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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00031971 ID=TCONS_00031971|Name=TCONS_00031971|organism=Clytia hemisphaerica|type=transcript|length=1257bp
agtattttaaattttgtggtTTTTAAATCCTACTTTATCTCTTCTTACAT
TCAGTGTAAGGTAAGAGATTATATTTAGAAACTGACTGCTATTTATACAA
GAAGTAAATTGCGGTCGATTTAAGCATAATGTTTAAACGTTTATGTCTTA
GATCAACAAAAAGGAGCTCTGAGACCGATGCTAATGAATCCGGTGATGAG
ACTCGACAAGCACCACCCAAACGTAGACGATTTGAGCTTAATAACGAGAA
TGAAGCTGCTTCATGGGAGTTGACTGAACCTATGAAGTTGTACATAGAGA
AATACATTGCCACTCATGTCCAAGAAAAAGACTTGAAAGAGCAGGTCTAT
AGTGAACATCCTGTCCCAGCTAACCTAAAAAAGGTGCCAGAATTGGACTC
TTATATGAAGACATTATTGCAAGATAATTCAAGATATCAAACATTGAAGT
TTGAGAAGACTTTAAAACATTTGAATGATAAGATACAAGCTGTTTATGGC
CCAGTCTCAAAAATCTGGGCAGCTTACGAGGAAGAGAAAGAGAACTGTAG
TGAAGAGGAATTAGAAGAAGGCCGGGAAAAAGCACAATGCTTCGAACAGG
CTATTATGCTTCTTGGCCAAGTGTCGAACTCAGTGATGTATTACCGCAGA
GAAAACGTCTTGAGTACACTCATTGAATCCTCAGCACAAATTAAAGAAAT
ATTGCAGAATCAATCGAAAGACATGAATGATCAATCCAATTCCAGTCTAT
TTGGTGAAACCTTCGAAACGAAACTAATCAAGGATTCCAAAGCTCTGAAA
AAGTCAGAGGCATTCTTCACCGCCCTGAAAAAGCCGGCAAAGACACAATC
CTCATCTGCTACCGCTGCCAGTTCCAACCAGCCCAATCGCAGGGGCTCCT
TGCTTAGAGGAGGAAGAAGCAGGGGGCAGTTCTCATTTAGAGGACGATAC
TTTCGAGGAAGACGAGGACGTGGTGGTTATCGAGGAAACTGATTTTAGCA
TTTTATGATATAGAATATATGATATAGTCGGAAAAGACTTTGAGTTACAT
ATTTGTGTCATTTCTTGTTTTCACTAAGTTGCTTTGTTTGCGCAAAATTG
GTGCTTTtaattatttcaatattttcgacCATTACACATTATTAAAACTG
AAATAATAACTTTATAGTGGTCTTGAGATTTGACTTTCAGACTCTCGGCG
TGAAAGGGCGTATACCAGTATTAGATCGTTGGCTTcgattttatttataa
aatcgGG Run BLAST on NCBI protein sequence of TCONS_00031971-protein >TCONS_00031971-protein ID=TCONS_00031971-protein|Name=TCONS_00031971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MFKRLCLRSTKRSSETDANESGDETRQAPPKRRRFELNNENEAASWELTE
PMKLYIEKYIATHVQEKDLKEQVYSEHPVPANLKKVPELDSYMKTLLQDN
SRYQTLKFEKTLKHLNDKIQAVYGPVSKIWAAYEEEKENCSEEELEEGRE
KAQCFEQAIMLLGQVSNSVMYYRRENVLSTLIESSAQIKEILQNQSKDMN
DQSNSSLFGETFETKLIKDSKALKKSEAFFTALKKPAKTQSSSATAASSN
