDFAELNQNNINMGEEN
RIEFIPTFAPDTVPWCIASVQVHPKIDSILSRYTTRGQDNDEWTTVHTLK
EENSSKDDGFYELESYIEESNLNSDYIKELCYNNDGRLVCSPFGNGVRIL
SCYKDDFSNKQSLKEIKYITGHRNTVLTTKFATHLNMFASGCLDGQVSFY
KPKF
Run BLAST on NCBI

transcript from alignment at sc0001204:16766..19084-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034677 ID=TCONS_00034677|Name=TCONS_00034677|organism=Clytia hemisphaerica|type=transcript|length=2319bp|location=Sequence derived from alignment at sc0001204:16766..19084- (Clytia hemisphaerica)
AAATATTTTTATCTCCATTGTTTGTTACCTCCGTAGTTTTTCTATATCTG
GTATTTTGATTCCGCTGTCCAATATGTAAACATTCCATTCAAGATGGCGG
ACGAAAAAGCTGAAAAATCTAAAAAGTGTAAGAAACACAAGCTTGAGAAT
GATGAAAATCCTGGCCTCGAAAATGTACAAAAGAAGCAAAGGAAAGAGAT
TTCGGAAAGTGGATTTTCTGGTAAAGTTTCTTTCTTCAAAGAAGTAAATA
AACGTGAGATAGGCTACCGTATTTGTCCAATATCTTTGAGTTATCGAAAG
AAGATTGAATCCTCATTTGATTGGTTTCTTCCTATCGATAGTGTAAAAGG
AACAATAAGCACCAGAAAAATAACTGGACATGGAGCAGTATTCAACCTTG
AGTTTTCACCAGATGATAAATATCTTGTTGCTGCTTGTGAGATGCACTCT
GCAATGTTGTTTGATCCACACAGTCAAAAGAAAGTCGGTGATATTATGCA
TGCTCACACAGATAGTGTAAATTGTGTTACCTTCTTGGATATAAGAACAT
TTGCTACCTGCTCAGATGATAAAACTATTTCTTTATGGGATATCAGAAAT
ACAAAAAAAGATCTAATGACCTTAAAGGGACACAAAAATTGGGTGAAAAG
TATAAATTTTTTTCCAGAATCAAAGCAATTGATATCTTCAGCATTTGATG
ATACTGTTCGTGTTTGGGATATAAACAAATTTCGTAAAAATAAACCAGTC
AAAGGAAAAAAGATAATGAACATCCCATACTTAACAAGGACTAAAATTTC
AGTTGATAAATTTGGAAAACCAAAGTTAATAGCAGCGACAACAACAGGTG
TCCTTTTTGTGGTACACAATCTTTGTTTAAAAACATTGATGCTTGACACG
TGTCTTTCAATGAGAGATTTGCACAGTGCCAACTTCAATGAAAATGATTT
TGCAGAACTGAATCAAAACAACATTAACATGGGTGAAGAAAACAGAATAG
AGTTTATACCAACATTTGCTCCAGATACTGTTCCATGGTGTATAGCTTCT
GTACAAGTCCACCCAAAGATTGACTCCATTTTGTCGAGATATACAACAAG
AGGTCAGGATAATGATGAATGGACAACTGTGCACACTTTGAAAGAAGGTA
AGAAAAAAGATATACCTTTAAGGGAATATTAATTAGACAATTGATTGTTG
ACAAATCAGAACAAATGTATCTACTGTGTTTTAAAAATAAATCAATACAC
CTTTTTTCCTGAGTTTATTTCGACTTTTTGACTTTGTATCACCAAAAGCT
TCAAAAGTATCAAGTTCTCGTTTCAAACTGGAGAGGTCGAAAAAAATCGA
TAAACTTGCGAAAGGTGTATTCAGATTTTATTGTTGTTATTGTTGACAAC
CATAAATTCTGCTTAACATCGAAATCTTCTGCTATGCCACTGATTTGTTT
CAATTACAATTAGATCAAAATTTTGTGATTGAATAAATCAGATTGATTGA
TTTATTCTTAAGCTGACTTTTGGATTGTTAATCGTAAACACTGTACAATT
TGTCCATTTTGATTGTTAAGTTTTATCTTTTAGTTCAAAGCTTTCAGGGT
TGTTTAAATAATGTGAAATAAAATATGACAATGGATTATTAAATTAACCA
ATTGTTTGAGAATAAATACAGGTATTTATATCAAGAAATGAGTTTTATTT
