TCONS_00030611 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00030611
Unique Name	TCONS_00030611
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1944

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000832:93897..101780-

transcript sequence

>TCONS_00030611 ID=TCONS_00030611|Name=TCONS_00030611|organism=Clytia hemisphaerica|type=transcript|length=1944bp
GATTATTCCAAATGAGATGAGTGAATACACAGAATCTTCGAGTGAATCAG
AATATGTTTCTTCACCATCACAtgaCGTTCGTTTCACTACACAAAATCTA
CTCGTGTCAAATCCtgaCGTTCAGTTACCTACAGAAAATGACGTTCAGTT
ATCTACAGAAAATGACTGTCAGTTATCTACAGAAAATGAACTCGTGCCAA
ATCCtCGCCGAAGTAAGAAGAAATGTCCGGAATGCCAACACCCATTCGCT
GACCTCCCAAAACATTTAAGGAATGAGCATGGTTGGTCACGGACGAGCTC
CATCAGTGCTGTGGGCATGTTTGGAAtgagaaaaaggaaagaaaagaaaa
ctgcTACGAAATACAAACactatacaaaaatctgtcCATTTCCCGATTGT
AAGGGCACCACCAAAAACCCCGGTGAACACTTGCGAGGCAAAAAACATGG
GTTCAAAAAAAGTGATGAGAACTACAAACGAATGATCAAGTTGTTCCAAA
ATTATGACCCGGCTATTCAGGAAAATAATTACAAATATGGTTCGCCGATG
AAATCTGCCGgtattgttttaaagaaaaaaacaatcaaagccACTCGGGC
TAATGATAACATTGTAGTATTGGAGGACGATGGTTCCGATGCCGATGGTT
CCGATGCCGATGGTTCCGATGACGAATCTTACCGAAATTGCCTAGAAGAT
ATCCCTGAAGTGCAAGACGAAGACGAAGACgaagaaaagaaagacaaaGA
ACGAATACTAGACGAGGAATTGTATTCTGATGAGTCGTCTGATGAAAATC
GCGATGATTCTCTACATCAGTTGATAACACTTTTCGAAAACCACATGGTT
GGTCCTTATCGTGGCCGGAAAGAAAAATCTGTTAAAACGGTTTCAGGGGA
TGTAAAAAGGGCCTTGCGAGTCATGGATGTTAAGAGCGAAAAAGACTTAT
CGTCAATGATTGACAACGATGAACGCCTCTTAAAATATGTTGACTATTGC
CGAAGAAAGAAGCATTTGCCTGGGACAATTAAGACTTATTTAGGTTCGCT
AATGGACTTTATGCAGTTTCTTGCGCAATGTAAACATCACAAGCTTAATG
TTATTAATATTGTCCGAACCGAAAAACTTTTAGCTCAGTGgaagaaaaaa
tacaataaaggAGATAGACTCCAGGCCCATAAAAGAAAGGCGGACGATCG
CCATATGATTATCACACGAGACCAAGTCGCCAAATACGATGAGGGTGTAC
ATAAAGCTAAGGCAATGAGTGTATTCGCTTCATTCAAAGAGAATCcggaa
aaaattctcaaaagatCAGAACTGACTGTTGTCCGGGAATATTTCATGGT
GGAAATTGCATTAGCAAATGGCCACCGTAGTGGAGTGTCTGTCTACATGA
AAATGTCAGAATACGAAGGGTGCTATTTTGATGAAGGCTTCTTAAAGATA
CCTGTGTGGGACCACAAGACGGTGGAAACTTACGGAGCTGCCCCTGTCCA
CATGAGAATGGAGACATATGAAAATCTAAAGATTTATGTTGACTACATGC
GACCTAAATTAAATCCGACTTGTAGTGAGGTATTAGTAACATGGGGAAAA
GGGCCTATACAAGACTCTGACCCATCGAAAGCCATTCACAAAGTGTGGTC
GAAATGGTAATTTTGAAGGACGAAACCTTCCGAAAAGATTAACTATGAAT
CACGTGAgaaaatcaatttcaacaagatcAAGACAAGAGAAAAACCCTCA
TCTCAAAGAAATAGCTGCTTTAATGGCCCACAGCGTAAAAACGGCAGACA
