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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00031321 ID=TCONS_00031321|Name=TCONS_00031321|organism=Clytia hemisphaerica|type=transcript|length=7048bpRun BLAST on NCBI protein sequence of TCONS_00031321-protein >TCONS_00031321-protein ID=TCONS_00031321-protein|Name=TCONS_00031321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2147bp MDKPKLAPGPKPRVKRTALPPPGDFIALGSKNPSGKPRPNESDLTKPLPPRun BLAST on NCBI transcript from alignment at sc0000889:68056..110400- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00031321 ID=TCONS_00031321|Name=TCONS_00031321|organism=Clytia hemisphaerica|type=transcript|length=42345bp|location=Sequence derived from alignment at sc0000889:68056..110400- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000889:68056..110400- >TCONS_00031321 ID=TCONS_00031321|Name=TCONS_00031321|organism=Clytia hemisphaerica|type=CDS|length=251316bp|location=Sequence derived from alignment at sc0000889:68056..110400- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00031321 vs. Swiss-Prot (Human)
Match: INT1 (Integrator complex subunit 1 OS=Homo sapiens GN=INTS1 PE=1 SV=2) HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0 Identity = 523/1345 (38.88%), Postives = 777/1345 (57.77%), Query Frame = 3
Query: 81 KPKLAPGPKPRVKRTALPPPGDFIALGSKNPSGKPRPNESDLTKPLPPGI---RKPNLGSVSHVT---TG-SKRKDLSPVNPVAA---------KQSRTFSPSFNRKEKSLDVHQILPTVKLIDAPAIELEETVLAAVKKEDQDQIDGLICNAIKLLKNNRLKPEPMLYLTLMNLAKSNPAIFSSKKIVEHLLQFLKRENTLGTVKPKPNTLLSIMTCNILLHAFQKEDIWPQSFMKVYVDDALADRSWVDNENNKDFVQNITTVFGTTIPKKPNVSKGNQDGSATVVPMETGTGGEKK---CVEEKIMEDLGISIECDEPALIRNRYMTQKDESA--IQNHILEVVKEQLNKRQMIDSVSRNTLRFLTSVCGYVEVRLHASQRMETWLQNPKLTRPAQELLMSVVLNCNTHSEYDVDVISNLVKMRLKSKP--NHYINCMKELLSKHPDNLSTTMRRVIYNELSQQRNPNNMAILSVMFSYAPQQSAQHLSCVFQELLCNREDYLRAIRALFREIVRSLKYDINMVEFCRGLMQERRETSFLELEQIYKDRILVSIIDLITMACFLCVSPTVKELASAVTKDEKRDYTALKNFQQQIALIQQDTVWFFHTKVKFLYNCNDKEFVLGLFRALFLDPAETYNQRDNWPPESEKNLLMQLVTEVPLMEDTLLRLHMLGLSPEIALPCDRAMEIIEKLVFRSAVLSSIGRPGLAVERLDAVKMLLSLAAYTYPKEITLPPGYESPNLAITLLYWRAWSILLVIAALNPTTIGIYVWENYPTARCMMEMLITGCYDFPPFA-SSGMTLDDARNKELQMARSEKDEIIVFEGHLAAATSGQVITESTSRLISQLISLDPTGPARQPPANYMKQLKSLNEKHQLGKLLCQCRSPDFLLSIIESQGSSKSMPWLADLVQSSESSLNALPLQCLCEFLLMGHNSMDKQTNKQKSIKSK-----------------VAGRLQDLLFGNEATEDSVSSLVQYFVNRWSSPSLKDRDASVFAFXXXXXXXXXXXXQSVSSESEMETEIPIND---PFHWMHQKLLTFPFFGSVLPDIINAMTKALRVEMDPCRIRAYINFLSQHQTP----STLPSIVDSLSNLITGRIAVIDRVLSEATPKALE--AYKCLLQITATYVQTQQQLDDKSGPDLIQWMDGP-------YAGKSAILPLPLLRACVQLLTYKSLLSGGMDTSFDFLHRVFVP--------FNRMNIHHDILFDASLKKKLLRCGEAQFAREVLVASTVVETLSFIQMPAIPKAIQLVILERLDDFSNTQPKMIELSTPNKERLIRLVECLRPPHENIGNSFLGLLKNSITLPETDQT 3920
KP P K + PPPGDFIALGSK + + + S L KP P G+ RK + + TG +KR LS P++A + R SPS KE S+ ++LPTV L + A ELE + D+I+G++C A+K LK R KP+ LYL+LM LAK P IF+++ ++E L L+R+ ++ K K N+L+S++ CN+L+ A+++++ WP+ F+KVY++D+L +R WVD+ + K FV NI T F T +P + + +G A V + G G EE +L I+ E P + M + +E A ++ ++L+++++QLN+RQ ID+VSRN LR LTS CGY EVRL A Q++E WLQNPKLTRPAQ+LLMSV +NCNTH D+DVIS+L+K+RLK K NH++ C++ELLS H DNL TT++ VI+NELS RNPNNM +L ++ + + + L+ VFQ+LL N++DYLRA RAL REI++ K++IN FC GLMQER+E +LE+E +K+R +V I D++ ++ L ++ VKE A K EKR+ L++FQ QIA IQ+D VW+ HT V + K++V L + LF + ETY + DNWPPES++N ++L +EVP++EDTL+R+ ++GLS E+ L AME+ + LV R+A + + L V R + +L+L Y +P+ I LPPGY+ PNLAI+ LYW+AW +LLV+AA NP IG+ WE YPT + +MEM++T Y +PP + T + N+ELQ A+ EK EI+ FEGHLAAA++ Q ITES+S L+SQL SLDP GP R+PP + + Q+KSLN+ +LG LLC+ R+PDFLL II+ Q SS+SMPWLADLVQSSE SL+ LP+QCLCEFLL H+++D + ++ + + + GRLQDLL G +A E + ++ YF+ R S + R ++ ++ + E ME ++ D + W+ + L P F SV A+ +A+ +E DP I AY+ +LSQH TP + + ++ L+ R ++ + S+ +P A LL I + YV+ +Q K G ++ W + +G++A + + ++ A V LLT + D+ F L ++ P F +L LK +++R + L + L F+Q IP + +L+ LD P+ +E + +K + LVE + G +F LL S+ P D T
