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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030809 ID=TCONS_00030809|Name=TCONS_00030809|organism=Clytia hemisphaerica|type=transcript|length=3836bpRun BLAST on NCBI protein sequence of TCONS_00030809-protein >TCONS_00030809-protein ID=TCONS_00030809-protein|Name=TCONS_00030809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1123bp MDNRKTTFDKCDKDACRNMQEIIFRAFTTSGYQHFMDAKFTSSTIMLPHGRun BLAST on NCBI transcript from alignment at sc0000852:90905..106720- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030809 ID=TCONS_00030809|Name=TCONS_00030809|organism=Clytia hemisphaerica|type=transcript|length=15816bp|location=Sequence derived from alignment at sc0000852:90905..106720- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000852:90905..106720- >TCONS_00030809 ID=TCONS_00030809|Name=TCONS_00030809|organism=Clytia hemisphaerica|type=CDS|length=30348bp|location=Sequence derived from alignment at sc0000852:90905..106720- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00030809 vs. Swiss-Prot (Human)
Match: PAR11 (Poly [ADP-ribose] polymerase 11 OS=Homo sapiens GN=PARP11 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.097e-34 Identity = 90/273 (32.97%), Postives = 139/273 (50.92%), Query Frame = 3
Query: 2685 IEFSSEDGVDHMLDFEDMLVMNLDNEEEKKVERRAVPIE--DKPPQPNIFEVPAHWNNV-PDAGYVLIPVTDQ--KFNEIAAQFTQTMGQQYNSNQVGGQANGKIASIQEVCNVQTFQRYCLKKQNMKKTNGEANVNEKQIWHGTRHAIVEAICAQNFDGRMNTAYA--IGKGVYFARNASMSSGYCKSVDGNGLSY------------------MFLVDALIGYSTLGKHEYVRPPVRQGNI--LFDSLVDNIANPNMYVV-EGDQVYPRYL 3419
I F++ + +DF +M MNL +++ ++R I + +P HW NV Y LIP+ +Q ++NE+A F +TM + +I IQ + N+ ++ +C KK +KK G +NE+ ++HGT VEAIC NFD R+N + GKG YFAR+A+ SS +CK +G ++ MFL LIG G +Y+RPP + G+ L+DS VD+ NP ++VV + +Q+YP YL
Sbjct: 68 ISFTTSK-FSYKIDFAEMKQMNLTTGKQRLIKRAPFSISAFSYICENEAIPMPPHWENVNTQVPYQLIPLHNQTHEYNEVANLFGKTMDR------------NRIKRIQRIQNLDLWEFFCRKKAQLKKKRGVPQINEQMLFHGTSSEFVEAICIHNFDWRINGIHGAVFGKGTYFARDAAYSSRFCKDDIKHGNTFQIHGVSLQQRHLFRTYKSMFLARVLIGDYINGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDANQIYPEYL 327 The following BLAST results are available for this feature:
BLAST of TCONS_00030809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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