TGCACTACGATGTTTTCGAACGTGAACACGCCTGCACTGTTGGAGCCATA
GAAGTCGAAAAATTGTTTCGAGGTAAAGGCGACTCGGAAAATACCGCGGT
AACAACaccaacaaaaagaaaaaagtggtCTCAAAACGAAGAGN

Run BLAST on NCBI

transcript from alignment at sc0000832:93897..101780-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00030611 ID=TCONS_00030611|Name=TCONS_00030611|organism=Clytia hemisphaerica|type=transcript|length=7884bp|location=Sequence derived from alignment at sc0000832:93897..101780- (Clytia hemisphaerica)
GATTATTCCAAATGAGATGAGTGAATACACAGAATCTTCGAGTGAATCAG
AATATGTTTCTTCACCATCACAGTAAGTTAATTTTCTCCCCTCCTTTAGT
TTTAGTTTAGATCGCAAGGTCGCATAAATCCCCCCACCCCCAGATTTCCA
AACTTTCAGTGATGTTTATTCAACTACACAAAGTCTATTCGTGCCAAATC
CGTGAGTATTTAAATACCTCTAAAAATTTGAACGAATGTCGATTGACTAA
TGAGTTAGAAGCTGTGGTAATATTATTATGGTTGCTAAGTATGCAAATTA
AGTTGTAAGCGTTCATTGAAGACTACTTCCACTTCTGAATTCATCAAGAT
GCTTTTTGAACGAAATGTCGTTTTTCTATTTTCAGTGACGTTCATTTAAC
TAGACAAAATCTACTCGTGCCAAATCCGTGAGTCTTTAAATACCTCTAAA
AATTTGAACGAAATGTCGATTGATTGATGAGTTAGAAGCTGTGGTAATAT
AATTCTGGTTGCTAAGTATGCAAATTAAGCTGTACACGTTCATTGAAGAC
TACTTCCACTTCTGAATTCACCAAACGCTTTTTGAACGAAATGTCGTTTT
TTCTATTTTCAATGACGTTCATTTAACTAGACAAAATCTACTCGTGCCAA
ATCCGTGAGTCTTTAAATGCTTCTAAATATTTGAACAAAATGTCGATTGA
TTGATGAATTAGAAGCTGTGGTAATATAATTCTGGTTGCTAAATGTGCAA
ATTAAGCTGTAATCGTTCATTGAAGACTACTTCCACTTCTGAATTCACCA
AACTCTTTTTTGGCACGAGTAGATTGTGTGTAGTTAAACCAGGTTAAATG
AACGTCACTGAAAATAGAAAAAAACGACATTTCGTTCAAAAAGCATTTGA
TGAATTTAGAAGAGGAAGTAGTCTTCAATGGACAATTACAGCTTAATTTG
CATTCTTCGCAACCATAATATTACCACAGCTTCCTAACTCGTTAATCAAT
CGATATTTCGTTCAAATTTTTAGAGGTATTGAAAGACTCACGGATTTAGC
ACGAGTAGATTTTGTGTAGTTAAATGAACGTCACCGAGAATAGAGAAAAC
GATATTTCGTTCAAAAAGCATTTGATGAATTCAGAAGTGGAAGTAGTTTT
CAATGAAAGAGTCAGCTTAATTTGCATACTTAGCAACCATAACAATATTA
CCACAACTTCATTGCAGTTCATTGAAAACTACTTCCACTTCTGAATTCAC
CAAACGCTTTTTGAACGAAATGTCGTTTTTTCTATTATCAGTGACGTTCA
GTTATCTACAGAAAATGAACTCGTGCCGAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCTGAAACCGTTCATTG
AAGACTACTTCCACTTCTGAATTCACCAAACGCTTTTTGAACGAAATGTC
GTTTTTTCTATTTTCAGTGACGTTCATTCAACTACACAAAGTCTATTCGT
GCCAAATCCGTGAGTCTTTAAATACCTCTAAAGATTTGAACGAAATGTCG
ATTGATTAATTAGTTAGAAGCTGTGGTAATATAATTCTGGTTGCTAAATG
TGCAAATAAAGCTGAAACCGTTTATTGAAGACTACTTCCACTTCTGAATT
CACCAAACGCTTTTTGAACGAAATGTCGTTTTTTCTATTTTCAGTGACGT
TCATTTAACTACACAAAATCTACTCGTGCCAAATCCGTGAGTCTTTAAAT
