TCONS_00030816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030816
Unique NameTCONS_00030816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030816 ID=TCONS_00030816|Name=TCONS_00030816|organism=Clytia hemisphaerica|type=transcript|length=743bp
agataaaaaattgaaatgaaaaatgatacaaacaaacaaacaaacaaaca
aacaaacagatgAAGACAGCTTGGTTGAAGTCATTTAAAAGCAGACAAGA
ATTGTGAAGAGTAAAGAGAATTCGTATCGTCGGACGGAGCCCACTAAGAC
CTCAAATCGAAAGAATCCCTGGCAAGAAAAGTCTTTTTCGTGAACTTACT
GAACTTAAGTGTTAATGATAAATGGTATGGCAAATACAAAAGTCGATGTC
GCAGGTCAGCAAAAGCTGATGGTTGGCTTAtccaatttcattaaaatagt
ttGACAGCCCCTTTTGACAGGCaaagaaaaattcgaaatttggAATTTGG
ATTGACACCGAACTTCTCTCCATATCCATCATACCTAGAATGTTTAAAAT
CGAGTGTTGTAAATATGCAGGCCTGTTTGATGACAGCAAGTTTTCTAGGA
AAAATCGAAAAggtaaaaatgtttttacaaaatttcatagTCGGTACGTT
GAACTTAATGCTTCCGCACCGAGAAATGATGCGGTTTGGAATTATGAATA
CAGTATATAGCCCCAAAATGTAGGTTAAATACTTCTTGAGATCTTACTaa
cgaatatttttccaaagTTTTTACAAGGTTAGAAGCTTTGTATTGAaatc
aatccaaaaaaaattctcaaaaatcttgacttttattttggtttttttaa
TCGGCTAAATTTaagtcacattttttcaaatggTTTCTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000852:135607..137486-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030816 ID=TCONS_00030816|Name=TCONS_00030816|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at sc0000852:135607..137486- (Clytia hemisphaerica)
AGATAAAAAATTGAAATGAAAAATGATACAAACAAACAAACAAACAAACA
AACAAACAGATGAAGACAGCTTGGTTGAAGTCATTTAAAAGCAGACAAGA
ATTGTGAAGAGTAAAGAGAATTCGTATCGTCGGACGGAGCCCACTAAGGT
ACAGAACACTAAACAAATAGCTCCGGCCTTAATATCTAACTTTAATATCC
CAAATTCAAAAACTTTGTTTATGAAAATATATCATAGGATCAATTTTATA
TATCTTTCTTGCTAAATTCTAGACTATTCGTGATATTTTATCCCCAAAAT
TATTTGTATAGGAGTGGTTAGCCAAATAACAAACGCCAAAACTGGTTTCC
CTTATCGTTCACCCACTTCTGGGCTTTCCGTTCTGCTCACAGCGTCTTTT
CCAGGAGTAAAAAATAGAAAGTTAAATGGTAATTTAAGAGGTTAAGTTTT
AGTTTAACTTTTATTTTGTTACGACGGCACGCCCTTCAACACTTCTAGCT
AGAGTGGCTTCAGCAGGCCGTCCGCCCGTAGTACGCGCCCATCGCATTTG
CCCCGTTCGGTAGAATCGAGAGGTGGTTTAGAGCTATGACTTAGAGCACG
ATCCTTCTTTCGCAACGAAGCTCATCTTACAGTGAAGACAGAGAAAATTT
TTTCCCTCCCTCCCTCCCTTCAAGGCTTGCGGACATGGTTGCAGGCGGCC
ATCTTATACACTATAATGATTGTCAAATATGGGAAATATTTTATCCCCAA
AATTATTTGTATAGGAGTGGTTAGCCAAATAACAAACGCCAAAACTTATA
CACTGGTTTCCCTTATCGTTCACCCACTTCTGGGCTTTCCGTTCTGCTCA
CAGCGTCTTTTCCAGGAGTAAAAAATAGAAAGTTAAACGTGGTAATTTAT
TCTTTTATAAGGCACAAATTCTTTTTAAATTTTCCGTTTTTTTAGACCTC
AAATCGAAAGAATCCCTGGCAAGAAAAGTCTTTTTCGTGAACTTACTGAA
CTTAAGTGTTAATGATAAATGGTATGGCAAATACAAAAGGTATGGGGAAG
TTTCTTTTACGATGTTTTATTAACCGAGTCTTTTAAAAATGTTTCATTTT
TTAAGAACAATAGAAATTATCGCTTTGGCACAAAAAGGCATAGAACTTTA
TTTACTACATTTTTGTTAAAAATGTTACAAATTAGACAAGATAGAATGTT
TGACTGACATATCCTGCGTTTATCGTAACCTGTGTCCAAATATGAAAACA
TGTATGCTACTGCAAATTCTTTTCCTCTACCCTTACTACTACTAGAGGCT
CCTCTATCGACTCATTATAAAGGACTATGTTTCGCTATAGATAGATAGAT
AGTTAGATTAATCTTATTCTTTCTTTTAGTCGATGTCGCAGGTCAGCAAA
AGCTGATGGTTGGCTTATCCAATTTCATTAAAATAGTTTGACAGCCCCTT
TTGACAGGCAAAGAAAAATTCGAAATTTGGAATTTGGATTGACACCGAAC
TTCTCTCCATATCCATCATACCTAGAATGTTTAAAATCGAGTGTTGTAAA
TATGCAGGCCTGTTTGATGACAGCAAGTTTTCTAGGAAAAATCGAAAAGG
TAAAAATGTTTTTACAAAATTTCATAGTCGGTACGTTGAACTTAATGCTT
CCGCACCGAGAAATGATGCGGTTTGGAATTATGAATACAGTATATAGCCC
CAAAATGTAGGTTAAATACTTCTTGAGATCTTACTAACGAATATTTTTCC
AAAGTTTTTACAAGGTTAGAAGCTTTGTATTGAAATCAATCCAAAAAAAA
TTCTCAAAAATCTTGACTTTTATTTTGGTTTTTTTAATCGGCTAAATTTA
AGTCACATTTTTTCAAATGGTTTCTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017691XLOC_017691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030816-exon-sc0000852-1575043694:137339..137486TCONS_00030816-exon-sc0000852-1575043694:137339..137486Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1575043694:136448..136541TCONS_00030816-exon-sc0000852-1575043694:136448..136541Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1575043694:135607..136107TCONS_00030816-exon-sc0000852-1575043694:135607..136107Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1510915933:137339..137486TCONS_00030816-exon-sc0000852-1510915933:137339..137486Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1510915933:136448..136541TCONS_00030816-exon-sc0000852-1510915933:136448..136541Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1510915933:135607..136107TCONS_00030816-exon-sc0000852-1510915933:135607..136107Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1491911889:137339..137486TCONS_00030816-exon-sc0000852-1491911889:137339..137486Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1491911889:136448..136541TCONS_00030816-exon-sc0000852-1491911889:136448..136541Clytia hemisphaericaexon
TCONS_00030816-exon-sc0000852-1491911889:135607..136107TCONS_00030816-exon-sc0000852-1491911889:135607..136107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000852supercontigsc0000852:135607..137486 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.07947	7.89174	3.96341	2.71925	2.11177	1.23453	1.26935	2.00409	1.76527	1.31262	1.14667	1.25492	1.22188	1.00757	0.510001	0.322826	1.00944	0.753412	0	0.241502	1.08185	0.99601	4.95814	3.79494	0.886736	2.7929	0	0	1.63259	2.30825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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