TCONS_00030539 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00030539
Unique Name	TCONS_00030539
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1244

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000826:62677..68313+

transcript sequence

>TCONS_00030539 ID=TCONS_00030539|Name=TCONS_00030539|organism=Clytia hemisphaerica|type=transcript|length=1244bp
AagtttgttatattttaaaGCAAAACTAACAAAAAAATTTGTACTTCTTG
GAATTCCGCAATTCTTTATGGAGCTACCAAATACAATAATGATTACCTaa
caatttcttcaaaacatcTATGATAAACATACTTCATATGTATTATCATG
TTTTGTTCTATATAAATTATTTGGATTGCTGTTTGATATGTTCAGATACT
GTTGGTAAATAATGGTGAATTTTTCAGAACATTTTTGGGGTGACAAACAC
AATGGGTTTGACGTGCTTCAACAGAACTTCAAATTGGGTCTCAATGCGAG
CAAAGAATTTGCAGACTTTTTGAAAGAAAGGAGTAACATAGAAGAAAGtt
attcaaaaagtttgttaaaacTAGCTCACAAGTGTGCAGCAGCAAATAAC
AATGTTGGAATATTTGAACCCTGTTGGAAGTTTCTTCAAAGCTCAACTGA
AAAGCTGGCCAATGTTCACAGTCAAGTTATACTACACTTAAACGATGTCA
GCAAAGCTGTTAGAGAATATGGGgaacaacaaaaagaaaaacaaaaacat
ATGAAAGATGATTTTTCTTCAACAAACGAGGCTGTCCAAAATCTACAACA
ACTAAGTGTTGCACTATTAAAGACAAAAGAAGCCTATCACCAGCGTTCAC
AAGAGGTTGAAAAGTATCGGAAAGAAATGACCAATCTAAAAGATATCAAA
ACCGCGGAAACTAAATACAAAAAGTCAACTGAGGAATATAAACAAATGGT
GGAGAGAAGAGAGATTGCTCGGAAAGAGTTCCAAGAGAAAATAACTGAAA
TGTCACAGaaacTTCAAACTGTTGAAGAGTCCCACCTGAAGCAGATGTTA
GAGTTATTGTCGAAATATGGAGAATCTATCAAAGTTGAAAGATTTCTTCT
GGAACAAATCATTGATGAATTTGGACGGAACATGGTAGCACTCACAGTTG
ACAAACTATTACAACAGTTCATCAATTTAAAACAAACTGGAAAAGATGTA
CCAGCACAAATCGACTTTGAGGAGATCACCTTGGAAACGCAACCTGTTGA
CTTGGAAGCTGTAGCCCAAGCACtcaaagaagaaaaacaaaaacgcaAGA
AAGAGAAACAAAACAAACGAGCTGAACGCAAAACcaagaaaaaggagaaa
acaacgGTCACTAACGGTTCAGTGTAAGTGATTCTAATTTGATAAGTAAT
CATTTGATGATAAAACCAtaaatttataaagcccgaaggactag

