TCONS_00030609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030609
Unique NameTCONS_00030609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030609 ID=TCONS_00030609|Name=TCONS_00030609|organism=Clytia hemisphaerica|type=transcript|length=1784bp
attgaCGTTCAGTTACCTACAGAAAATGAACTCGTGCCAAATCCtCGCCG
AAGTAAGAAGAAATGTCCGGAATGCCAACACCCATTCGCTGACCTCCCAA
AACATTTAAGGAATGAGCATGGTTGGTCACGGACGAGCTCCATCAGTGCT
GTGGGCATGTTTGGAAtgagaaaaaggaaagaaaagaaaactgcTACGAA
ATACAAACactatacaaaaatctgtcCATTTCCCGATTGTAAGGGCACCA
CCAAAAACCCCGGTGAACACTTGCGAGGCAAAAAACATGGGTTCAAAAAA
AGTGATGAGAACTACAAACGAATGATCAAGTTGTTCCAAAATTATGACCC
GGCTATTCAGGAAAATAATTACAAATATGGTTCGCCGATGAAATCTGCCG
gtattgttttaaagaaaaaaacaatcaaagccACTCGGGCTAATGATAAC
ATTGTAGTATTGGAGGACGATGGTTCCGATGCCGATGGTTCCGATGCCGA
TGGTTCCGATGACGAATCTTACCGAAATTGCCTAGAAGATATCCCTGAAG
TGCAAGACGAAGACGAAGACgaagaaaagaaagacaaaGAACGAATACTA
GACGAGGAATTGTATTCTGATGAGTCGTCTGATGAAAATCGCGATGATTC
TCTACATCAGTTGATAACACTTTTCGAAAACCACATGGTTGGTCCTTATC
GTGGCCGGAAAGAAAAATCTGTTAAAACGGTTTCAGGGGATGTAAAAAGG
GCCTTGCGAGTCATGGATGTTAAGAGCGAAAAAGACTTATCGTCAATGAT
TGACAACGATGAACGCCTCTTAAAATATGTTGACTATTGCCGAAGAAAGA
AGCATTTGCCTGGGACAATTAAGACTTATTTAGGTTCGCTAATGGACTTT
ATGCAGTTTCTTGCGCAATGTAAACATCACAAGCTTAATGTTATTAATAT
TGTCCGAACCGAAAAACTTTTAGCTCAGTGgaagaaaaaatacaataaag
gAGATAGACTCCAGGCCCATAAAAGAAAGGCGGACGATCGCCATATGATT
ATCACACGAGACCAAGTCGCCAAATACGATGAGGGTGTACATAAAGCTAA
GGCAATGAGTGTATTCGCTTCATTCAAAGAGAATCcggaaaaaattctca
aaagatCAGAACTGACTGTTGTCCGGGAATATTTCATGGTGGAAATTGCA
TTAGCAAATGGCCACCGTAGTGGAGTGTCTGTCTACATGAAAATGTCAGA
ATACGAAGGGTGCTATTTTGATGAAGGCTTCTTAAAGATACCTGTGTGGG
ACCACAAGACGGTGGAAACTTACGGAGCTGCCCCTGTCCACATGAGAATG
GAGACATATGAAAATCTAAAGATTTATGTTGACTACATGCGACCTAAATT
AAATCCGACTTGTAGTGAGGTATTAGTAACATGGGGAAAAGGGCCTATAC
AAGACTCTGACCCATCGAAAGCCATTCACAAAGTGTGGTCGAAATGGTAA
TTTTGAAGGACGAAACCTTCCGAAAAGATTAACTATGAATCACGTGAgaa
aatcaatttcaacaagatcAAGACAAGAGAAAAACCCTCATCTCAAAGAA
ATAGCTGCTTTAATGGCCCACAGCGTAAAAACGGCAGACATGCACTACGA
TGTTTTCGAACGTGAACACGCCTGCACTGTTGGAGCCATAGAAGTCGAAA
AATTGTTTCGAGGTAAAGGCGACTCGGAAAATACCGCGGTAACAACacca
acaaaaagaaaaaagtggtCTCAAAACGAAGAGN
Run BLAST on NCBI

transcript from alignment at sc0000832:93897..98829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030609 ID=TCONS_00030609|Name=TCONS_00030609|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at sc0000832:93897..98829- (Clytia hemisphaerica)