QPNRRGSLLRGGRSRGQFSFRGRYFRGRRGRGGYRGN Run BLAST on NCBI transcript from alignment at sc0000937:5186..10463+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00031971 ID=TCONS_00031971|Name=TCONS_00031971|organism=Clytia hemisphaerica|type=transcript|length=5278bp|location=Sequence derived from alignment at sc0000937:5186..10463+ (Clytia hemisphaerica)
agtattttaaattttgtggtTTTTAAATCCTACTTTATCTCTTCTTACAT
TCAGTGTAAGGTAAGAGATTATATTTAGAAACTGACTGCTATTTATACAA
GAAGTAAATTGCGGTCGATTTAAGCATAATGTTTAAACGTTTATGTCTTA
GATCAACAAAAAGGAGCTCTGAGACCGATGCTAATGAATCCGGTGATGAG
ACTCGACAAGCACCACCCAAACGTAGACGATTTGAGCTTAATAACGAGAA
TGAAGCTGCTTCATGGGAGTTGACTGAACCTATGAAGTTGTACATAGAGA
AATACATTGCCACTCATGTCCAAGAAAAAGACTTGAAAGAGCAGGTCTAT
AGTGAACATCCTGTCCCAGCTAACCTAAAAAAGGTGCCAGAATTGGACTC
TTATATGAAGACATTATTGCAAGATAATTCAAGATATCAAACATTGAAGT
TTGAGAAGACTTTAAAACATTTGAATGATAAGATACAAGCTGTTTATGGC
CCAGTCTCAAAAATCTGGGCAGCTTACGAGGAAGAGAAAGAGAACTGTAG
TGAAGAGGAATTAGAAGAAGGCCGGGAAAAAGCACAATGCTTCGAACAGG
CTATTATGCTTCTTGGCCAAGTGTCGAACTCAGTGATGTATTACCGCAGA
GAAAACGTCTTGAGTACACTCATTGAATCCTCAGCACAAATTAAAGAAAT
ATTGCAGAATCAATCGAAAGACATGAATGATCAATCCAATTCCAGTCTAT
TTGGTGAAACCTTCGAAACGAAACTAATCAAGGATTCCAAAGCTCTGAAA
AAGTCAGAGGCATTCTTCACCGCCCTGAAAAAGCCGGCAAAGACACAATC
CTCATCTGCTACCGCTGCCAGTTCCAACCAGCCCAATCGCAGGGGCTCCT
TGCTTAGAGGAGGAAGAAGCAGGGGGCAGTTCTCATTTAGAGGTAAGACC
TCATTCCTTTCAAAAATTAGTTTGTCCAAAACCAGAAAACCCTCAACTGA
CAATAACCTGTCTTCTAGACTTGGGAAATCAACATCTTTTGTCCCATGTT
CATCCCTCAGTAAAAGATTTATTTCCCCAGCAGTTAATTCCAAACTTACT
TCCTGCcgggaaattgaaatttttcagccAGAACTGGGAAGTCCTAACTC
AGGACCCCGCAATTCTGCAAGTGGTGAATGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGACTTGGGAAATCAACATCTTTTGTCCCA
TGTTCATCCCTCAGTAAAAGGTTTATTTCCCCAGCAGTTAATTCCAAACT
TACTTCCTGCcgggaaattgaaatttttcagccAGAACTAGGAAGTCCTA
ACTCAGGACCCGGCAATTCTGCAAGTGGTGAATGGCTACAAGATACCATT
CACATCCGTACCTGTTCAGAACAAATTTCCCCATCAACCTCCCATGAAAT
GGGAGGAAGAGTTGTTGATAGAAGCAGAGATCCAGAAAATGCTACAAAAG
GGTGCAATACAAAAAGTACAATCCCCTTCTCCAAATCACTTCCTAAGTTC
AATCTTCCTGGTACCAAAATCAGATTCCGGTCACAGGCCAGTCAtcaatc
tgaaaaatctaaacaaatatGTTCCCTATCTTCACTTCAAAATGGAAACT
TTGGGGCTACTGAGAGAACTGCTGGTAAAGGGAGATTTTATGGTCAAATT