Run BLAST on NCBI

transcript from alignment at sc0000826:62677..68313+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00030539 ID=TCONS_00030539|Name=TCONS_00030539|organism=Clytia hemisphaerica|type=transcript|length=5637bp|location=Sequence derived from alignment at sc0000826:62677..68313+ (Clytia hemisphaerica)
AagtttgttatattttaaaGCAAAACTAACAAAAAAATTTGTACTTCTTG
GAATTCCGCAATTCTTTATGGAGCTACCAAATACAATAATGATTACCTaa
caatttcttcaaaacatcTATGATAAACATACTTCATATGTATTATCATG
TTTTGTTCTATATAAATTATTTGGATTGCTGTTTGATATGTTCAGATACT
GTTGGTAAATAATGGTGAATTTTTCAGAACATTTTTGGGTGAGTATTAAG
TTGAGTGTTAGATTgaatatttaattttcttttcagttCGTTGGCTACTT
TTTTtacaatgtttttttaaatttaaagtatTTGTTCCAGCCAACTGCAG
CTCATCTAGAACTGTAATTGAATTAATTACTCGTGTACCTTTCCAAACAT
CTTTCGACTATAGTCTGCGCACCAGCCGTTAGAATATTTGTCAGTTTTTC
ATGTCCTGTTATAGTCCATTTAGCCTAGGAGCTGTTAGCGGCACTAGCGA
GACCTCAACGAATGAGGGAGTCTTTAAGATGCATATGAATTTGTTTCGTT
TGATAGATAAGATACTATACTCTTTTTTCGAACTTTACTGTCTCACtatt
atttttaagaattgCTAAGTAAGCACCTGCATTATCACAAGTAGGTTGCa
ttaaatttattgaaatttcttGTTCTTAGGGTGACAAACACAATGGGTTT
GACGTGCTTCAACAGAACTTCAAATTGGGTCTCAATGCGAGCAAAGAATT
TGCAGACTTTTTGAAAGAAAGGTAAAATAGATATTCTTGTAAACTTTGTT
CAAATTGTGTGAGTATCTCAGGGCTTGAAATGACCGTCAGACATTGGAAA
TGGTTCAGCATGGTTCCATAGAAATTGCTACAGGCAATAATCATAATTTT
CATACAAAATTAATTAACCCTGATCAAACATTTTGTGTGACAGAAATTGT
TATTTATGGCTTGAACAGCTACTTAAATTACTCCTTGCTTAGgttttctg
aaaaaagttttgttaaCTATTATTAAAATTTAATACTTGTCTATTACCGT
CTCTTTTCAGGAGTAACATAGAAGAAAGttattcaaaaagtttgttaaaa
cTAGCTCACAAGTGTGCAGCAGCAAATAACAATGTTGGGTGAGTGTCACA
ACATTATCAATTTCAAGTGTTTGATTCTAACTAATTTAAAGTTTTTGTAT
GTGCTGATTTATTTACTACTATTTGATAAAATTATGGAATTTGGATAACC
CACTCCGACAGCtaatttgctaatttttttgattttttttacaatgaACT
TTTCATAATACAGAATAGAATGATGAgggatattttatatttttattttt
tctcagatttctcaaattttccacACTTTTTTCAGAATAGAATCACATtt
tgattctatttatttcactttattatattatttcaaggtattagGAATag
aaaattgctttgagttGCAATCACAATCCTATTAATATACTAATCTGTAC
TAATACCAACTTTCTTTTGAACAGAATATTTGAACCCTGTTGGAAGTTTC
TTCAAAGCTCAACTGAAAAGCTGGCCAATGTTCACAGTCAAGTTATACTA
CACTTAAACGATGTCAGCAAAGCTGTTAGAGAATATGGGgaacaacaaaa
agaaaaacaaaaacatgtaATTATTCAGTTCTCTGTCGCAGCAAAGTAAA
TAAAGAGACTTTTTCTGTCGCAATTTTCTCTATGAAGCTGCAGTTTCACA
CGATTTAGTTAATGAAAGTGTGTAATTGTTATCAGTANTTGACCACAGAT
TATTATGATAATTATTGTAGTTTTGTTCCATTCACACTCTATGAAGCTGC
AGTTTCACACGATTTAGTTAGTGAAAGTGTGTAATTGTTAACACCATTAT
CTTTCAGCccatttcaaattaaaaatatatattcaacAATATATTCAACA
CTAAAAGCCTTGAAGCCATGTGACCAATTATCAGTaatgaaggcttcaaa
attctTCAGCCTTTCAGCTGCAGATTCTGATACTCTGACAGATATATGTT
GAAAATTCGAGGAacttgaatttgaaatgttggtgaaatttttgcttttt
tgagtTTCTTATTTTCTCTTATGTTTTAACCATAGATGAAAGATGATTTT
TCTTCAACAAACGAGGCTGTCCAAAATCTACAACAACTAAGTGTTGCACT
ATTAAAGGTGAGGAATCATGCAGATTTGTATGAAAACAAACGGCATAACC
AAAAAATAATCATCTCTTTGGATTTCAAGTAAAAATAACCATGAAATAAA
TTTGTGCATGACTTGATTTTCCAACATTATGTTTGTTGCTGTAGATCCTA
AATAGGTGTGCCATTTTGACTTatgttatacacgttttttttttattaga
acacctaaaatttggctgagcctggatgtgcttattttttttagaaattt
tcagcctaaaatgttcttaaatgtgttcttaatttttcagactactctaa
atcgataatatcatgcaaaataaagagcacgtaaaattggtaaaatttgg
acaatatttgattttagaaaattcatcactaagttcagttaaaactgctt
gaaaagaggaaacaattgtagtttcttgtcatttttttccaaactgaggc
tgggcatgttcttaagatgttcttaatttttcgacgaagtTCAGACTCaa
cgttcttataaactgggttctaataaaaaaaaacgtgtatacctTATTGT
GGTAGTGTCATTTCTAAATTAGGATGGCTCTTTGGCATCTAAAAATATCT
ATTAAAGCCTTTTCTTATCCTAAAATTAGACCAGACCTCTACCATTCTCA
TGCCTAAATATTTTTAATCACTTTCCAGACAAAAGAAGCCTATCACCAGC