Sbjct: 5 KPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESK-TASTLLKPAPSGLPSERKRDAAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSI--KEPSVVPIEVLPTVLLDEIEAAELEG---------NDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASI-NFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKTFVDNIQTAFNTRMPPRSVLLQGE----AGRVAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQ-EGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMVFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEME--FKERFVVHITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSISKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIGLSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCEFLL--HDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGE--EKEPPMEEDVGDTDVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQH-TPVEEQAQHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQ--SKEGEEVYSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRAD--DSEFQALLDIWFPEEKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSKLLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLP-PRRDST 1319 HSP 2 Score: 130.954 bits (328), Expect = 5.576e-30 Identity = 153/614 (24.92%), Postives = 264/614 (43.00%), Query Frame = 3
Query: 4653 GIVSGIIVDWLCRVDPEILQLNPMLLREFLFTRNEKQIDGPIKTEDLSKQPIKTESSSKEPIKIDGSSSEPINDEKEQPISEENKCVAYLTSVMAHEIRGCTLQDCIQWMFSSTKSLERFNATSCLDFTTTLLNNPRLWQGRDNKXXXXXXADHDKPCDENNQHNEEESPLTLTMSQTHQLMHIILMELSSAMSNPSSDQITTLMEKRLSLLLNVAKNKTHLQKAV--NLVKTTKKFPEDVLA--C--FLQYLYMKKPTLSNLSNELFKGHYDNPLVLPMENKMEMDLIIHRLILTISEPDDSPEFKETFQSVSTLHRRIASQHPFAFVRQXXXXXXXXKGKNRLTANNFKWTNQLTLCNHVFEMFHLLREHVFSSQKICENLITDFVDVFLDLIYAPCLQNNDVAAFVEKLSNFMMYYASFNGKEAGLLLKKHDATFKELQYDFPNFIELTNLVSFMK--SFDENAH-------------AHFTLVK-STMEIWSESKLKSYRKRLSTDHHKQDLEAVLMELKKASKIHAELLHHFIEELSLLVFSDDERIRELSHELIINSYQKKPSDANNLIDLYTKCVNSNKLDILLSAAKFAPQGLLLCSDRVDSLLLH 6428
G SG++VDWL +DPE++ P L LF+R K + ++ P S P YL ++ H+ TL CI+ + ++ +RF+ ++ LDF ++ PR+WQGRD + Q EE L + + L+ +IL E + S +L++ RL LLL+ + V +L +++ + VL C L LY+++P L E+ H + + ++D +IHR I +++ DS + S R++A HP +R LP++ +LL G+ L F+ N L+ HV + LL+ HVF S+ + + D + F+ L+ + +AAF+ K F+ Y ++N A L+KH +L +D + + L +L++ + S D+ LV S + +++ Y KRLS +DL VL ++ + S+ E+L F L L+ S +E R L+ L + S Q PS A + + C+ S +++ +A + P+ LLC + ++LLH
Sbjct: 1612 GPSSGLLVDWLEMLDPEVVSSCPDLQLRLLFSRR------------------KGKGQAQVP------SFRP-----------------YLLTLFTHQSSWPTLHQCIRVLLGKSRE-QRFDPSASLDFLWACIHVPRIWQGRDQR---------------TPQKRREELVLRVQGPELISLVELILAE-AETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCRDLLLQLYLQRPELRVPVPEVLL-HSEGA---ASSSVCKLDGLIHRFITLLADTSDSRALENRGADASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQPHVFRSEH--QGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQKHADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFTPLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCRNLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHA-AVLLH 2160 The following BLAST results are available for this feature:
BLAST of TCONS_00031321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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