ATGGAATTTTATTTTTTAGAAAACTCAAGTAAAGACGATGGGTTTTATGA
ACTCGAAAGCTATATTGAGGAGTCAAACTTGAATTCAGATTATATCAAAG
AGCTTTGTTACAACAACGATGGAAGACTTGTATGCTCACCTTTTGGCAAC
GGTGTTAGAATATTATCTTGTTACAAAGATGACTTTTCAAACAAACAATC
ACTGAAAGAGATAAAGTATATAACTGGTCATCGAAATACTGTTTTGACTA
CAAAATTTGCAACACATCTGAATATGTTTGCATCAGGGTGTCTAGATGGG
CAAGTTTCCTTTTATAAACCTAAATTTTAATTTTGGAACCCCTTTCTTTA
TAAAAAATTATAACTTTTTGTTTTAGATACTTTTTTGTATAATATTTTTA
AGTCGTTTATCCATCACACTTTTTCCAGTTAAAACAAAGTACACAATTTT
TTAAGAAACTAGTTTTATCAAGCAGCCTCAATGTTTCTAAAGAAATCGGC
CTTTTGGACTTTAAATGTTTCTTACATGTTTCTAAACTTTTTGACATAAT
AAATCATCCTGATGGGAAGACTGGATTGGAAGGTTCTTAGAAAAACCGAA
TTAAAAAATGTTATTTTCT

Coding sequence (CDS) from alignment at sc0001204:16766..19084-

>TCONS_00034677 ID=TCONS_00034677|Name=TCONS_00034677|organism=Clytia hemisphaerica|type=CDS|length=2730bp|location=Sequence derived from alignment at sc0001204:16766..19084- (Clytia hemisphaerica)
AAAACTCAAGTAAAGACGATGGGTTTTATGAACTCGAAAGCTATATTGAG
GAGTCAAACTTGAATTCAGATTATATCAAAGAGCTTTGTTACAACAACGA
TGGAAGACTTGTATGCTCACCTTTTGGCAACGGTGTTAGAATATTATCTT
GTTACAAAGATGACTTTTCAAACAAACAATCACTGAAAGAGATAAAGTAT
ATAACTGGTCATCGAAATACTGTTTTGACTACAAAATTTGCAACACATCT
GAATATGTTTGCATCAGGGTGTCTAGATGGGCAAGTTTCCTTTTATAAAC
CTAAATTTTAAATGGCGGACGAAAAAGCTGAAAAATCTAAAAAGTGTAAG
AAACACAAGCTTGAGAATGATGAAAATCCTGGCCTCGAAAATGTACAAAA
GAAGCAAAGGAAAGAGATTTCGGAAAGTGGATTTTCTGGTAAAGTTTCTT
TCTTCAAAGAAGTAAATAAACGTGAGATAGGCTACCGTATTTGTCCAATA
TCTTTGAGTTATCGAAAGAAGATTGAATCCTCATTTGATTGGTTTCTTCC
TATCGATAGTGTAAAAGGAACAATAAGCACCAGAAAAATAACTGGACATG
GAGCAGTATTCAACCTTGAGTTTTCACCAGATGATAAATATCTTGTTGCT
GCTTGTGAGATGCACTCTGCAATGTTGTTTGATCCACACAGTCAAAAGAA
AGTCGGTGATATTATGCATGCTCACACAGATAGTGTAAATTGTGTTACCT
TCTTGGATATAAGAACATTTGCTACCTGCTCAGATGATAAAACTATTTCT
TTATGGGATATCAGAAATACAAAAAAAGATCTAATGACCTTAAAGGGACA
CAAAAATTGGGTGAAAAGTATAAATTTTTTTCCAGAATCAAAGCAATTGA
TATCTTCAGCATTTGATGATACTGTTCGTGTTTGGGATATAAACAAATTT
CGTAAAAATAAACCAGTCAAAGGAAAAAAGATAATGAACATCCCATACTT
AACAAGGACTAAAATTTCAGTTGATAAATTTGGAAAACCAAAGTTAATAG
CAGCGACAACAACAGGTGTCCTTTTTGTGGTACACAATCTTTGTTTAAAA
ACATTGATGCTTGACACGTGTCTTTCAATGAGAGATTTGCACAGTGCCAA
CTTCAATGAAAATGATTTTGCAGAACTGAATCAAAACAACATTAACATGG
GTGAAGAAAACAGAATAGAGTTTATACCAACATTTGCTCCAGATACTGTT
CCATGGTGTATAGCTTCTGTACAAGTCCACCCAAAGATTGACTCCATTTT
GTCGAGATATACAACAAGAGGTCAGGATAATGATGAATGGACAACTGTGC