GTTCACAAGAGGTTGAAAAGTATCGGAAAGAAATGACCAATCTAAAAGAT
ATCAAAACCGTAATAACATTTTCAGATTAATGAATAAGGAACTTCTGTAG
CTTTCATCCATATATTTTGTTGCNGAACATTTTCAGATTAATGAATACGG
AACTTCTGTAGCTTTCATCCATATATTTTGTTGCTGGACTGTAGATTTTC
CtagaatttttcgaaatttgtgtTTTGCCCTTTATAGTTTTGTACTTCGA
GGTAATTTGATTTTGGACATTATGAGCTTtcacttttcaattttattatc
tttattttcgccatatcaattttttttatggtattttgtgttttttttgt
agGCGGAAACTAAATACAAAAAGTCAAGTAAGTTgggttattttaaattt
ttatttgtttggtAATTAGGCTTTTAAAGATGAATAATCAGGTCGCCCTG
TCCAGTAGGGAtctaaatgataaaaaataagtACNTATTTGTTTGGTAAT
TAGGCTATTGAACTTGAATAATCAGGTCGCCCTGTCCAGTAGGGATcgaa
atgataaaaatgataaataccTATATTTTGTTTGGTAGACTATTATCACA
AGGACAATATGTTATAAAGTTTCATTTCAACGTGTTTATGAATTTGGTAT
TTTGTTTTCCAGCTGAGGAATATAAACAAATGGTGGAGAGAAGAGAGATT
GCTCGGAAAGAGTTCCAAGAGAAAATAACTGAAATGTCACAGGTAAAAAC
ACAAGAATCTCTTTACTTGACCTGTAACTTATAGTTTTCCCCCCGAATGT
TATTCAAAAAGAATACTCCTAAAGGTATACATATATTTTGTTAATGTAAA
CAATTCATGCTTTGACCTTGTTTGAGGGAAGACAGTATCTGAGTATTata
tgaaatcttttataataaTCACAACATCATTATGtgaaaatttttctcag
aaacTTCAAACTGTTGAAGAGTCCCACCTGAAGCAGATGTTAGAGTTATT
GTCGAAATATGGAGAATCTATCAAAGTTGAAAGATTTCTTCTGGAACAAG
TAAGTTGATGCCATTGGGATTTATTTGACTTCTCACTTGAACAGAGGAAG
ATCAAAACTCGATACTAATTCACTCAATACTATTGGACTTTCTTCGACTC
AACTGCTAGTTGAAAAAACCTCAGAATCGTAGTCAGCTACTTAAAAGTTG
GTTCCAAACGGTAAAGATTGGGCACAAAAATTCATAGATATtggtttttg
attaaaaaacaacaaaaaagtttaaatgagAACCACAAATAGATTATTAG
GTCTAAAGTTGCTGCTACTTTTGGTTGGCTACTTTACCTAAAAAAAAAGG
CCCGAACCTTAAGGAACCTAAGAATAGTCacattttattacattttaaaa
cCATAGATCATTGATGAATTTGGACGGAACATGGTAGCACTCACAGTTGA
CAAACTATTACAACAGTTCATCAATTTAAAACAAACTGGAAAAGATGTAC
CAGGTATGCCAGTGTTCTTATACCGTAGATGAAAGATGATTTTTCTACAA
CAAACGAGGCTGAAGACTCTTCTTTATAGGCGGATTTATTTACAAGACAA
TGGAGTTTTTTTGTCTCAATACTTGATGATTAAAATCGAAAAgaatgtaa
agtttttttgcctgGTGTATTTTTCAACTTCACACGCTAAGGCAACACTg
ctttcaattttcgatttGGGATTCATTTTGATCATTTAGCTGCCTcatta
aattcatttcaataagctactctcggatacctaatagctgaatagccgtc
ccccccgctaataaatttttcgaaaattttccaaccaggaaatttttatt
ccaaccccgcgcttattaagttttgagagtttttccaatccccccgctta
ttccaatcccgccagctattaagtacccgaaaGTATTCTTGCTGATTCCA
AGCCGCCTAAAACAGTTCTGGATATTTATTAAGATATGAAGTTTTTAAAT
CCTTTTTGCTGGCTTAAGTTCTTACTCAATCTATTTTGTGTGTTGTTAGC
ACAAATCGACTTTGAGGAGATCACCTTGGAAACGCAACCTGTTGACTTGG
AAGCTGTAGCCCAAGCACGTGAGTAAAATTATCTTTGTTTCTGCAAACTT
TGATCCAACCCACAACCATTTCGCTAAAGCCTGCTTTTAAGTGGATTGGG
TTTGAATTCAGCCTCAATCAGTTGCAGTAGGTTTGCAAAACACAAAagtc
gaaaaatggaccctttGTAGTGTGCCAATTTCGAaaagtttagatttttt
tcaggGTCACTTAAGTAGGGTCCATTACTTCGAACACGGGCTTCAAGAAT
AATACCTACTGGGGTGGATTTAACACTGTTTAAAATTTCTATGTAAATTA
GTTGCCGAAATTCTTGGTCGTTCGAAGATCAAACTAGAGAACGtcagttt
tgtattttataatttatttcataatttatgTACGGCTTTTTTACAGTTGA
GGCTTAGAATAGGGTTCAAGTAATTTGgaacattttaaaattatcttgtC
TTTCATTTCCTTACAgtcaaagaagaaaaacaaaaacgcaAGAAAGAGAA
ACAAAACAAACGAGCTGAACGCAAAACcaagaaaaaggagaaaacaacgG
TCACTAACGGTTCAGTGTAAGTGATTCTAATTTGATAAGTAATCATTTGA
TGATAAAACCAtaaatttataaagcccgaaggactag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_017508	XLOC_017508	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000826	supercontig	sc0000826:62677..68313 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4557	21.2337	16.6963	13.0172	34.8491	19.6035	15.8517	24.3437	14.1509	25.367	15.1357	13.7611	17.6556	12.3257	11.3866	18.152	22.2957	18.1706	11.6287	14.6604	19.0825	16.6096	23.0423	24.755	12.8751	9.41856	20.363	16.6323	16.124	20.1485