AGACTTGCGAGACGCATACTTCAGCGTCCCCCTTCACAATCTTTCTCGGA
AGTATGTAAGTTTTCGTTGGAAAGGGAAAATATACGAGTTTCTATGCCTT
TGTTTTGGCCTGGGTCCTGCGCCAAGGATTTTTACCAAATTGATGAAGAT
TCCTATAGCTTTGTTAAGACGGCTGAACGTTCGCCTAATTATCTATTTGG
ACGACTGCCTATTGATGGCCTCATCGATAGAGGAACTCCTGATGGCCAGG
GACACCCTCGTATTTGTACTTCAACACTTGGGGTTTTCCATAAATTTCGA
GAAGTCGGTAATGGATCCAACTCACAACATTCGCTTCCTAGGGGTAGAAG
TGAATTCTCTAGACATGATAGTGAGCCTTCCCCAGGACAAGGTAGCCAAA
CTAGTTGCCCAGTGCCAAAAACTACTAGTACCCCCAAAGGTTTCGTTGAG
GGAGTTAACCAGTTTGTTGGGTCGCCTCTCTTCTTCAGCTGTGGCAGTTC
TGCCAGCCCCCCTTCGTTACAGGGCCCTTCAGAGGTTCCAGATACAAGAG
TTAGCATGTCACAACAACTTCGAGGCATTAGTTGTCCTGACGGAAGAAGT
GAAAGAGGAGTTGGATTGGTGGATTCAGAACTTAGAACTTTCCAATGGGC
GTTCTTTAATAACAGCCCCTCCTCAGTTAATAATAGCTTCGGATGCTTCC
AAGGAAGGCTGGGGAGCATTTTGCAAGGGTCAGGAAACAGGGGGCCCGTG
GTCATCTCGGGAGGCAGAAATGCATATCAATGTTCTGGAACTGAAAGCAG
CAAAACTGGCGATTCGTTGCTTTCACAGGGAGTTCCCAAATATCCAGTCG
ATACATTTGCAAATGGACAACATCACAGCCCTAGCTTACTTGAAAAAGAT
GGGGGGAACAAAGAGTCAAGCCTTAATAGATTTGAGCAAGGAGATCTGGG
ATTATCTACTAGACCACCAGATCACGATTACTGTGGAGTACCTCCCTGGA
GTTCTCAATGTGGAAGCAGACAGGCAATCTCGGAGTGTGAAGGATTCAAG
CGAATGGAAATTAGACCCTCACATATTCAAGAAAATATGTCTGCTAAGAG
GATCTCCGGACACAGACCTGTTTGCTTCCAGATTGTCTCACCAGGTTCCT
CTATATTTTTCATGGAAGATAGACCCTTACAGCAGGGGGCAGGACGCCTT
CCAGGCGAGCTGGACACAAATAAGGGGGTATGCATTTCCTCCATTTTGCC
TCATCGGGAAAGTTTTAAAAAAGGTACTTTCAGACAGAGCAACCATTCTG
ATAGTAACTCCTGCTTGGCAAACCCAGTCATGGTTTCCCCAGCTCCTTCA
GTTATCAATCCAAAACCCAATATTACTCCCGCAAAGGCGAAATCTGTTGT
CAAACCCAAAAGGGGAATGGCATCCACTTCTGCTGAATCAAAGTCTCCAG
TTAGTGGTCTGGACAGTTTCAGGGATAGAATCGAAGCAACAGGCATTTCT
AAGAAAGCTTCCTCTCTCATCGCAGCTGCAAGAAGGGACGGGACAGTCGC
TCATTACCAATCGGCCTGGAGTAAGTGGAGTGGCTGGTGTGATAAAAGGC
AGATTGATCCTATTCGATCTCCTCTAAATTTTGTCATTGATTTCCTCTCT
GACTGCTTCGATGAGGGCAAGGAGTTCAATACCATTGCTGGTTACAGATC
TGCTATCTCAGCTTATCATGACCCAATTGATGGGGTAAGGGTTGGGAAAC
ACCCTCTAGTTTCTTCATTGATGGCAGGGATTCACAACAAAAGGTTTCCA
CAGCCCAGATACACTTTCATTTGGGATGTTGAGAAGGTCGTGAGTTATCT
TAGTACAATACCTTCACATTCTGAGAATGTGTCAGATAAACTGTTGACTT
TGAAGCTGACTATGCTATTAGCCTTGACTTCAGCGGCCAGGGCTCATGAG
ATTACATATTTAGATGAACGCTTCCTTGTTAAACATCATTCAAAGTATAC