ACACTTTGAAAGAAGAAAACTCAAGTAAAGACGATGGGTTTTATGAACTC
GAAAGCTATATTGAGGAGTCAAACTTGAATTCAGATTATATCAAAGAGCT
TTGTTACAACAACGATGGAAGACTTGTATGCTCACCTTTTGGCAACGGTG
TTAGAATATTATCTTGTTACAAAGATGACTTTTCAAACAAACAATCACTG
AAAGAGATAAAGTATATAACTGGTCATCGAAATACTGTTTTGACTACAAA
ATTTGCAACACATCTGAATATGTTTGCATCAGGGTGTCTAGATGGGCAAG
TTTCCTTTTATAAACCTAAATTTTAAATGGCGGACGAAAAAGCTGAAAAA
TCTAAAAAGTGTAAGAAACACAAGCTTGAGAATGATGAAAATCCTGGCCT
CGAAAATGTACAAAAGAAGCAAAGGAAAGAGATTTCGGAAAGTGGATTTT
CTGGTAAAGTTTCTTTCTTCAAAGAAGTAAATAAACGTGAGATAGGCTAC
CGTATTTGTCCAATATCTTTGAGTTATCGAAAGAAGATTGAATCCTCATT
TGATTGGTTTCTTCCTATCGATAGTGTAAAAGGAACAATAAGCACCAGAA
AAATAACTGGACATGGAGCAGTATTCAACCTTGAGTTTTCACCAGATGAT
AAATATCTTGTTGCTGCTTGTGAGATGCACTCTGCAATGTTGTTTGATCC
ACACAGTCAAAAGAAAGTCGGTGATATTATGCATGCTCACACAGATAGTG
TAAATTGTGTTACCTTCTTGGATATAAGAACATTTGCTACCTGCTCAGAT
GATAAAACTATTTCTTTATGGGATATCAGAAATACAAAAAAAGATCTAAT
GACCTTAAAGGGACACAAAAATTGGGTGAAAAGTATAAATTTTTTTCCAG
AATCAAAGCAATTGATATCTTCAGCATTTGATGATACTGTTCGTGTTTGG
GATATAAACAAATTTCGTAAAAATAAACCAGTCAAAGGAAAAAAGATAAT
GAACATCCCATACTTAACAAGGACTAAAATTTCAGTTGATAAATTTGGAA
AACCAAAGTTAATAGCAGCGACAACAACAGGTGTCCTTTTTGTGGTACAC
AATCTTTGTTTAAAAACATTGATGCTTGACACGTGTCTTTCAATGAGAGA
TTTGCACAGTGCCAACTTCAATGAAAATGATTTTGCAGAACTGAATCAAA
ACAACATTAACATGGGTGAAGAAAACAGAATAGAGTTTATACCAACATTT
GCTCCAGATACTGTTCCATGGTGTATAGCTTCTGTACAAGTCCACCCAAA
GATTGACTCCATTTTGTCGAGATATACAACAAGAGGTCAGGATAATGATG
AATGGACAACTGTGCACACTTTGAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020144XLOC_020144Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034677-proteinTCONS_00034677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034677-exon-sc0001204-1575043694:17938..19084TCONS_00034677-exon-sc0001204-1575043694:17938..19084Clytia hemisphaericaexon
TCONS_00034677-exon-sc0001204-1575043694:16766..17365TCONS_00034677-exon-sc0001204-1575043694:16766..17365Clytia hemisphaericaexon
TCONS_00034677-exon-sc0001204-1510915933:17938..19084TCONS_00034677-exon-sc0001204-1510915933:17938..19084Clytia hemisphaericaexon
TCONS_00034677-exon-sc0001204-1510915933:16766..17365TCONS_00034677-exon-sc0001204-1510915933:16766..17365Clytia hemisphaericaexon
TCONS_00034677-exon-sc0001204-1491911889:17938..19084TCONS_00034677-exon-sc0001204-1491911889:17938..19084Clytia hemisphaericaexon