Blast

[Close]

BLAST of TCONS_00030539 vs. Swiss-Prot (Human)
Match: FCHO2 (F-BAR domain only protein 2 OS=Homo sapiens GN=FCHO2 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.662e-57
Identity = 114/272 (41.91%), Postives = 178/272 (65.44%), Query Frame = 2

Query:  209 IMVNFSEHFWGDKHNGFDVLQQNFKLGLNASKEFADFLKERSNIEESYSKSLLKLAHKCAAANNNVGIFEPCWKFLQSSTEKLANVHSQVILHLNDVSKAVREYGEQQKEKQKHMKDDFSSTNEAVQNLQQLSVALLKTKEAYHQRSQEVEKYRKEMTNLKDIXXXXXXXXXXXXXXXQMVERREIARKEFQEKITEMSQKLQTVEESHLKQMLELLSKYGESIKVERFLLEQIIDEFGRNMVALTVDKLLQQFINLKQTGKDVPAQIDFEE 1024
            +M  F E+FWG+K++GFDVL  N K G  ++KE ADF++ER+ IEE+YS+S+ KLA K A+  + +G F P W   ++STEKLAN H  ++  L ++ K V++YGE+Q +  K  K++ + T EAVQ +Q ++ AL K+KE Y+ +  E E+ +KE    ++I+ A  K KK+T+ YK  VE+  +A+ +F++K+TE +QK Q +EE+HL  + E++     +IK     + Q+ +EF  NM   TV+ L+Q+F   K TGK+ P  I+FEE
Sbjct:    2 VMAYFVENFWGEKNSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLA-KSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTTVESLIQKFAESKGTGKERPGLIEFEE 272

The following BLAST results are available for this feature:

BLAST of TCONS_00030539 vs. Swiss-Prot (Human)

BLAST of TCONS_00030539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FCHO2	5.662e-57	41.91	F-BAR domain only protein 2 OS=Homo sapiens GN=FCH...	[more]

You are here

TCONS_00030539 (transcript) - C. hemisphaerica