ACCTCTAAAGATTTGAACGAAATGTCGATTGATTATTTAGTTAGGAAGCT
GTGGTAATATTATTATGGTTGCTAAGTATGCAAATTAGGCTGTAATCGTC
CATTGAAGACTACTTCCTCTTCTGAATTAATCAAATGCTTTTTGAACGAA
ATGTCGTTTTTTTCTATTTTCAGTGACGTTCGTTTCACTACACAAAATCT
ACTCGTGTCAAATCCGTGAGTCTTTAAATAACTCTAAAAGTTTGAACGAA
ATGTCGATTGATTGATGAATTAGAAGCTGTGGTAATATAATTATGGTTGC
TAAGTATGCAAATTAAGCTGTAATCGTCCATTGAAGACTACTTCCACTTC
TGAATTCACCAAACGCTTTTTGAACGAAATGTCTTTTTTTCTATTTTCAG
TGACGTTCAGTTATCTACAGAAAATGACGTNTTTTTGAACGAAATGTCGT
TTTTTTCTATTTTCAGTGACGTTCAGTTACCTACAGAAAATGACGTTCAG
TTATCTACAGAAAATGACTGTCAGTTATCTACAGAAAATGAACTCGTGCC
AAATCCGTGAGTAAAAGTTTGAAAAGTATTTTTTTAAATCCTCTTAAAAT
CTGAACGAAATGTCGATTGATTGATGAGTTAGAAGCTGTGGTAATATAGT
TCTGGTTACTAAGTATGCAAATAAAGCTGAAACCGTTCATCGAAGACTAC
TTCCACTTCTGAATTCACCAAACGCTTTTTGAACGAAATGTCGTTTTTTC
TATTTTCAGTGACGTTCAGTTATCTACAGAAAATGAACTCGTGCCAAATC
CGTGAGTAAAAGTTTGAAAAGTATTTTTTTAAATCCTCTTAAAATCTGAA
CGAAATGTCGATTGATTGATGAGTTAGAAGCTGTGGTAATATAGTTCTGG
TTGCTAAGTATGCAAATAAAGCTGAAACCGTTCATTGAAGACTACTTCCA
CTTGCGAATTCATAAAACGCTTTTTGAACGAAATGTCGTTTTTCTATTTT
CATTGACGTTCAGTTACCTACAGAAAATGAACTCGTGCCAAATCCGTGAG
TAAAAGTTTTACTATTTCATATTCCTAGGTTAAAATAGTGCCCGAAACGA
TCTGAATAGGATAACCTTGGCCATAAATTCTTGGCAAAATATCATAGCTA
ACAAAATCATTTTTGATCATGTAAAAACTTTATAAAGTCGTATTGGAATC
ATAAGCAACTATAACCATTATCGTTGAAAATCAGCAGTTTCGAGCTTCTC
CCAGTATCTATGCGTAAGATGTGGGTCATATAATTACGTTGTTGCAACTC
ACTAACATCTTTCACATAATATATNGTTTTCAAGCAGAGGCTTGATTTGT
CTTCCTATAACCATTATCGTTGAAAATCAGCAGTTTCGAGCTTCTCCCAG
TATCTATGCGTAAGATGTGGGTCATATAATTACGTTGTTGCAACTCACTA
ACATCTTTCACATAACATATTGCACAGAGTCCAATTGCATTATTATTGAT
TCTAACGTTCGAGTACTTTCTTTTGTGAAGAAGTTACACTTGAGAGATTC
GTTAACTTGAGTCATAAACAGTGGCGTTTGTAGTTCGACCTATACTTCGG
AGGAAAATTGGGAAAATTGCCGATTTTGTGCCCCCAAACTATCAAAAATA
GTGAGTACAGTAGAAATTAGGCGAGGGAAGCGAGCGCGAAAATTTTTCGA
TATTTCCCCCCTTTTAAGCCAAACACTGCTATCTTTGAGGCACAAGAAGG
AATGGGGTGCCAATTAGTGTTTTAAAATGCTTTTGGAACCCATTTTCGGG
TCCCAATAAAACCAAAATTTTTCGATATTTCTCCTTTTTAAGTCATCTTC
GAGGTACAAGAAGGAATGGGGCGCCATTTAGTGTTTTAAAATGCTTTTGG
AACCCCTTTTCTGGGCCCACTAAAACCACCGCTGGAGGGCACTGCCCCTA
TGCCACCATGCTACTGATCATAAAGCTGATTGCATACTGAGAGAGGACTT
AAAATGACCTTAGTTGTATAATGGAAGTGTTCGACATTCAGAGTCATCAT
ACTCAATATGTTTGAGGCTTTTTTTAAACATGAGCAAATGCGAGCGAAGC
GAGCACCAAATTTTTCTATCAAGATGGATAGTGGAGAGCCAATTATAATG
