TCONS_00030617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030617
Unique NameTCONS_00030617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030617 ID=TCONS_00030617|Name=TCONS_00030617|organism=Clytia hemisphaerica|type=transcript|length=465bp
GTTTTTGCAAAGCAGAAATTTATGCGGAAAGATTTCTTATTGCAATATAA
AGGCGAAAATATATCACCAAAGGAAGCAGAGAGGCGAGCCTTGGACTACA
AGCACAGAGGGATTGGTAATTTCATCTTTGACCAAATAAAAGATTGTCGT
AATAAATGGATttgtaTTGATGGAACAATGGAATCATCCTTTGGACGGTT
AGTCAATGATTCACCTCAAGACTTTGCCAACAGTGTGATGAAAAGGGAAA
AGATTGGCAATAGGGTTATCCTTTGCCTCTATGCTCTTAATGACATTGAA
ATTGAGGTACTGAGGGGTATTTTTCAATATGTcaataatttcaatttaat
ggCTGTTGATGGTGTTACATtaatttggttttataggaTTTTCTTAGtgt
gattttaagattttatttatgtataCTGTATTCTAAGAGTTCTGgtcaaa
atttattgagtttat
Run BLAST on NCBI

protein sequence of TCONS_00030617-protein

>TCONS_00030617-protein ID=TCONS_00030617-protein|Name=TCONS_00030617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
VFAKQKFMRKDFLLQYKGENISPKEAERRALDYKHRGIGNFIFDQIKDCR
NKWICIDGTMESSFGRLVNDSPQDFANSVMKREKIGNRVILCLYALNDIE
IEVLRGIFQYVNNFNLMAVDGVTLIWFYRIFLV
Run BLAST on NCBI

transcript from alignment at sc0000832:109067..110592-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030617 ID=TCONS_00030617|Name=TCONS_00030617|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at sc0000832:109067..110592- (Clytia hemisphaerica)
GTTTTTGCAAAGCAGAAATTTATGCGGAAAGATTTCTTATTGCAATATAA
AGGTATATATATTTGAGTGCAATTTAGAATATTTTTTTTAATTTTTGTAT
CATATTCTTAATGAATAAAGCTTTACCTCAATACTTACTTAATAGATTGA
TAGTGGTGAATATTTTTTGTTAGGAGACCTTGCTACTTCTTTTTTTTATG
ATTCTGATGAAAAAGTAGCATGGTCTTACCAGTCAGTTTAAATTTCGGCA
GTTGATAAAAAGAACCAATCAAAAAAATTTTGTCTTTACTAAAACAAAAT
TTTGACACTTTTTTTGGCCAAGGAATATAGTAAAAAAGTCCAGCGGCGAA
TATTAATTTTTGGCATCCTGGTTGCAACTCAGCCATTATATCAAAATCAA
AAAACGTGGCTGATGTGTCTTAGCTAAAAAGCCATGCGAGGGTAATGAAT
TTTAAATGCATGGATTTCAATGACTAATCTAATCTAATCTAATCGAAGAA
GGTTTATGGTTTTGTTTTATCATGTTTTTTTTTTTCTATCAGATTATCAT
GTTATCAATTCTTGATCAAATAGTTGTGACTTTTTAACCTTTAGCCACCG
CTCTGTTTTTTAAAAATTATCATTTTTTACACTTTAATTTTTCATGAATT
TTGAAACTCAAAGCCAAATTGTGGTCACAGTGGTAAGACTCAGGCAATTC
TTTTGGTACCATTGGAAAGTCTCAGCTTTCGAAAACAACCGGGGCATTTT
GGCTGAAAACATAGTGGTTTTGAGCTATGGTCAAAAGACTGTGGGTCGTA
AAATCTTTTAGAGGTGTACACCGTACGTCATTCGGTGGCTAAAGGTTAAT
GATGTTCCAAATATTTGGCGGCCTAGGAAATTCAGATTTTTTTAAACGCA
ATGCTTTGATGAGAAAACCATCAAATCTGACTACCTCTCTCTGTTTAAAT
TTCCAAAACTTTTAAAACGTGTCTCACTTACTTTAAATTCAGGCGAAAAT
ATATCACCAAAGGAAGCAGAGAGGCGAGCCTTGGACTACAAGCACAGAGG
GATTGGTAATTTCATCTTTGACCAAATAAAAGATTGTCGTAATAAATGGA
TTTGGTAAAAATAATTTTTTTAAATATTTTGTCATCACATTAATTTCTGA
TTTTGTTCTTTTCAAAAGTTACTAATGAAATAATCGAAAAGAAAAAATCG
ATACGATTTTATTTTGATTTTCAAGTATTGATGGAACAATGGAATCATCC
TTTGGACGGTTAGTCAATGATTCACCTCAAGACTTTGCCAACAGTGTGAT
GAAAAGGGAAAAGATTGGCAATAGGGTTATCCTTTGCCTCTATGCTCTTA
ATGACATTGAAATTGAGGTACTGAGGGGTATTTTTCAATATGTCAATAAT
TTCAATTTAATGGCTGTTGATGGTGTTACATTAATTTGGTTTTATAGGAT
TTTCTTAGTGTGATTTTAAGATTTTATTTATGTATACTGTATTCTAAGAG
TTCTGGTCAAAATTTATTGAGTTTAT

