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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00033740 ID=TCONS_00033740|Name=TCONS_00033740|organism=Clytia hemisphaerica|type=transcript|length=991bp
AGAGTTATATAGACCTGGCGATCAAAATCATCAGTTTTCAAACAATGTTT
GTGCTACTTTTAATATCATTCTTGAGATACCAAAGCATAGTGTACCCTTT
CACAAAGAAGATCAACAAACGGCAAAGTATGTATCTGTCCATTGCAAGTA
TGTCGATTTCGATTCTACTATGGGGTGCATGGTTTTTGATGTGGCTTTAT
GGGTGGGAGGACGTTTTATACCGAACAGTCATCgacctttcaacaagatg
tacaTTACTGTTGATCCTAGTCATTTTCTATAGAAAAACTTCGAGCGCTT
TGATAAGGTCAGTGGAGAACAGCCAAGCGAAAGAGCGAAACAAAATAGCT
TTAAAGACTTTGAAGTTCTTGCTATGGTTGTTTGCAATTACgatgacttt
ttcgaaagttctAAATTCGTGTTTGGGTGAGATTGACATGTCAAAATTGA
GCACAGATTGGGTAACCGCATTGCTGTATGTCCGAGCTGTTTTGTTGAAT
ATGCCCCTCATCAACAGTGTTGCGAACTGTTTCATTTATATGAAAATGAA
TCCAGAGTTTCGCTCGTTTGTCTTAAACGTCTTTACTGTGAAACAATGTA
GAAGAAAGACGTGATACAGTAACAATGGGCGAGCAaacgtcaaatttaaa
aaacttgaaagttATCGCAGTGGAGTTTTTCGAATCGAGCTCAATAAAGG
AAGGAGGTTATTTTTTATTATGAGCTACACGATGggaaaatgaacttttt
caGAACGCAAATCACTTCACTTACTTGAGGGGTTCATAGGCCATAAGGAT
TTGTCGGATATGTGATTCATTTTTTTTCCGTCCCCTAACGCCTGCAAACT
ACACTaactaattttaattttcaaaattatttcaagatGATTTCCTAAAA
GTTGtcaatattcatgatgaaatgggaAAAACATCATCTTTATTTAAAAT
AGCGTGTATCCTTTGTAAATATTTATTTGTTATAATGGCGC Run BLAST on NCBI protein sequence of TCONS_00033740-protein >TCONS_00033740-protein ID=TCONS_00033740-protein|Name=TCONS_00033740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
SYIDLAIKIISFQTMFVLLLISFLRYQSIVYPFTKKINKRQSMYLSIASM
SISILLWGAWFLMWLYGWEDVLYRTVIDLSTRCTLLLILVIFYRKTSSAL
IRSVENSQAKERNKIALKTLKFLLWLFAITMTFSKVLNSCLGEIDMSKLS
TDWVTALLYVRAVLLNMPLINSVANCFIYMKMNPEFRSFVLNVFTVKQCR
RKT Run BLAST on NCBI transcript from alignment at sc0001082:16760..17750 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00033740 ID=TCONS_00033740|Name=TCONS_00033740|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0001082:16760..17750 (Clytia hemisphaerica)
GCGCCATTATAACAAATAAATATTTACAAAGGATACACGCTATTTTAAAT
AAAGATGATGTTTTtcccatttcatcatgaatattgaCAACTTTTAGGAA
ATCatcttgaaataattttgaaaattaaaattagttAGTGTAGTTTGCAG
GCGTTAGGGGACGGAAAAAAAATGAATCACATATCCGACAAATCCTTATG
GCCTATGAACCCCTCAAGTAAGTGAAGTGATTTGCGTTCtgaaaaagttc
attttccCATCGTGTAGCTCATAATAAAAAATAACCTCCTTCCTTTATTG
AGCTCGATTCGAAAAACTCCACTGCGATaactttcaagttttttaaattt
gacgttTGCTCGCCCATTGTTACTGTATCACGTCTTTCTTCTACATTGTT
TCACAGTAAAGACGTTTAAGACAAACGAGCGAAACTCTGGATTCATTTTC
ATATAAATGAAACAGTTCGCAACACTGTTGATGAGGGGCATATTCAACAA
AACAGCTCGGACATACAGCAATGCGGTTACCCAATCTGTGCTCAATTTTG
ACATGTCAATCTCACCCAAACACGAATTTagaactttcgaaaaagtcatc
GTAATTGCAAACAACCATAGCAAGAACTTCAAAGTCTTTAAAGCTATTTT
GTTTCGCTCTTTCGCTTGGCTGTTCTCCACTGACCTTATCAAAGCGCTCG
AAGTTTTTCTATAGAAAATGACTAGGATCAACAGTAAtgtacatcttgtt
gaaaggtcGATGACTGTTCGGTATAAAACGTCCTCCCACCCATAAAGCCA
CATCAAAAACCATGCACCCCATAGTAGAATCGAAATCGACATACTTGCAA
TGGACAGATACATACTTTGCCGTTTGTTGATCTTCTTTGTGAAAGGGTAC
ACTATGCTTTGGTATCTCAAGAATGATATTAAAAGTAGCACAAACATTGT
TTGAAAACTGATGATTTTGATCGCCAGGTCTATATAACTCT Coding sequence (CDS) from alignment at sc0001082:16760..17750 >TCONS_00033740 ID=TCONS_00033740|Name=TCONS_00033740|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0001082:16760..17750 (Clytia hemisphaerica)
TCACGTCTTTCTTCTACATTGTTTCACAGTAAAGACGTTTAAGACAAACG
AGCGAAACTCTGGATTCATTTTCATATAAATGAAACAGTTCGCAACACTG
TTGATGAGGGGCATATTCAACAAAACAGCTCGGACATACAGCAATGCGGT
TACCCAATCTGTGCTCAATTTTGACATGTCAATCTCACCCAAACACGAAT
TTagaactttcgaaaaagtcatcGTAATTGCAAACAACCATAGCAAGAAC
TTCAAAGTCTTTAAAGCTATTTTGTTTCGCTCTTTCGCTTGGCTGTTCTC
CACTGACCTTATCAAAGCGCTCGAAGTTTTTCTATAGAAAATGACTAGGA
TCAACAGTAAtgtacatcttgttgaaaggtcGATGACTGTTCGGTATAAA
ACGTCCTCCCACCCATAAAGCCACATCAAAAACCATGCACCCCATAGTAG
AATCGAAATCGACATACTTGCAATGGACAGATACATACTTTGCCGTTTGT
TGATCTTCTTTGTGAAAGGGTACACTATGCTTTGGTATCTCAAGAATGAT
ATTAAAAGTAGCACAAACATTGTTTGAAAACTGATGATTTTGATCGCCAG
GTCTATATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00033740-exon-sc0001082-1491911889:16760..17750 | TCONS_00033740-exon-sc0001082-1491911889:16760..17750 | Clytia hemisphaerica | exon |
| TCONS_00033740-exon-sc0001082-1510915933:16760..17750 | TCONS_00033740-exon-sc0001082-1510915933:16760..17750 | Clytia hemisphaerica | exon |
| TCONS_00033740-exon-sc0001082-1575043694:16760..17750 | TCONS_00033740-exon-sc0001082-1575043694:16760..17750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001082 | supercontig | sc0001082:16760..17750 . |
Blast
The following BLAST results are available for this feature:
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