ATTGACGTTCAGTTACCTACAGAAAATGAACTCGTGCCAAATCCGTGAGT
AAAAGTTTTACTATTTCATATTCCTAGGTTAAAATAGTGCCCGAAACGAT
CTGAATAGGATAACCTTGGCCATAAATTCTTGGCAAAATATCATAGCTAA
CAAAATCATTTTTGATCATGTAAAAACTTTATAAAGTCGTATTGGAATCA
TAAGCAACTATAACCATTATCGTTGAAAATCAGCAGTTTCGAGCTTCTCC
CAGTATCTATGCGTAAGATGTGGGTCATATAATTACGTTGTTGCAACTCA
CTAACATCTTTCACATAATATATNGTTTTCAAGCAGAGGCTTGATTTGTC
TTCCTATAACCATTATCGTTGAAAATCAGCAGTTTCGAGCTTCTCCCAGT
ATCTATGCGTAAGATGTGGGTCATATAATTACGTTGTTGCAACTCACTAA
CATCTTTCACATAACATATTGCACAGAGTCCAATTGCATTATTATTGATT
CTAACGTTCGAGTACTTTCTTTTGTGAAGAAGTTACACTTGAGAGATTCG
TTAACTTGAGTCATAAACAGTGGCGTTTGTAGTTCGACCTATACTTCGGA
GGAAAATTGGGAAAATTGCCGATTTTGTGCCCCCAAACTATCAAAAATAG
TGAGTACAGTAGAAATTAGGCGAGGGAAGCGAGCGCGAAAATTTTTCGAT
ATTTCCCCCCTTTTAAGCCAAACACTGCTATCTTTGAGGCACAAGAAGGA
ATGGGGTGCCAATTAGTGTTTTAAAATGCTTTTGGAACCCATTTTCGGGT
CCCAATAAAACCAAAATTTTTCGATATTTCTCCTTTTTAAGTCATCTTCG
AGGTACAAGAAGGAATGGGGCGCCATTTAGTGTTTTAAAATGCTTTTGGA
ACCCCTTTTCTGGGCCCACTAAAACCACCGCTGGAGGGCACTGCCCCTAT
GCCACCATGCTACTGATCATAAAGCTGATTGCATACTGAGAGAGGACTTA
AAATGACCTTAGTTGTATAATGGAAGTGTTCGACATTCAGAGTCATCATA
CTCAATATGTTTGAGGCTTTTTTTAAACATGAGCAAATGCGAGCGAAGCG
AGCACCAAATTTTTCTATCAAGATGGATAGTGGAGAGCCAATTATAATGA
TATTGAAATGCGAGCGAAGCGAACACGAAATTTTAACCAGACGAGTACAA
AAATACAACCACCTATAAATCTTTTTGCATTATAAAAACTTTTTAAAACC
TAGAAATCAGAAACATATTATATCTTCTGAGAATAAGAATTTTCGGAAAG
ACGATCCTTAAGAACTTCGATTATTGGTCGTGCTTCTCTATTGGAAGTGC
GAAAAAATAGATTTTTGTTTGGCTGCATATGTTTAAGATTAATTGACGCG
AGCGAAGCGAGCTAAAAATTAATATAGAGCTTAAATTTGACCAAAAAGTA
AAATGGCACCTTGAAGAGAAAGAGGGAGAATTACATGCTAAAGGGCAATT
ACTTCAAAAAACTNTGAAGCGAGCTAACAATTAATATAGAGCTTAAATTT
GACCAAAAAGTAAAATGGCGCCTTGAAGGGAAAGAGGGAGAATTACATGC
TAAAGGGCAATTACTTCAAAAAACTTCAAAAACTTCCTTCTTTTGACATT
CTACCCCATGCCGCCACGCTACTGTTATTCAGTTTCATTTTGATAAAGTA
TAAAATCAAATACTTGATAATATAGAAACTACTTAAAGGATAAGTGTTGA
ATCTACATGCGATGGTGGAGGAAACAATTCTTCTTCTTCGCTTCTCTCAC
TCTTATCTTCGAGGGCCAACCATGGTTTGGCCCGAGGGAAATTTTTTTTG
AAAGTTAGAGCACTAGATTGGCTTGAACATCCTTAGAAAAATTAAAAAAG
GATTCCAATGGCTATTTTCCATCACCGACAGGGAAAAAAATTCCGAAATA
TCGTCAATTATTTTGTGCTATTCGGCAGTAACGTTTAAATTTTACCCAAA
ATTCCGTCACCGGTACTGAAAGAAATTTGTAAAATTCCGTCACTCCGGAA
GAAAAAGTGGTCGATTCCGCTCCTCCGCCAACCGTGAACCCCCCCCTTTA
TGTACGTTGTATTGAGGAGATCTTGTTTGGCTTGCGATAGGTTCCAATTT