ATATTGAAATGCGAGCGAAGCGAACACGAAATTTTAACCAGACGAGTACA
AAAATACAACCACCTATAAATCTTTTTGCATTATAAAAACTTTTTAAAAC
CTAGAAATCAGAAACATATTATATCTTCTGAGAATAAGAATTTTCGGAAA
GACGATCCTTAAGAACTTCGATTATTGGTCGTGCTTCTCTATTGGAAGTG
CGAAAAAATAGATTTTTGTTTGGCTGCATATGTTTAAGATTAATTGACGC
GAGCGAAGCGAGCTAAAAATTAATATAGAGCTTAAATTTGACCAAAAAGT
AAAATGGCACCTTGAAGAGAAAGAGGGAGAATTACATGCTAAAGGGCAAT
TACTTCAAAAAACTNTGAAGCGAGCTAACAATTAATATAGAGCTTAAATT
TGACCAAAAAGTAAAATGGCGCCTTGAAGGGAAAGAGGGAGAATTACATG
CTAAAGGGCAATTACTTCAAAAAACTTCAAAAACTTCCTTCTTTTGACAT
TCTACCCCATGCCGCCACGCTACTGTTATTCAGTTTCATTTTGATAAAGT
ATAAAATCAAATACTTGATAATATAGAAACTACTTAAAGGATAAGTGTTG
AATCTACATGCGATGGTGGAGGAAACAATTCTTCTTCTTCGCTTCTCTCA
CTCTTATCTTCGAGGGCCAACCATGGTTTGGCCCGAGGGAAATTTTTTTT
GAAAGTTAGAGCACTAGATTGGCTTGAACATCCTTAGAAAAATTAAAAAA
GGATTCCAATGGCTATTTTCCATCACCGACAGGGAAAAAAATTCCGAAAT
ATCGTCAATTATTTTGTGCTATTCGGCAGTAACGTTTAAATTTTACCCAA
AATTCCGTCACCGGTACTGAAAGAAATTTGTAAAATTCCGTCACTCCGGA
AGAAAAAGTGGTCGATTCCGCTCCTCCGCCAACCGTGAACCCCCCCCTTT
ATGTACGTTGTATTGAGGAGATCTTGTTTGGCTTGCGATAGGTTCCAATT
TTGGCAGGGATAAGTGAGCCTGCTGCGTACTTAGTGAATAAGGAATTTGA
TTCGTGTCTTGAACCTTTTTAAGTGGGGTATTGTCGATTGAGATAATGAA
TTTTAGGTATTCATTATCAAAGATCATTGTTTCTGTTTTACCATTGTTTA
TGTTCAACCTCAAACCGCGTATAACTAGATGACATCATCATGAATTTCAG
AGTATATAATGGAAGTGCCACAAACTACGAAACTTATTATAGGTATACCG
TCGTTCCCTTTAAAGTATATTTTTTTTTCTTTTTGCAGTCGCCGAAGTAA
GAAGAAATGTCCGGAATGCCAACACCCATTCGCTGACCTCCCAAAACATT
TAAGGAATGAGCATGGTTGGTCACGGACGAGCTCCATCAGTGCTGTGGGC
ATGTTTGGAATGAGAAAAAGGAAAGAAAAGAAAACTGCTACGAAATACAA
ACACTATACAAAAATCTGTCCATTTCCCGATTGTAAGGGCACCACCAAAA
ACCCCGGTGAACACTTGCGAGGCAAAAAACATGGGTTCAAAAAAAGTGAT
GAGAACTACAAACGAATGATCAAGTTGTTCCAAAATTATGACCCGGCTAT
TCAGGAAAATAATTACAAATATGGTTCGCCGATGAAATCTGCCGGTATTG
TTTTAAAGAAAAAAACAATCAAAGCCACTCGGGCTAATGATAACATTGTA
GTATTGGAGGACGATGGTTCCGATGCCGATGGTTCCGATGCCGATGGTTC
CGATGACGAATCTTACCGAAATTGCCTAGAAGATATCCCTGAAGTGCAAG
ACGAAGACGAAGACGAAGAAAAGAAAGACAAAGAACGAATACTAGACGAG
GAATTGTATTCTGATGAGTCGTCTGATGAAAATCGCGATGATTCTCTACA
TCAGTTGATAACACTTTTCGAAAACCACATGGTTGGTCCTTATCGTGGCC
GGAAAGAAAAATCTGTTAAAACGGTTTCAGGGGATGTAAAAAGGGCCTTG
CGAGTCATGGATGTTAAGAGCGAAAAAGACTTATCGTCAATGATTGACAA
CGATGAACGCCTCTTAAAATATGTTGACTATTGCCGAAGAAAGAAGCATT
TGCCTGGGACAATTAAGACTTATTTAGGTTCGCTAATGGACTTTATGCAG
TTTCTTGCGCAATGTAAACATCACAAGCTTAATGTTATTAATATTGTCCG