TCONS_00034677-exon-sc0001204-1491911889:16766..17365TCONS_00034677-exon-sc0001204-1491911889:16766..17365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001204supercontigsc0001204:16766..19084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.8727	19.6503	11.3523	11.0635	8.30577	5.2605	6.46634	6.9411	4.37374	3.80434	4.3469	3.91779	4.61167	4.92306	5.15714	5.15879	6.04351	7.01086	2.77197	2.5661	5.63918	5.09718	24.5765	23.67	3.26918	4.26389	3.65125	2.45535	12.0242	12.5927
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00034677 vs. Swiss-Prot (Human)
Match: DCA10 (DDB1- and CUL4-associated factor 10 OS=Homo sapiens GN=DCAF10 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.473e-64
Identity = 149/428 (34.81%), Postives = 226/428 (52.80%), Query Frame = 1 
Query:  298 KKIESSFDWFLPIDSVKGTISTRKITGHGAVFNLEFSPDDKYLVAACEMHSAMLFDPHSQKKVGDIMHAHTDSVNCVTFLDIRTFATCSDDKTISLWDIRNTKKDLMTLKGHKNWVKSINFFPESKQLISSAFDDTVRVWDINKFRKNKPVKGKKIMNIPYLTRTKISVDKFGKPKLIAATTTGVLFVVHNLCL-KTLMLDTCLSMRDL-------------------------HS-ANFNENDFAELNQNNINMGEENRIEFIPTFAPDTVPW-----CIASVQVHPKIDSILSRYTTRGQDNDEWTTVHTLKEENSSKDDG---FYELESYIEESNLNSDYIKELCYNNDGRLVCSPFGNGVRILSCYKD-----DFSNKQS--LKEIKYITGHRNTVLTTKFATHLNMFASGCLDGQVSFYKPKF 1455
            + + S +    P DSV   +STR    HGAVFNLE+SPD   L  ACE    +LFDP S K +  +  AH D VN + FLD R FATCSDD TI+LWD+R     + TL GH +WVK+I +   ++ L++S FD  V +WD N++ ++     KK  +  +L R +++ D     K++ +T++G L ++H+L L K+L + +   +R                           HS +N +E   +  +Q    +   N +E +    P+ +       CI S+Q+HPK  + L R ++   D++E T V+  +E    +         L  YIEE+N+   YIKELC++ DGR++ SP G G+R+L   K      D   K++  L+ I+ +  H + VLTTKF+      ASGCL G+VS Y+PKF
Sbjct:  146 RTMTSLYGSIHPADSVY--LSTRT---HGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRYTEDG-CPHKKFFHTRFLMRMRLTPDCS---KMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSEKHMSRASQRE-GVSPRNSLEVV---TPEVLGESDHGNCITSLQLHPKGWATLLRCSSN-SDDEECTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF 559
The following BLAST results are available for this feature:
BLAST of TCONS_00034677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCA101.473e-6434.81DDB1- and CUL4-associated factor 10 OS=Homo sapien... [more]
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