TGGCAGGGATAAGTGAGCCTGCTGCGTACTTAGTGAATAAGGAATTTGAT
TCGTGTCTTGAACCTTTTTAAGTGGGGTATTGTCGATTGAGATAATGAAT
TTTAGGTATTCATTATCAAAGATCATTGTTTCTGTTTTACCATTGTTTAT
GTTCAACCTCAAACCGCGTATAACTAGATGACATCATCATGAATTTCAGA
GTATATAATGGAAGTGCCACAAACTACGAAACTTATTATAGGTATACCGT
CGTTCCCTTTAAAGTATATTTTTTTTTCTTTTTGCAGTCGCCGAAGTAAG
AAGAAATGTCCGGAATGCCAACACCCATTCGCTGACCTCCCAAAACATTT
AAGGAATGAGCATGGTTGGTCACGGACGAGCTCCATCAGTGCTGTGGGCA
TGTTTGGAATGAGAAAAAGGAAAGAAAAGAAAACTGCTACGAAATACAAA
CACTATACAAAAATCTGTCCATTTCCCGATTGTAAGGGCACCACCAAAAA
CCCCGGTGAACACTTGCGAGGCAAAAAACATGGGTTCAAAAAAAGTGATG
AGAACTACAAACGAATGATCAAGTTGTTCCAAAATTATGACCCGGCTATT
CAGGAAAATAATTACAAATATGGTTCGCCGATGAAATCTGCCGGTATTGT
TTTAAAGAAAAAAACAATCAAAGCCACTCGGGCTAATGATAACATTGTAG
TATTGGAGGACGATGGTTCCGATGCCGATGGTTCCGATGCCGATGGTTCC
GATGACGAATCTTACCGAAATTGCCTAGAAGATATCCCTGAAGTGCAAGA
CGAAGACGAAGACGAAGAAAAGAAAGACAAAGAACGAATACTAGACGAGG
AATTGTATTCTGATGAGTCGTCTGATGAAAATCGCGATGATTCTCTACAT
CAGTTGATAACACTTTTCGAAAACCACATGGTTGGTCCTTATCGTGGCCG
GAAAGAAAAATCTGTTAAAACGGTTTCAGGGGATGTAAAAAGGGCCTTGC
GAGTCATGGATGTTAAGAGCGAAAAAGACTTATCGTCAATGATTGACAAC
GATGAACGCCTCTTAAAATATGTTGACTATTGCCGAAGAAAGAAGCATTT
GCCTGGGACAATTAAGACTTATTTAGGTTCGCTAATGGACTTTATGCAGT
TTCTTGCGCAATGTAAACATCACAAGCTTAATGTTATTAATATTGTCCGA
ACCGAAAAACTTTTAGCTCAGTGGAAGAAAAAATACAATAAAGGAGATAG
ACTCCAGGCCCATAAAAGAAAGGCGGACGATCGCCATATGATTATCACAC
GAGACCAAGTCGCCAAATACGATGAGGGTGTACATAAAGCTAAGGCAATG
AGTGTATTCGCTTCATTCAAAGAGAATCCGGAAAAAATTCTCAAAAGATC
AGAACTGACTGTTGTCCGGGAATATTTCATGGTGGAAATTGCATTAGCAA
ATGGCCACCGTAGTGGAGTGTCTGTCTACATGAAAATGTCAGAATACGAA
GGGTGCTATTTTGATGAAGGCTTCTTAAAGATACCTGTGTGGGACCACAA
GACGGTGGAAACTTACGGAGCTGCCCCTGTCCACATGAGAATGGAGACAT
ATGAAAATCTAAAGATTTATGTTGACTACATGCGACCTAAATTAAATCCG
ACTTGTAGTGAGGTATTAGTAACATGGGGAAAAGGGCCTATACAAGACTC
TGACCCATCGAAAGCCATTCACAAAGTGTGGTCGAAATGGTAATTTTGAA
GGACGAAACCTTCCGAAAAGATTAACTATGAATCACGTGAGAAAATCAAT
TTCAACAAGATCAAGACAAGAGAAAAACCCTCATCTCAAAGAAATAGCTG
CTTTAATGGCCCACAGCGTAAAAACGGCAGACATGCACTACGATGTTTTC
GAACGTGAACACGCCTGCACTGTTGGAGCCATAGAAGTCGAAAAATTGTT
TCGAGGTAACTACTCTTTTGTCCTTAATTTTAGGGGGGTCTAATAAACGG
GAGGGGTGGGTACTCCAGGAGAAAATACATAAAATGGGGGTGTCTTAAAA
AGTGATATTAAAAGCCCTAGGAAAATGAAGGTTTTGCACTTCTTCAGAAA
ATTACCATGAAATGGGGGGGGGGTCATTACAAAATAATTTTGGGGGTGAA
AAAATGGAAAATAACCCTCCCCTTACAATTAAGTACAAAAGAGTACACGC
TTTTTTTATAAGAATAACTCTTATAAGAATAACAGGGTGAGATTTCAGAG