TTTTCACTTTGGGAAACCCACAAAAACTGCAAAAGTGGGTAAACTTAGAC
CCCCAATAGAATTTCACCATTTTGAAAGTGATTTGAATCTGTGTGTATGC
CGCCACATTGATTTGTACTTGGAAAGAAGTGCTTCATGGAGAAGGGAGAA
AGGGCAATTATTATTGAGTTTCATTAATCCACATGGTCCGGTTAAATCCT
CAACTGTTTCTGGATGGGTCCTTGAGTGCTTGTCACAATCTGGTGTAGAT
ACTGCAACATTTAAAGGCCATTCTACTAGATCTGCCTCAACCTCTAAGGC
CAGTTCTCTTGGAATTCCTCTAAAGGAAATTTTGAAAAGGGGATATTGGG
CCAATTCTACTGTGTTTGAACGGCATTATAAGAAGGAAATGTCTCAGGAA
ATCCCTAAGTTTGATGCCGCCGTTCTCGGGAAGCCGCTTTGAACAGAGGT
CTTGAGAGATGACTTTCAGACTCAAGGCCTGAAAGGGCGTATACCAGTAT
TAGATCGGGCGGAGATTTTATGCAATGAAATTGAGGATTGTGCAAGGGCC
CGAAGGGCCCGCAGTGCAATCCcgattttataaataaaatcgAAGCCAAC
GATCTAATACTGCCCACCCTCCTTCCCCTACTAACACCTATCCTCATGAT
TATTTTCTTTCAGGACGATACTTTCGAGGAAGACGAGGACGTGGTGGTTA
TCGAGGAAACTGATTTTAGCATTTTATGATATAGAATATATGATATAGTC
GGAAAAGACTTTGAGTTACATATTTGTGTCATTTCTTGTTTTCACTAAGT
TGCTTTGTTTGCGCAAAATTGGTGCTTTtaattatttcaatattttcgac
CATTACACATTATTAAAACTGAAATAATAACTTTATAGTGGTCTTGAGAT
TTGACTTTCAGACTCTCGGCGTGAAAGGGCGTATACCAGTATTAGATCGT
TGGCTTcgattttatttataaaatcgGG Coding sequence (CDS) from alignment at sc0000937:5186..10463+ >TCONS_00031971 ID=TCONS_00031971|Name=TCONS_00031971|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000937:5186..10463+ (Clytia hemisphaerica)
ATGTTTAAACGTTTATGTCTTAGATCAACAAAAAGGAGCTCTGAGACCGA
TGCTAATGAATCCGGTGATGAGACTCGACAAGCACCACCCAAACGTAGAC
GATTTGAGCTTAATAACGAGAATGAAGCTGCTTCATGGGAGTTGACTGAA
CCTATGAAGTTGTACATAGAGAAATACATTGCCACTCATGTCCAAGAAAA
AGACTTGAAAGAGCAGGTCTATAGTGAACATCCTGTCCCAGCTAACCTAA
AAAAGGTGCCAGAATTGGACTCTTATATGAAGACATTATTGCAAGATAAT
TCAAGATATCAAACATTGAAGTTTGAGAAGACTTTAAAACATTTGAATGA
TAAGATACAAGCTGTTTATGGCCCAGTCTCAAAAATCTGGGCAGCTTACG
AGGAAGAGAAAGAGAACTGTAGTGAAGAGGAATTAGAAGAAGGCCGGGAA
AAAGCACAATGCTTCGAACAGGCTATTATGCTTCTTGGCCAAGTGTCGAA
CTCAGTGATGTATTACCGCAGAGAAAACGTCTTGAGTACACTCATTGAAT
CCTCAGCACAAATTAAAGAAATATTGCAGAATCAATCGAAAGACATGAAT
GATCAATCCAATTCCAGTCTATTTGGTGAAACCTTCGAAACGAAACTAAT
CAAGGATTCCAAAGCTCTGAAAAAGTCAGAGGCATTCTTCACCGCCCTGA
AAAAGCCGGCAAAGACACAATCCTCATCTGCTACCGCTGCCAGTTCCAAC
CAGCCCAATCGCAGGGGCTCCTTGCTTAGAGGAGGAAGAAGCAGGGGGCA
