TCONS_00030525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030525
Unique NameTCONS_00030525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030525 ID=TCONS_00030525|Name=TCONS_00030525|organism=Clytia hemisphaerica|type=transcript|length=751bp
attgaaatcagaaaaagtCATGATTCGTAAGCATCGTTTTTGAAGTTTAA
AGACTCTTTCCACATTATAGTTATGTTTTTGACCCCAGATTCGGCAAGCA
TAATTAAGATGCGAAAAAAATAGACCATAATAAATCTGAAGTAGTGTAGA
TAGAGGAACAAAATGTCTGAGTTTAGAAATTATTCCATTGGCACTACTTA
ATTTAGAGCATAGATTGTTTGTGTTTATTCtccaatttaaaaagtgatca
aGAGTTACTCCAAGGTATTTGACTGATTCGCTTAAATTTAGGGGAATATT
ATTAATCGAAAGCTGAAGATTATGTTTGATTTGTTTGTGTACATTCctga
aaagtaatttttttgttttagctACATTCAAAGAGATTTTGTTTGCACAA
AGCCATATATAAAGATTTTGGAGATCTGCATTGATACTTTCTTTAATGCT
AATAAGAGATTTATCTGAGTAGATTAGACTCGTGTCATCTGCAAAAAGGG
AGGTTAGGGAATGTTCAATTGCATTACATAGATCATTAATGTAAATTAAA
AATAAAAGAGGGCCTAGAACAGAACCTTGAGGAACGCCTGTTGAGATTTT
ACGTGCGTTTGAATCTGCACCTGAATATGAAACATATTGAATTCTATTAG
AAAGATATGATTGAAACCAATTATTGGGAATACCTCTGATACCATAGAGT
TCTAATTTCTTGAGTAGGATTTTGTGGTCAACTGTGTCAAAAGCTTTTTT
N
Run BLAST on NCBI

protein sequence of TCONS_00030525-protein

>TCONS_00030525-protein ID=TCONS_00030525-protein|Name=TCONS_00030525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
KKAFDTVDHKILLKKLELYGIRGIPNNWFQSYLSNRIQYVSYSGADSNAR
KISTGVPQGSVLGPLLFLIYINDLCNAIEHSLTSLFADDTSLIYSDKSLI
SIKESINADLQNLYIWLCANKISLNVAKTKKLLFRNVHKQIKHNLQLSIN
NIPLNLSESVKYLGVTLDHFLNWRINTNNLCSKLSSANGIISKLRHFVPL
STLLQIYYGLFFSHLNYACRIWGQKHNYNVERVFKLQKRCLRIMTFSDFN
Run BLAST on NCBI

transcript from alignment at sc0000825:138612..139362

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030525 ID=TCONS_00030525|Name=TCONS_00030525|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000825:138612..139362 (Clytia hemisphaerica)
NAAAAAAGCTTTTGACACAGTTGACCACAAAATCCTACTCAAGAAATTAG
AACTCTATGGTATCAGAGGTATTCCCAATAATTGGTTTCAATCATATCTT
TCTAATAGAATTCAATATGTTTCATATTCAGGTGCAGATTCAAACGCACG
TAAAATCTCAACAGGCGTTCCTCAAGGTTCTGTTCTAGGCCCTCTTTTAT
TTTTAATTTACATTAATGATCTATGTAATGCAATTGAACATTCCCTAACC
TCCCTTTTTGCAGATGACACGAGTCTAATCTACTCAGATAAATCTCTTAT
TAGCATTAAAGAAAGTATCAATGCAGATCTCCAAAATCTTTATATATGGC
TTTGTGCAAACAAAATCTCTTTGAATGTagctaaaacaaaaaaattactt
ttcagGAATGTACACAAACAAATCAAACATAATCTTCAGCTTTCGATTAA
TAATATTCCCCTAAATTTAAGCGAATCAGTCAAATACCTTGGAGTAACTC
ttgatcactttttaaattggaGAATAAACACAAACAATCTATGCTCTAAA
TTAAGTAGTGCCAATGGAATAATTTCTAAACTCAGACATTTTGTTCCTCT
ATCTACACTACTTCAGATTTATTATGGTCTATTTTTTTCGCATCTTAATT
ATGCTTGCCGAATCTGGGGTCAAAAACATAACTATAATGTGGAAAGAGTC
TTTAAACTTCAAAAACGATGCTTACGAATCATGactttttctgatttcaa
t

Coding sequence (CDS) from alignment at sc0000825:138612..139362

>TCONS_00030525 ID=TCONS_00030525|Name=TCONS_00030525|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000825:138612..139362 (Clytia hemisphaerica)
AAAAAAGCTTTTGACACAGTTGACCACAAAATCCTACTCAAGAAATTAGA
ACTCTATGGTATCAGAGGTATTCCCAATAATTGGTTTCAATCATATCTTT
CTAATAGAATTCAATATGTTTCATATTCAGGTGCAGATTCAAACGCACGT
AAAATCTCAACAGGCGTTCCTCAAGGTTCTGTTCTAGGCCCTCTTTTATT
TTTAATTTACATTAATGATCTATGTAATGCAATTGAACATTCCCTAACCT
CCCTTTTTGCAGATGACACGAGTCTAATCTACTCAGATAAATCTCTTATT
AGCATTAAAGAAAGTATCAATGCAGATCTCCAAAATCTTTATATATGGCT
TTGTGCAAACAAAATCTCTTTGAATGTagctaaaacaaaaaaattacttt
tcagGAATGTACACAAACAAATCAAACATAATCTTCAGCTTTCGATTAAT
AATATTCCCCTAAATTTAAGCGAATCAGTCAAATACCTTGGAGTAACTCt
tgatcactttttaaattggaGAATAAACACAAACAATCTATGCTCTAAAT
TAAGTAGTGCCAATGGAATAATTTCTAAACTCAGACATTTTGTTCCTCTA
TCTACACTACTTCAGATTTATTATGGTCTATTTTTTTCGCATCTTAATTA
TGCTTGCCGAATCTGGGGTCAAAAACATAACTATAATGTGGAAAGAGTCT
TTAAACTTCAAAAACGATGCTTACGAATCATGactttttctgatttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017506XLOC_017506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030525-exon-sc0000825-1491911889:138612..139362TCONS_00030525-exon-sc0000825-1491911889:138612..139362Clytia hemisphaericaexon
TCONS_00030525-exon-sc0000825-1510915933:138612..139362TCONS_00030525-exon-sc0000825-1510915933:138612..139362Clytia hemisphaericaexon
TCONS_00030525-exon-sc0000825-1575043694:138612..139362TCONS_00030525-exon-sc0000825-1575043694:138612..139362Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030525-proteinTCONS_00030525-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:138612..139362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42545	1.07478	1.55149	1.55694	1.09466	1.22767	0.986932	1.41768	0.275797	0.273295	0.0663168	0.94663	0.565935	0.678149	0.453662	0.558428	1.01075	0.592985	0.278329	0.364065	1.67081	0.994261	0.225155	0.698345	0.632505	0.752661	1.48334	1.21296	1.20293	1.91607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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