Coding sequence (CDS) from alignment at sc0000832:109067..110592-

>TCONS_00030617 ID=TCONS_00030617|Name=TCONS_00030617|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000832:109067..110592- (Clytia hemisphaerica)
TATTGATGGAACAATGGAATCATCCTTTGGACGGTTAGTCAATGATTCAC
CTCAAGACTTTGCCAACAGTGTGATGAAAAGGGAAAAGATTGGCAATAGG
GTTATCCTTTGCCTCTATGCTCTTAATGACATTGAAATTGAGGTACTGAG
GGGTATTTTTCAATATGTCAATAATTTCAATTTAATGGCTGTTGATGGTG
TTACATTAATTTGGTTTTATAGGATTTTCTTAGTGTGAGCGAAAATATAT
CACCAAAGGAAGCAGAGAGGCGAGCCTTGGACTACAAGCACAGAGGGATT
GGTAATTTCATCTTTGACCAAATAAAAGATTGTCGTAATAAATGGATTTG
GTTTTTGCAAAGCAGAAATTTATGCGGAAAGATTTCTTATTGCAATATAA
AGTATTGATGGAACAATGGAATCATCCTTTGGACGGTTAGTCAATGATTC
ACCTCAAGACTTTGCCAACAGTGTGATGAAAAGGGAAAAGATTGGCAATA
GGGTTATCCTTTGCCTCTATGCTCTTAATGACATTGAAATTGAGGTACTG
AGGGGTATTTTTCAATATGTCAATAATTTCAATTTAATGGCTGTTGATGG
TGTTACATTAATTTGGTTTTATAGGATTTTCTTAGTGTGAGCGAAAATAT
ATCACCAAAGGAAGCAGAGAGGCGAGCCTTGGACTACAAGCACAGAGGGA
TTGGTAATTTCATCTTTGACCAAATAAAAGATTGTCGTAATAAATGGATT
TGGTTTTTGCAAAGCAGAAATTTATGCGGAAAGATTTCTTATTGCAATAT
AAAGTATTGATGGAACAATGGAATCATCCTTTGGACGGTTAGTCAATGAT
TCACCTCAAGACTTTGCCAACAGTGTGATGAAAAGGGAAAAGATTGGCAA
TAGGGTTATCCTTTGCCTCTATGCTCTTAATGACATTGAAATTGAGGTAC
TGAGGGGTATTTTTCAATATGTCAATAATTTCAATTTAATGGCTGTTGAT
GGTGTTACATTAATTTGGTTTTATAGGATTTTCTTAGTGTGAGCGAAAAT
ATATCACCAAAGGAAGCAGAGAGGCGAGCCTTGGACTACAAGCACAGAGG
GATTGGTAATTTCATCTTTGACCAAATAAAAGATTGTCGTAATAAATGGA
TTTGGTTTTTGCAAAGCAGAAATTTATGCGGAAAGATTTCTTATTGCAAT
ATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017555XLOC_017555Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030617-proteinTCONS_00030617-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030617-exon-sc0000832-1575043694:110541..110592TCONS_00030617-exon-sc0000832-1575043694:110541..110592Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1575043694:109489..109600TCONS_00030617-exon-sc0000832-1575043694:109489..109600Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1575043694:109067..109367TCONS_00030617-exon-sc0000832-1575043694:109067..109367Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1510915933:110541..110592TCONS_00030617-exon-sc0000832-1510915933:110541..110592Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1510915933:109489..109600TCONS_00030617-exon-sc0000832-1510915933:109489..109600Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1510915933:109067..109367TCONS_00030617-exon-sc0000832-1510915933:109067..109367Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1491911889:110541..110592TCONS_00030617-exon-sc0000832-1491911889:110541..110592Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1491911889:109489..109600TCONS_00030617-exon-sc0000832-1491911889:109489..109600Clytia hemisphaericaexon
TCONS_00030617-exon-sc0000832-1491911889:109067..109367TCONS_00030617-exon-sc0000832-1491911889:109067..109367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000832supercontigsc0000832:109067..110592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55434	0.270284	0.313826	0	0	0.147683	0.534518	0.333606	0.116783	0.289309	1.82527	0.830671	1.38253	0.861461	1.33778	0.844498	1.14439	1.38623	1.62051	1.38743	0.803951	0.980347	0.158899	0.433386	0	0	0.570082	1.21681	1.07673	0.313433
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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