GTTCTCATTTAGAGGACGATACTTTCGAGGAAGACGAGGACGTGGTGGTT
ATCGAGGAAACTGAATGTTTAAACGTTTATGTCTTAGATCAACAAAAAGG
AGCTCTGAGACCGATGCTAATGAATCCGGTGATGAGACTCGACAAGCACC
ACCCAAACGTAGACGATTTGAGCTTAATAACGAGAATGAAGCTGCTTCAT
GGGAGTTGACTGAACCTATGAAGTTGTACATAGAGAAATACATTGCCACT
CATGTCCAAGAAAAAGACTTGAAAGAGCAGGTCTATAGTGAACATCCTGT
CCCAGCTAACCTAAAAAAGGTGCCAGAATTGGACTCTTATATGAAGACAT
TATTGCAAGATAATTCAAGATATCAAACATTGAAGTTTGAGAAGACTTTA
AAACATTTGAATGATAAGATACAAGCTGTTTATGGCCCAGTCTCAAAAAT
CTGGGCAGCTTACGAGGAAGAGAAAGAGAACTGTAGTGAAGAGGAATTAG
AAGAAGGCCGGGAAAAAGCACAATGCTTCGAACAGGCTATTATGCTTCTT
GGCCAAGTGTCGAACTCAGTGATGTATTACCGCAGAGAAAACGTCTTGAG
TACACTCATTGAATCCTCAGCACAAATTAAAGAAATATTGCAGAATCAAT
CGAAAGACATGAATGATCAATCCAATTCCAGTCTATTTGGTGAAACCTTC
GAAACGAAACTAATCAAGGATTCCAAAGCTCTGAAAAAGTCAGAGGCATT
CTTCACCGCCCTGAAAAAGCCGGCAAAGACACAATCCTCATCTGCTACCG
CTGCCAGTTCCAACCAGCCCAATCGCAGGGGCTCCTTGCTTAGAGGAGGA
AGAAGCAGGGGGCAGTTCTCATTTAGAGGACGATACTTTCGAGGAAGACG
AGGACGTGGTGGTTATCGAGGAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00031971-exon-sc0000937-1491911889:5186..6127 | TCONS_00031971-exon-sc0000937-1491911889:5186..6127 | Clytia hemisphaerica | exon |
| TCONS_00031971-exon-sc0000937-1510915933:5186..6127 | TCONS_00031971-exon-sc0000937-1510915933:5186..6127 | Clytia hemisphaerica | exon |
| TCONS_00031971-exon-sc0000937-1575043694:5186..6127 | TCONS_00031971-exon-sc0000937-1575043694:5186..6127 | Clytia hemisphaerica | exon |
| TCONS_00031971-exon-sc0000937-1491911889:10149..10463 | TCONS_00031971-exon-sc0000937-1491911889:10149..10463 | Clytia hemisphaerica | exon |
| TCONS_00031971-exon-sc0000937-1510915933:10149..10463 | TCONS_00031971-exon-sc0000937-1510915933:10149..10463 | Clytia hemisphaerica | exon |
| TCONS_00031971-exon-sc0000937-1575043694:10149..10463 | TCONS_00031971-exon-sc0000937-1575043694:10149..10463 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000937 | supercontig | sc0000937:5186..10463 + |
Blast
The following BLAST results are available for this feature:
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