AACCGAAAAACTTTTAGCTCAGTGGAAGAAAAAATACAATAAAGGAGATA
GACTCCAGGCCCATAAAAGAAAGGCGGACGATCGCCATATGATTATCACA
CGAGACCAAGTCGCCAAATACGATGAGGGTGTACATAAAGCTAAGGCAAT
GAGTGTATTCGCTTCATTCAAAGAGAATCCGGAAAAAATTCTCAAAAGAT
CAGAACTGACTGTTGTCCGGGAATATTTCATGGTGGAAATTGCATTAGCA
AATGGCCACCGTAGTGGAGTGTCTGTCTACATGAAAATGTCAGAATACGA
AGGGTGCTATTTTGATGAAGGCTTCTTAAAGATACCTGTGTGGGACCACA
AGACGGTGGAAACTTACGGAGCTGCCCCTGTCCACATGAGAATGGAGACA
TATGAAAATCTAAAGATTTATGTTGACTACATGCGACCTAAATTAAATCC
GACTTGTAGTGAGGTATTAGTAACATGGGGAAAAGGGCCTATACAAGACT
CTGACCCATCGAAAGCCATTCACAAAGTGTGGTCGAAATGGTAATTTTGA
AGGACGAAACCTTCCGAAAAGATTAACTATGAATCACGTGAGAAAATCAA
TTTCAACAAGATCAAGACAAGAGAAAAACCCTCATCTCAAAGAAATAGCT
GCTTTAATGGCCCACAGCGTAAAAACGGCAGACATGCACTACGATGTTTT
CGAACGTGAACACGCCTGCACTGTTGGAGCCATAGAAGTCGAAAAATTGT
TTCGAGGTAACTACTCTTTTGTCCTTAATTTTAGGGGGGTCTAATAAACG
GGAGGGGTGGGTACTCCAGGAGAAAATACATAAAATGGGGGTGTCTTAAA
AAGTGATATTAAAAGCCCTAGGAAAATGAAGGTTTTGCACTTCTTCAGAA
AATTACCATGAAATGGGGGGGGGGTCATTACAAAATAATTTTGGGGGTGA
AAAAATGGAAAATAACCCTCCCCTTACAATTAAGTACAAAAGAGTACACG
CTTTTTTTATAAGAATAACTCTTATAAGAATAACAGGGTGAGATTTCAGA
GTTATATCAATAGGCCTTTTGTTTAGAACAATAGAAAAATAAGAATAATG
CTCACCCTCAACCAAAGTACCCTATTCTTATAAAAAAAAGCGTGTATGTG
ACTGAATTTGCTTATTAAGGGAACTAATTTTGGGGGGAATTTAATCCGTC
TGAAAAATTTAACCTTAAAATGGCGTAAAAACAGCAAAAAAGTAGCGAAA
ACCACCTTTAAAGGGTTCATATTTTCAAAAAGTATAATTTGGCGGATGAC
GGAAAAAAAAACCTTTAGCGAGAGCTTAATTCGGCGGATTTTGGCCAAAT
CCGCCAAAATTAGTCCCCAAGGTATACGTTAAGTAATTCCATTAATTTTA
TTGCGCCTTTTATTTGCCGGCACTCCTTAAAACTCCACCCCTTCCCCTGA
TTCAAGACATAATTTTAGAGGAGAGGCTTGTTTCTAGTTTTTGAAGTGTT
TTTTCATTATAGGTAAAGGCGACTCGGAAAATACCGCGGTAACAACACCA
ACAAAAAGAAAAAAGTGGTCTCAAAACGAAGAGN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_017553	XLOC_017553	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000832	supercontig	sc0000832:93897..101780 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782938	0	0	0	0.0696026	0.841924	1.08326	1.14454	0	0.978085	0.684829	0.706776	0.491532	1.82851	2.13176	1.50565	0.321859	0.511782	0.851229	0.765124	0	0	0	0.960344	0.238068	0.0979689	0.304044	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00030611 vs. Swiss-Prot (Human)

BLAST of TCONS_00030611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00030611 (transcript) - C. hemisphaerica