TTATATCAATAGGCCTTTTGTTTAGAACAATAGAAAAATAAGAATAATGC
TCACCCTCAACCAAAGTACCCTATTCTTATAAAAAAAAGCGTGTATGTGA
CTGAATTTGCTTATTAAGGGAACTAATTTTGGGGGGAATTTAATCCGTCT
GAAAAATTTAACCTTAAAATGGCGTAAAAACAGCAAAAAAGTAGCGAAAA
CCACCTTTAAAGGGTTCATATTTTCAAAAAGTATAATTTGGCGGATGACG
GAAAAAAAAACCTTTAGCGAGAGCTTAATTCGGCGGATTTTGGCCAAATC
CGCCAAAATTAGTCCCCAAGGTATACGTTAAGTAATTCCATTAATTTTAT
TGCGCCTTTTATTTGCCGGCACTCCTTAAAACTCCACCCCTTCCCCTGAT
TCAAGACATAATTTTAGAGGAGAGGCTTGTTTCTAGTTTTTGAAGTGTTT
TTTCATTATAGGTAAAGGCGACTCGGAAAATACCGCGGTAACAACACCAA
CAAAAAGAAAAAAGTGGTCTCAAAACGAAGAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017553XLOC_017553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030609-exon-sc0000832-1575043694:98786..98829TCONS_00030609-exon-sc0000832-1575043694:98786..98829Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1575043694:94725..96392TCONS_00030609-exon-sc0000832-1575043694:94725..96392Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1575043694:93897..93968TCONS_00030609-exon-sc0000832-1575043694:93897..93968Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1510915933:98786..98829TCONS_00030609-exon-sc0000832-1510915933:98786..98829Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1510915933:94725..96392TCONS_00030609-exon-sc0000832-1510915933:94725..96392Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1510915933:93897..93968TCONS_00030609-exon-sc0000832-1510915933:93897..93968Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1491911889:98786..98829TCONS_00030609-exon-sc0000832-1491911889:98786..98829Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1491911889:94725..96392TCONS_00030609-exon-sc0000832-1491911889:94725..96392Clytia hemisphaericaexon
TCONS_00030609-exon-sc0000832-1491911889:93897..93968TCONS_00030609-exon-sc0000832-1491911889:93897..93968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000832supercontigsc0000832:93897..98829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.392075	0.0105507	2.0843e-09	0.00896184	0.305617	0.241952	0	0.489788	0	0.540277	0.560869	0.503703	0.229954	4.02639e-06	1.03444	1.12478	1.45239	1.63863	0.0825445	1.41627	1.34822	0.976685	0.757249	0.0279637	0	1.50105	0.771336	0.886014	0.45484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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